HEADER VIRAL PROTEIN/IMMUNE SYSTEM 08-JUL-15 5CEZ TITLE CRYSTAL STRUCTURE OF THE BG505 SOSIP GP140 HIV-1 ENV TRIMER IN COMPLEX TITLE 2 WITH AN EARLY PUTATIVE PRECURSOR OF THE PGT121 FAMILY AT 3.0 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP160; COMPND 3 CHAIN: G; COMPND 4 FRAGMENT: UNP RESIDUES 31-505; COMPND 5 SYNONYM: ENDOGENOUS RETROVIRUS GROUP K MEMBER 113 ENV POLYPROTEIN, COMPND 6 ENDOGENOUS RETROVIRUS GROUP K MEMBER 13-1 ENV POLYPROTEIN,ENDOGENOUS COMPND 7 RETROVIRUS GROUP K MEMBER 18 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS COMPND 8 GROUP K MEMBER 19 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K COMPND 9 MEMBER 21 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 24 ENV COMPND 10 POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 25 ENV POLYPROTEIN, COMPND 11 ENDOGENOUS RETROVIRUS GROUP K MEMBER 6 ENV POLYPROTEIN,ENDOGENOUS COMPND 12 RETROVIRUS GROUP K MEMBER 7 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS COMPND 13 GROUP K MEMBER 8 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER COMPND 14 9 ENV POLYPROTEIN,ENVELOPE GLYCOPROTEIN GP160; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES; COMPND 17 MOL_ID: 2; COMPND 18 MOLECULE: ENVELOPE GLYCOPROTEIN GP160; COMPND 19 CHAIN: B; COMPND 20 FRAGMENT: UNP RESIDUES 509-661; COMPND 21 SYNONYM: ENDOGENOUS RETROVIRUS GROUP K MEMBER 113 ENV POLYPROTEIN, COMPND 22 ENDOGENOUS RETROVIRUS GROUP K MEMBER 13-1 ENV POLYPROTEIN,ENDOGENOUS COMPND 23 RETROVIRUS GROUP K MEMBER 18 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS COMPND 24 GROUP K MEMBER 19 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K COMPND 25 MEMBER 21 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 24 ENV COMPND 26 POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER 25 ENV POLYPROTEIN, COMPND 27 ENDOGENOUS RETROVIRUS GROUP K MEMBER 6 ENV POLYPROTEIN,ENDOGENOUS COMPND 28 RETROVIRUS GROUP K MEMBER 7 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS COMPND 29 GROUP K MEMBER 8 ENV POLYPROTEIN,ENDOGENOUS RETROVIRUS GROUP K MEMBER COMPND 30 9 ENV POLYPROTEIN,ENVELOPE GLYCOPROTEIN GP160; COMPND 31 ENGINEERED: YES; COMPND 32 MOL_ID: 3; COMPND 33 MOLECULE: 3H+109L FAB LIGHT CHAIN; COMPND 34 CHAIN: L; COMPND 35 ENGINEERED: YES; COMPND 36 MOL_ID: 4; COMPND 37 MOLECULE: 3H+109L FAB HEAVY CHAIN; COMPND 38 CHAIN: H; COMPND 39 ENGINEERED: YES; COMPND 40 MOL_ID: 5; COMPND 41 MOLECULE: 35022 FAB HEAVY CHAIN; COMPND 42 CHAIN: D; COMPND 43 ENGINEERED: YES; COMPND 44 MOL_ID: 6; COMPND 45 MOLECULE: 35022 FAB LIGHT CHAIN; COMPND 46 CHAIN: E; COMPND 47 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: ENV; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 9 ORGANISM_TAXID: 11676; SOURCE 10 GENE: ENV; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 MOL_ID: 4; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 23 MOL_ID: 5; SOURCE 24 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 28 MOL_ID: 6; SOURCE 29 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 30 ORGANISM_TAXID: 9606; SOURCE 31 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HIV-1, ANTIBODY, IMMUNE SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.A.WILSON,F.GARCES REVDAT 5 27-SEP-23 5CEZ 1 HETSYN LINK REVDAT 4 29-JUL-20 5CEZ 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 28-JUN-17 5CEZ 1 REMARK LINK REVDAT 2 06-JAN-16 5CEZ 1 JRNL REVDAT 1 23-DEC-15 5CEZ 0 JRNL AUTH F.GARCES,J.H.LEE,N.DE VAL,A.TORRENTS DE LA PENA,L.KONG, JRNL AUTH 2 C.PUCHADES,Y.HUA,R.L.STANFIELD,D.R.BURTON,J.P.MOORE, JRNL AUTH 3 R.W.SANDERS,A.B.WARD,I.A.WILSON JRNL TITL AFFINITY MATURATION OF A POTENT FAMILY OF HIV ANTIBODIES IS JRNL TITL 2 PRIMARILY FOCUSED ON ACCOMMODATING OR AVOIDING GLYCANS. JRNL REF IMMUNITY V. 43 1053 2015 JRNL REFN ISSN 1074-7613 JRNL PMID 26682982 JRNL DOI 10.1016/J.IMMUNI.2015.11.007 REMARK 2 REMARK 2 RESOLUTION. 3.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 56355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4963 - 8.2054 0.99 2681 160 0.1868 0.2184 REMARK 3 2 8.2054 - 6.5217 1.00 2699 145 0.2119 0.2556 REMARK 3 3 6.5217 - 5.6998 1.00 2700 143 0.2326 0.2851 REMARK 3 4 5.6998 - 5.1799 1.00 2659 171 0.2106 0.2633 REMARK 3 5 5.1799 - 4.8092 1.00 2670 173 0.1943 0.2273 REMARK 3 6 4.8092 - 4.5261 1.00 2694 125 0.2025 0.2333 REMARK 3 7 4.5261 - 4.2997 1.00 2673 144 0.2050 0.2129 REMARK 3 8 4.2997 - 4.1127 1.00 2673 119 0.2137 0.2433 REMARK 3 9 4.1127 - 3.9545 1.00 2711 153 0.2320 0.2540 REMARK 3 10 3.9545 - 3.8181 1.00 2683 142 0.2500 0.3093 REMARK 3 11 3.8181 - 3.6988 1.00 2679 138 0.2609 0.2804 REMARK 3 12 3.6988 - 3.5932 1.00 2702 136 0.2792 0.2904 REMARK 3 13 3.5932 - 3.4986 1.00 2692 128 0.2834 0.2707 REMARK 3 14 3.4986 - 3.4133 1.00 2659 142 0.2971 0.3394 REMARK 3 15 3.4133 - 3.3358 1.00 2702 134 0.3090 0.3356 REMARK 3 16 3.3358 - 3.2648 1.00 2703 97 0.3259 0.4121 REMARK 3 17 3.2648 - 3.1995 1.00 2664 143 0.3505 0.3538 REMARK 3 18 3.1995 - 3.1392 0.99 2702 127 0.3520 0.3634 REMARK 3 19 3.1392 - 3.0831 0.99 2649 156 0.3800 0.4368 REMARK 3 20 3.0831 - 3.0310 0.96 2556 128 0.4199 0.5217 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 12492 REMARK 3 ANGLE : 1.032 17107 REMARK 3 CHIRALITY : 0.068 2064 REMARK 3 PLANARITY : 0.008 2093 REMARK 3 DIHEDRAL : 13.267 7456 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CEZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000211511. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56534 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.00000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4R26, 4TVP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL2, 28% (V/V) PEG 400 AND 0.1 REMARK 280 M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 158.06200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 158.06200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 158.06200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, L, H, A, C, F, I, J, K, M, REMARK 350 AND CHAINS: N, O, P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP G 149 REMARK 465 MET G 150 REMARK 465 ARG G 151 REMARK 465 GLU G 185A REMARK 465 ASN G 185B REMARK 465 GLN G 185C REMARK 465 GLY G 185D REMARK 465 ASN G 185E REMARK 465 ARG G 185F REMARK 465 SER G 185G REMARK 465 ASN G 185H REMARK 465 ASN G 185I REMARK 465 THR G 400 REMARK 465 SER G 401 REMARK 465 VAL G 402 REMARK 465 GLN G 403 REMARK 465 GLY G 404 REMARK 465 SER G 405 REMARK 465 ASN G 406 REMARK 465 SER G 407 REMARK 465 THR G 408 REMARK 465 GLY G 409 REMARK 465 ARG G 508 REMARK 465 ARG G 509 REMARK 465 ARG G 510 REMARK 465 ARG G 511 REMARK 465 ARG G 512 REMARK 465 ARG G 513 REMARK 465 ALA B 512 REMARK 465 VAL B 513 REMARK 465 GLY B 514 REMARK 465 ILE B 515 REMARK 465 GLY B 516 REMARK 465 ALA B 517 REMARK 465 GLY L 2 REMARK 465 SER L 3 REMARK 465 VAL L 4 REMARK 465 THR L 5 REMARK 465 GLU L 211 REMARK 465 CYS L 212 REMARK 465 SER L 213 REMARK 465 LYS H 127 REMARK 465 LYS H 212 REMARK 465 SER H 213 REMARK 465 CYS H 214 REMARK 465 ASP H 215 REMARK 465 GLN E 1 REMARK 465 CYS E 215 REMARK 465 SER E 216 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE G 215 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP D 56 O4 MAN P 4 1.26 REMARK 500 O3 MAN Q 7 C1 MAN H 301 1.57 REMARK 500 O6 MAN P 4 C1 MAN D 301 1.62 REMARK 500 O3 MAN P 4 C2 MAN P 5 1.73 REMARK 500 C3 MAN P 4 C1 MAN P 5 1.90 REMARK 500 NE2 GLN L 52 O2 MAN Q 5 1.98 REMARK 500 O4 NAG Q 2 O5 BMA Q 3 2.02 REMARK 500 O ASN L 50 N ASP L 53 2.03 REMARK 500 O4 NAG A 1 O5 NAG A 2 2.04 REMARK 500 O6 MAN P 4 O5 MAN D 301 2.05 REMARK 500 C4 NAG A 1 C1 NAG A 2 2.06 REMARK 500 OE2 GLU G 153 NE ARG G 419 2.10 REMARK 500 OG1 THR H 129 OG1 THR H 133 2.10 REMARK 500 ND2 ASN B 611 O5 NAG B 703 2.12 REMARK 500 ND2 ASN G 276 O5 NAG G 611 2.15 REMARK 500 ND2 ASN G 332 O5 NAG Q 1 2.15 REMARK 500 N ASN B 607 OE1 GLN B 650 2.16 REMARK 500 O3 NAG Q 1 O5 NAG Q 2 2.17 REMARK 500 ND2 ASN G 160 O5 NAG G 610 2.17 REMARK 500 O THR G 63 O6 MAN A 6 2.17 REMARK 500 O3 MAN Q 7 O5 MAN H 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG2 VAL B 518 O GLN E 130 25115 1.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO G 43 79.11 -69.99 REMARK 500 THR G 71 -163.97 55.82 REMARK 500 ASN G 88 1.70 80.57 REMARK 500 LEU G 122 52.05 -94.48 REMARK 500 THR G 163 -158.35 -86.84 REMARK 500 GLN G 258 -107.69 62.57 REMARK 500 GLU G 268 -118.47 57.55 REMARK 500 ASN G 276 117.20 -160.70 REMARK 500 HIS G 374 88.25 -65.86 REMARK 500 THR B 536 52.32 -112.20 REMARK 500 GLN B 551 78.14 -162.16 REMARK 500 SER B 553 -47.27 -141.97 REMARK 500 LYS B 567 32.38 -92.01 REMARK 500 ASN B 625 -10.74 -148.30 REMARK 500 GLN B 650 -67.97 -101.99 REMARK 500 ARG L 25 69.14 36.97 REMARK 500 ASP L 67 59.94 -93.84 REMARK 500 ALA L 84 -170.75 170.36 REMARK 500 ASP L 152 -131.26 56.32 REMARK 500 LYS L 157 -1.03 65.80 REMARK 500 GLU L 199 -126.93 58.33 REMARK 500 GLU H 55 66.66 61.45 REMARK 500 LYS H 141 -179.11 -69.19 REMARK 500 SER D 100B 65.50 -152.56 REMARK 500 ASP D 144 75.34 55.53 REMARK 500 GLN E 16 -167.79 -105.21 REMARK 500 ASP E 53 -118.38 64.61 REMARK 500 THR E 86 -160.86 -164.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN L 50 ASN L 51 -131.56 REMARK 500 GLN L 52 ASP L 53 -136.01 REMARK 500 LYS L 150 ALA L 151 149.28 REMARK 500 GLY H 131 GLY H 132 40.96 REMARK 500 GLY H 132 THR H 133 -120.95 REMARK 500 CYS E 29 CYS E 30 -123.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MAN H 301 REMARK 610 MAN D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CEX RELATED DB: PDB REMARK 900 RELATED ID: 5CEY RELATED DB: PDB DBREF 5CEZ G 32 511 UNP Q2N0S6 Q2N0S6_9HIV1 31 508 DBREF 5CEZ B 512 664 UNP Q2N0S6 Q2N0S6_9HIV1 509 661 DBREF 5CEZ L 2 213 PDB 5CEZ 5CEZ 2 213 DBREF 5CEZ H 1 215 PDB 5CEZ 5CEZ 1 215 DBREF 5CEZ D 1 222 PDB 5CEZ 5CEZ 1 222 DBREF 5CEZ E 1 216 PDB 5CEZ 5CEZ 1 216 SEQADV 5CEZ ALA G 137 UNP Q2N0S6 ASN 136 ENGINEERED MUTATION SEQADV 5CEZ ASN G 332 UNP Q2N0S6 THR 330 ENGINEERED MUTATION SEQADV 5CEZ CYS G 501 UNP Q2N0S6 ALA 498 ENGINEERED MUTATION SEQADV 5CEZ ARG G 509 UNP Q2N0S6 GLU 506 INSERTION SEQADV 5CEZ ARG G 510 UNP Q2N0S6 LYS 507 INSERTION SEQADV 5CEZ ARG G 512 UNP Q2N0S6 INSERTION SEQADV 5CEZ ARG G 513 UNP Q2N0S6 INSERTION SEQADV 5CEZ PRO B 559 UNP Q2N0S6 ILE 556 ENGINEERED MUTATION SEQADV 5CEZ CYS B 605 UNP Q2N0S6 THR 602 ENGINEERED MUTATION SEQRES 1 G 480 GLU ASN LEU TRP VAL THR VAL TYR TYR GLY VAL PRO VAL SEQRES 2 G 480 TRP LYS ASP ALA GLU THR THR LEU PHE CYS ALA SER ASP SEQRES 3 G 480 ALA LYS ALA TYR GLU THR GLU LYS HIS ASN VAL TRP ALA SEQRES 4 G 480 THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN GLU SEQRES 5 G 480 ILE HIS LEU GLU ASN VAL THR GLU GLU PHE ASN MET TRP SEQRES 6 G 480 LYS ASN ASN MET VAL GLU GLN MET HIS THR ASP ILE ILE SEQRES 7 G 480 SER LEU TRP ASP GLN SER LEU LYS PRO CYS VAL LYS LEU SEQRES 8 G 480 THR PRO LEU CYS VAL THR LEU GLN CYS THR ASN VAL THR SEQRES 9 G 480 ASN ALA ILE THR ASP ASP MET ARG GLY GLU LEU LYS ASN SEQRES 10 G 480 CYS SER PHE ASN MET THR THR GLU LEU ARG ASP LYS LYS SEQRES 11 G 480 GLN LYS VAL TYR SER LEU PHE TYR ARG LEU ASP VAL VAL SEQRES 12 G 480 GLN ILE ASN GLU ASN GLN GLY ASN ARG SER ASN ASN SER SEQRES 13 G 480 ASN LYS GLU TYR ARG LEU ILE ASN CYS ASN THR SER ALA SEQRES 14 G 480 ILE THR GLN ALA CYS PRO LYS VAL SER PHE GLU PRO ILE SEQRES 15 G 480 PRO ILE HIS TYR CYS ALA PRO ALA GLY PHE ALA ILE LEU SEQRES 16 G 480 LYS CYS LYS ASP LYS LYS PHE ASN GLY THR GLY PRO CYS SEQRES 17 G 480 PRO SER VAL SER THR VAL GLN CYS THR HIS GLY ILE LYS SEQRES 18 G 480 PRO VAL VAL SER THR GLN LEU LEU LEU ASN GLY SER LEU SEQRES 19 G 480 ALA GLU GLU GLU VAL MET ILE ARG SER GLU ASN ILE THR SEQRES 20 G 480 ASN ASN ALA LYS ASN ILE LEU VAL GLN PHE ASN THR PRO SEQRES 21 G 480 VAL GLN ILE ASN CYS THR ARG PRO ASN ASN ASN THR ARG SEQRES 22 G 480 LYS SER ILE ARG ILE GLY PRO GLY GLN ALA PHE TYR ALA SEQRES 23 G 480 THR GLY ASP ILE ILE GLY ASP ILE ARG GLN ALA HIS CYS SEQRES 24 G 480 ASN VAL SER LYS ALA THR TRP ASN GLU THR LEU GLY LYS SEQRES 25 G 480 VAL VAL LYS GLN LEU ARG LYS HIS PHE GLY ASN ASN THR SEQRES 26 G 480 ILE ILE ARG PHE ALA ASN SER SER GLY GLY ASP LEU GLU SEQRES 27 G 480 VAL THR THR HIS SER PHE ASN CYS GLY GLY GLU PHE PHE SEQRES 28 G 480 TYR CYS ASN THR SER GLY LEU PHE ASN SER THR TRP ILE SEQRES 29 G 480 SER ASN THR SER VAL GLN GLY SER ASN SER THR GLY SER SEQRES 30 G 480 ASN ASP SER ILE THR LEU PRO CYS ARG ILE LYS GLN ILE SEQRES 31 G 480 ILE ASN MET TRP GLN ARG ILE GLY GLN ALA MET TYR ALA SEQRES 32 G 480 PRO PRO ILE GLN GLY VAL ILE ARG CYS VAL SER ASN ILE SEQRES 33 G 480 THR GLY LEU ILE LEU THR ARG ASP GLY GLY SER THR ASN SEQRES 34 G 480 SER THR THR GLU THR PHE ARG PRO GLY GLY GLY ASP MET SEQRES 35 G 480 ARG ASP ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL SEQRES 36 G 480 VAL LYS ILE GLU PRO LEU GLY VAL ALA PRO THR ARG CYS SEQRES 37 G 480 LYS ARG ARG VAL VAL GLY ARG ARG ARG ARG ARG ARG SEQRES 1 B 153 ALA VAL GLY ILE GLY ALA VAL PHE LEU GLY PHE LEU GLY SEQRES 2 B 153 ALA ALA GLY SER THR MET GLY ALA ALA SER MET THR LEU SEQRES 3 B 153 THR VAL GLN ALA ARG ASN LEU LEU SER GLY ILE VAL GLN SEQRES 4 B 153 GLN GLN SER ASN LEU LEU ARG ALA PRO GLU ALA GLN GLN SEQRES 5 B 153 HIS LEU LEU LYS LEU THR VAL TRP GLY ILE LYS GLN LEU SEQRES 6 B 153 GLN ALA ARG VAL LEU ALA VAL GLU ARG TYR LEU ARG ASP SEQRES 7 B 153 GLN GLN LEU LEU GLY ILE TRP GLY CYS SER GLY LYS LEU SEQRES 8 B 153 ILE CYS CYS THR ASN VAL PRO TRP ASN SER SER TRP SER SEQRES 9 B 153 ASN ARG ASN LEU SER GLU ILE TRP ASP ASN MET THR TRP SEQRES 10 B 153 LEU GLN TRP ASP LYS GLU ILE SER ASN TYR THR GLN ILE SEQRES 11 B 153 ILE TYR GLY LEU LEU GLU GLU SER GLN ASN GLN GLN GLU SEQRES 12 B 153 LYS ASN GLU GLN ASP LEU LEU ALA LEU ASP SEQRES 1 L 218 GLY SER VAL THR SER TYR VAL ARG PRO LEU SER VAL ALA SEQRES 2 L 218 LEU GLY GLU THR ALA SER ILE SER CYS GLY ARG GLN ALA SEQRES 3 L 218 LEU GLY SER ARG ALA VAL GLN TRP TYR GLN HIS ARG PRO SEQRES 4 L 218 GLY GLN ALA PRO ILE LEU LEU ILE TYR ASN ASN GLN ASP SEQRES 5 L 218 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY THR PRO SEQRES 6 L 218 ASP ILE ASN PHE GLY THR ARG ALA THR LEU THR ILE SER SEQRES 7 L 218 GLY VAL GLU ALA GLY ASP GLU ALA ASP TYR TYR CYS HIS SEQRES 8 L 218 MET TRP ASP SER ARG SER GLY PHE SER TRP SER PHE GLY SEQRES 9 L 218 GLY ALA THR ARG LEU THR VAL LEU GLY GLN PRO LYS ALA SEQRES 10 L 218 ALA PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU SEQRES 11 L 218 LEU GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER SEQRES 12 L 218 ASP PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA SEQRES 13 L 218 ASP SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR SEQRES 14 L 218 PRO SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER SEQRES 15 L 218 TYR LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS LYS SEQRES 16 L 218 SER TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL SEQRES 17 L 218 GLU LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 H 236 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 236 PRO SER GLU THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 236 GLY SER ILE SER ASN TYR TYR TRP SER TRP ILE ARG GLN SEQRES 4 H 236 SER PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR ILE SER SEQRES 5 H 236 ASP SER GLU SER THR ASN TYR ASN PRO SER LEU LYS SER SEQRES 6 H 236 ARG VAL ILE ILE SER VAL ASP THR SER LYS ASN GLN LEU SEQRES 7 H 236 SER LEU LYS LEU ASN SER VAL THR ALA ALA ASP SER ALA SEQRES 8 H 236 ILE TYR TYR CYS ALA ARG ALA GLN GLN GLY LYS ARG ILE SEQRES 9 H 236 TYR GLY MET VAL SER PHE GLY GLU PHE PHE TYR TYR TYR SEQRES 10 H 236 TYR MET ASP VAL TRP GLY LYS GLY THR THR VAL THR VAL SEQRES 11 H 236 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 H 236 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 H 236 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 H 236 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 H 236 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 H 236 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 H 236 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 H 236 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 19 H 236 CYS ASP SEQRES 1 D 240 GLU GLY GLN LEU VAL GLN SER GLY ALA GLU LEU LYS LYS SEQRES 2 D 240 PRO GLY ALA SER VAL LYS ILE SER CYS LYS THR SER GLY SEQRES 3 D 240 TYR ARG PHE ASN PHE TYR HIS ILE ASN TRP ILE ARG GLN SEQRES 4 D 240 THR ALA GLY ARG GLY PRO GLU TRP MET GLY TRP ILE SER SEQRES 5 D 240 PRO TYR SER GLY ASP LYS ASN LEU ALA PRO ALA PHE GLN SEQRES 6 D 240 ASP ARG VAL ILE MET THR THR ASP THR GLU VAL PRO VAL SEQRES 7 D 240 THR SER PHE THR SER THR GLY ALA ALA TYR MET GLU ILE SEQRES 8 D 240 ARG ASN LEU LYS PHE ASP ASP THR GLY THR TYR PHE CYS SEQRES 9 D 240 ALA LYS GLY LEU LEU ARG ASP GLY SER SER THR TRP LEU SEQRES 10 D 240 PRO TYR LEU TRP GLY GLN GLY THR LEU LEU THR VAL SER SEQRES 11 D 240 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 12 D 240 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 13 D 240 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 14 D 240 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 15 D 240 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 16 D 240 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 17 D 240 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 18 D 240 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 19 D 240 ASP LYS GLY LEU GLU VAL SEQRES 1 E 216 GLN SER VAL LEU THR GLN SER ALA SER VAL SER GLY SER SEQRES 2 E 216 LEU GLY GLN SER VAL THR ILE SER CYS THR GLY PRO ASN SEQRES 3 E 216 SER VAL CYS CYS SER HIS LYS SER ILE SER TRP TYR GLN SEQRES 4 E 216 TRP PRO PRO GLY ARG ALA PRO THR LEU ILE ILE TYR GLU SEQRES 5 E 216 ASP ASN GLU ARG ALA PRO GLY ILE SER PRO ARG PHE SER SEQRES 6 E 216 GLY TYR LYS SER TYR TRP SER ALA TYR LEU THR ILE SER SEQRES 7 E 216 ASP LEU ARG PRO GLU ASP GLU THR THR TYR TYR CYS CYS SEQRES 8 E 216 SER TYR THR HIS ASN SER GLY CYS VAL PHE GLY THR GLY SEQRES 9 E 216 THR LYS VAL SER VAL LEU GLY GLN SER LYS ALA ASN PRO SEQRES 10 E 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 E 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 E 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 E 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 E 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 E 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 E 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 E 216 THR VAL ALA PRO THR GLU CYS SER HET NAG A 1 14 HET NAG A 2 14 HET BMA A 3 11 HET MAN A 4 11 HET MAN A 5 11 HET MAN A 6 11 HET MAN A 7 11 HET NAG C 1 14 HET NAG C 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG I 1 14 HET NAG I 2 14 HET NAG J 1 14 HET NAG J 2 14 HET NAG K 1 14 HET NAG K 2 14 HET NAG M 1 14 HET NAG M 2 14 HET NAG N 1 14 HET NAG N 2 14 HET BMA N 3 11 HET MAN N 4 11 HET MAN N 5 11 HET NAG O 1 14 HET NAG O 2 14 HET BMA O 3 11 HET MAN O 4 11 HET NAG P 1 14 HET NAG P 2 14 HET BMA P 3 11 HET MAN P 4 11 HET MAN P 5 11 HET MAN P 6 11 HET NAG Q 1 14 HET NAG Q 2 14 HET BMA Q 3 11 HET MAN Q 4 11 HET MAN Q 5 11 HET MAN Q 6 11 HET MAN Q 7 11 HET MAN Q 8 11 HET MAN Q 9 11 HET NAG G 610 14 HET NAG G 611 14 HET NAG G 616 14 HET NAG B 701 14 HET NAG B 702 14 HET NAG B 703 14 HET MAN H 301 11 HET MAN D 301 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 7 NAG 28(C8 H15 N O6) FORMUL 7 BMA 5(C6 H12 O6) FORMUL 7 MAN 18(C6 H12 O6) HELIX 1 AA1 ASN G 98 LYS G 117 1 20 HELIX 2 AA2 LEU G 122 VAL G 127 5 6 HELIX 3 AA3 TYR G 177 LEU G 179 5 3 HELIX 4 AA4 ASN G 195 THR G 198 5 4 HELIX 5 AA5 SER G 334 ARG G 350 1 17 HELIX 6 AA6 LYS G 351 PHE G 353 5 3 HELIX 7 AA7 ASP G 368 THR G 373 1 6 HELIX 8 AA8 ASN G 425 ARG G 429 5 5 HELIX 9 AA9 MET G 475 TYR G 484 1 10 HELIX 10 AB1 LEU B 523 SER B 528 5 6 HELIX 11 AB2 THR B 529 SER B 534 1 6 HELIX 12 AB3 THR B 536 ASN B 543 1 8 HELIX 13 AB4 THR B 569 TRP B 596 1 28 HELIX 14 AB5 ASN B 618 ASP B 624 1 7 HELIX 15 AB6 THR B 627 SER B 636 1 10 HELIX 16 AB7 TYR B 638 SER B 649 1 12 HELIX 17 AB8 GLN B 650 ALA B 662 1 13 HELIX 18 AB9 SER L 122 ALA L 128 1 7 HELIX 19 AC1 THR L 182 HIS L 189 1 8 HELIX 20 AC2 SER H 28 TYR H 32 5 5 HELIX 21 AC3 THR H 83 SER H 87 5 5 HELIX 22 AC4 ARG D 28 TYR D 32 5 5 HELIX 23 AC5 PRO D 61 GLN D 64 5 4 HELIX 24 AC6 LYS D 83 THR D 87 5 5 HELIX 25 AC7 SER D 156 ALA D 158 5 3 HELIX 26 AC8 LYS D 201 ASN D 204 5 4 HELIX 27 AC9 ASP D 217 VAL D 222 1 6 HELIX 28 AD1 CYS E 29 LYS E 33 5 5 HELIX 29 AD2 ARG E 81 GLU E 85 5 5 HELIX 30 AD3 SER E 125 GLN E 130 1 6 HELIX 31 AD4 THR E 185 SER E 191 1 7 SHEET 1 AA1 3 LEU G 494 THR G 499 0 SHEET 2 AA1 3 TRP G 35 TYR G 40 -1 N TYR G 39 O GLY G 495 SHEET 3 AA1 3 ILE B 603 PRO B 609 -1 O VAL B 608 N VAL G 36 SHEET 1 AA2 5 TRP G 45 ASP G 47 0 SHEET 2 AA2 5 TYR G 486 ILE G 491 -1 O LYS G 490 N LYS G 46 SHEET 3 AA2 5 PHE G 223 CYS G 228 -1 N LEU G 226 O LYS G 487 SHEET 4 AA2 5 VAL G 242 VAL G 245 -1 O SER G 243 N LYS G 227 SHEET 5 AA2 5 GLU G 83 LEU G 86 -1 N ILE G 84 O THR G 244 SHEET 1 AA3 2 PHE G 53 ALA G 55 0 SHEET 2 AA3 2 HIS G 216 CYS G 218 -1 O CYS G 218 N PHE G 53 SHEET 1 AA4 2 GLU G 91 PHE G 93 0 SHEET 2 AA4 2 GLY G 237 CYS G 239 -1 O CYS G 239 N GLU G 91 SHEET 1 AA5 5 LYS G 169 PHE G 176 0 SHEET 2 AA5 5 LYS G 155 THR G 162 -1 N LYS G 155 O PHE G 176 SHEET 3 AA5 5 LEU G 129 ASN G 133 -1 N THR G 132 O ASN G 156 SHEET 4 AA5 5 GLU G 190 LEU G 193 -1 O TYR G 191 N LEU G 129 SHEET 5 AA5 5 VAL G 181 GLN G 183 -1 N VAL G 182 O ARG G 192 SHEET 1 AA6 3 ILE G 201 GLN G 203 0 SHEET 2 AA6 3 ALA G 433 TYR G 435 1 O TYR G 435 N THR G 202 SHEET 3 AA6 3 ILE G 423 ILE G 424 -1 N ILE G 424 O MET G 434 SHEET 1 AA7 7 LEU G 260 LEU G 261 0 SHEET 2 AA7 7 GLY G 441 ARG G 456 -1 O GLY G 451 N LEU G 260 SHEET 3 AA7 7 ILE G 284 ASN G 302 -1 N PHE G 288 O THR G 450 SHEET 4 AA7 7 HIS G 330 VAL G 333 -1 O HIS G 330 N THR G 297 SHEET 5 AA7 7 ILE G 414 LYS G 421 -1 O ILE G 414 N VAL G 333 SHEET 6 AA7 7 GLU G 381 CYS G 385 -1 N TYR G 384 O ARG G 419 SHEET 7 AA7 7 HIS G 374 CYS G 378 -1 N CYS G 378 O GLU G 381 SHEET 1 AA8 6 MET G 271 SER G 274 0 SHEET 2 AA8 6 ILE G 284 ASN G 302 -1 O LEU G 285 N ARG G 273 SHEET 3 AA8 6 GLY G 441 ARG G 456 -1 O THR G 450 N PHE G 288 SHEET 4 AA8 6 THR G 465 PRO G 470 -1 O ARG G 469 N THR G 455 SHEET 5 AA8 6 ILE G 358 PHE G 361 1 N ILE G 358 O GLU G 466 SHEET 6 AA8 6 SER G 393 TRP G 395 -1 O TRP G 395 N ILE G 359 SHEET 1 AA9 2 ARG G 304 ARG G 308 0 SHEET 2 AA9 2 ALA G 316 THR G 320 -1 O ALA G 319 N LYS G 305 SHEET 1 AB1 5 ARG L 9 ALA L 14 0 SHEET 2 AB1 5 THR L 102 LEU L 107 1 O LEU L 107 N VAL L 13 SHEET 3 AB1 5 ALA L 84 HIS L 89 -1 N ALA L 84 O LEU L 104 SHEET 4 AB1 5 GLN L 34 HIS L 38 -1 N HIS L 38 O ASP L 85 SHEET 5 AB1 5 ILE L 45 ILE L 48 -1 O ILE L 45 N GLN L 37 SHEET 1 AB2 3 ALA L 19 SER L 22 0 SHEET 2 AB2 3 THR L 72 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 3 AB2 3 PHE L 62 GLY L 64 -1 N SER L 63 O THR L 74 SHEET 1 AB3 4 SER L 115 PHE L 119 0 SHEET 2 AB3 4 ALA L 131 PHE L 140 -1 O SER L 138 N SER L 115 SHEET 3 AB3 4 TYR L 173 LEU L 181 -1 O LEU L 181 N ALA L 131 SHEET 4 AB3 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 AB4 4 SER L 115 PHE L 119 0 SHEET 2 AB4 4 ALA L 131 PHE L 140 -1 O SER L 138 N SER L 115 SHEET 3 AB4 4 TYR L 173 LEU L 181 -1 O LEU L 181 N ALA L 131 SHEET 4 AB4 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 AB5 4 SER L 154 PRO L 155 0 SHEET 2 AB5 4 VAL L 145 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 AB5 4 TYR L 192 HIS L 198 -1 O SER L 193 N LYS L 150 SHEET 4 AB5 4 SER L 201 VAL L 207 -1 O VAL L 207 N TYR L 192 SHEET 1 AB6 4 LEU H 4 SER H 7 0 SHEET 2 AB6 4 LEU H 18 VAL H 24 -1 O THR H 21 N SER H 7 SHEET 3 AB6 4 GLN H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 AB6 4 VAL H 67 VAL H 71 -1 N SER H 70 O SER H 79 SHEET 1 AB7 6 LEU H 11 VAL H 12 0 SHEET 2 AB7 6 THR H 105 VAL H 109 1 O THR H 108 N VAL H 12 SHEET 3 AB7 6 ALA H 88 ILE H 100A-1 N TYR H 90 O THR H 105 SHEET 4 AB7 6 TYR H 33 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 AB7 6 LEU H 45 ILE H 51 -1 O ILE H 51 N TRP H 34 SHEET 6 AB7 6 THR H 57 TYR H 59 -1 O ASN H 58 N TYR H 50 SHEET 1 AB8 4 LEU H 11 VAL H 12 0 SHEET 2 AB8 4 THR H 105 VAL H 109 1 O THR H 108 N VAL H 12 SHEET 3 AB8 4 ALA H 88 ILE H 100A-1 N TYR H 90 O THR H 105 SHEET 4 AB8 4 PHE H 100J TRP H 101 -1 O TYR H 100O N GLN H 96 SHEET 1 AB9 4 VAL H 119 LEU H 122 0 SHEET 2 AB9 4 THR H 133 TYR H 143 -1 O GLY H 137 N LEU H 122 SHEET 3 AB9 4 TYR H 174 PRO H 183 -1 O SER H 178 N CYS H 138 SHEET 4 AB9 4 VAL H 161 THR H 163 -1 N HIS H 162 O VAL H 179 SHEET 1 AC1 4 VAL H 119 LEU H 122 0 SHEET 2 AC1 4 THR H 133 TYR H 143 -1 O GLY H 137 N LEU H 122 SHEET 3 AC1 4 TYR H 174 PRO H 183 -1 O SER H 178 N CYS H 138 SHEET 4 AC1 4 VAL H 167 LEU H 168 -1 N VAL H 167 O SER H 175 SHEET 1 AC2 3 THR H 149 TRP H 152 0 SHEET 2 AC2 3 ILE H 193 HIS H 198 -1 O ASN H 195 N SER H 151 SHEET 3 AC2 3 THR H 203 LYS H 208 -1 O VAL H 205 N VAL H 196 SHEET 1 AC3 4 GLN D 3 GLN D 6 0 SHEET 2 AC3 4 VAL D 18 TYR D 27 -1 O LYS D 23 N VAL D 5 SHEET 3 AC3 4 SER D 74 ILE D 82 -1 O MET D 80 N ILE D 20 SHEET 4 AC3 4 VAL D 67 THR D 71 -1 N THR D 70 O TYR D 79 SHEET 1 AC4 4 GLN D 3 GLN D 6 0 SHEET 2 AC4 4 VAL D 18 TYR D 27 -1 O LYS D 23 N VAL D 5 SHEET 3 AC4 4 SER D 74 ILE D 82 -1 O MET D 80 N ILE D 20 SHEET 4 AC4 4 VAL D 72C PRO D 72D-1 N VAL D 72C O THR D 75 SHEET 1 AC5 6 GLU D 10 LYS D 12 0 SHEET 2 AC5 6 THR D 107 VAL D 111 1 O THR D 110 N LYS D 12 SHEET 3 AC5 6 GLY D 88 LYS D 94 -1 N GLY D 88 O LEU D 109 SHEET 4 AC5 6 ILE D 34 THR D 40 -1 N ILE D 37 O PHE D 91 SHEET 5 AC5 6 GLY D 44 ILE D 51 -1 O GLU D 46 N ARG D 38 SHEET 6 AC5 6 LYS D 57 LEU D 59 -1 O ASN D 58 N TRP D 50 SHEET 1 AC6 4 GLU D 10 LYS D 12 0 SHEET 2 AC6 4 THR D 107 VAL D 111 1 O THR D 110 N LYS D 12 SHEET 3 AC6 4 GLY D 88 LYS D 94 -1 N GLY D 88 O LEU D 109 SHEET 4 AC6 4 LEU D 102 TRP D 103 -1 O LEU D 102 N LYS D 94 SHEET 1 AC7 4 SER D 120 SER D 130 0 SHEET 2 AC7 4 THR D 135 TYR D 145 -1 O LEU D 141 N PHE D 122 SHEET 3 AC7 4 TYR D 176 PRO D 185 -1 O VAL D 182 N LEU D 138 SHEET 4 AC7 4 VAL D 163 THR D 165 -1 N HIS D 164 O VAL D 181 SHEET 1 AC8 4 SER D 120 SER D 130 0 SHEET 2 AC8 4 THR D 135 TYR D 145 -1 O LEU D 141 N PHE D 122 SHEET 3 AC8 4 TYR D 176 PRO D 185 -1 O VAL D 182 N LEU D 138 SHEET 4 AC8 4 VAL D 169 LEU D 170 -1 N VAL D 169 O SER D 177 SHEET 1 AC9 3 THR D 151 TRP D 154 0 SHEET 2 AC9 3 ILE D 195 HIS D 200 -1 O ASN D 197 N SER D 153 SHEET 3 AC9 3 THR D 205 ARG D 210 -1 O VAL D 207 N VAL D 198 SHEET 1 AD1 4 THR E 5 GLN E 6 0 SHEET 2 AD1 4 VAL E 18 THR E 23 -1 O THR E 23 N THR E 5 SHEET 3 AD1 4 SER E 72 ILE E 77 -1 O ILE E 77 N VAL E 18 SHEET 4 AD1 4 PHE E 64 LYS E 68 -1 N TYR E 67 O TYR E 74 SHEET 1 AD2 5 SER E 9 SER E 13 0 SHEET 2 AD2 5 THR E 105 LEU E 110 1 O LEU E 110 N GLY E 12 SHEET 3 AD2 5 THR E 87 TYR E 93 -1 N TYR E 88 O THR E 105 SHEET 4 AD2 5 SER E 34 GLN E 39 -1 N TYR E 38 O TYR E 89 SHEET 5 AD2 5 THR E 47 ILE E 50 -1 O THR E 47 N GLN E 39 SHEET 1 AD3 4 SER E 9 SER E 13 0 SHEET 2 AD3 4 THR E 105 LEU E 110 1 O LEU E 110 N GLY E 12 SHEET 3 AD3 4 THR E 87 TYR E 93 -1 N TYR E 88 O THR E 105 SHEET 4 AD3 4 VAL E 100 PHE E 101 -1 O VAL E 100 N SER E 92 SHEET 1 AD4 4 SER E 118 PHE E 122 0 SHEET 2 AD4 4 ALA E 134 PHE E 143 -1 O VAL E 137 N PHE E 122 SHEET 3 AD4 4 TYR E 176 LEU E 184 -1 O LEU E 184 N ALA E 134 SHEET 4 AD4 4 VAL E 163 THR E 165 -1 N GLU E 164 O TYR E 181 SHEET 1 AD5 4 SER E 118 PHE E 122 0 SHEET 2 AD5 4 ALA E 134 PHE E 143 -1 O VAL E 137 N PHE E 122 SHEET 3 AD5 4 TYR E 176 LEU E 184 -1 O LEU E 184 N ALA E 134 SHEET 4 AD5 4 SER E 169 LYS E 170 -1 N SER E 169 O ALA E 177 SHEET 1 AD6 4 SER E 157 PRO E 158 0 SHEET 2 AD6 4 THR E 149 ALA E 154 -1 N ALA E 154 O SER E 157 SHEET 3 AD6 4 TYR E 195 THR E 200 -1 O GLN E 198 N ALA E 151 SHEET 4 AD6 4 THR E 205 VAL E 210 -1 O LYS E 208 N CYS E 197 SSBOND 1 CYS G 54 CYS G 74 1555 1555 2.02 SSBOND 2 CYS G 119 CYS G 205 1555 1555 2.02 SSBOND 3 CYS G 126 CYS G 196 1555 1555 2.04 SSBOND 4 CYS G 131 CYS G 157 1555 1555 2.03 SSBOND 5 CYS G 218 CYS G 247 1555 1555 2.03 SSBOND 6 CYS G 228 CYS G 239 1555 1555 2.04 SSBOND 7 CYS G 296 CYS G 331 1555 1555 2.03 SSBOND 8 CYS G 378 CYS G 445 1555 1555 2.04 SSBOND 9 CYS G 385 CYS G 418 1555 1555 2.04 SSBOND 10 CYS G 501 CYS B 605 1555 1555 2.03 SSBOND 11 CYS B 598 CYS B 604 1555 1555 2.03 SSBOND 12 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 13 CYS L 135 CYS L 194 1555 1555 2.04 SSBOND 14 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 15 CYS H 138 CYS H 194 1555 1555 2.04 SSBOND 16 CYS D 22 CYS D 92 1555 1555 2.03 SSBOND 17 CYS D 140 CYS D 196 1555 1555 2.04 SSBOND 18 CYS E 22 CYS E 90 1555 1555 2.04 SSBOND 19 CYS E 91 CYS E 99 1555 1555 2.06 SSBOND 20 CYS E 138 CYS E 197 1555 1555 2.03 LINK ND2 ASN G 88 C1 NAG P 1 1555 1555 1.43 LINK ND2 ASN G 133 C1 NAG M 1 1555 1555 1.43 LINK ND2 ASN G 156 C1 NAG N 1 1555 1555 1.44 LINK ND2 ASN G 160 C1 NAG G 610 1555 1555 1.43 LINK ND2 ASN G 197 C1 NAG K 1 1555 1555 1.45 LINK ND2 ASN G 234 C1 NAG J 1 1555 1555 1.45 LINK ND2 ASN G 262 C1 NAG A 1 1555 1555 1.44 LINK ND2 ASN G 276 C1 NAG G 611 1555 1555 1.43 LINK ND2 ASN G 295 C1 NAG F 1 1555 1555 1.42 LINK ND2 ASN G 301 C1 NAG O 1 1555 1555 1.44 LINK ND2 ASN G 332 C1 NAG Q 1 1555 1555 1.44 LINK ND2 ASN G 363 C1 NAG G 616 1555 1555 1.44 LINK ND2 ASN G 386 C1 NAG I 1 1555 1555 1.46 LINK ND2 ASN G 448 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 611 C1 NAG B 703 1555 1555 1.44 LINK ND2 ASN B 618 C1 NAG B 702 1555 1555 1.45 LINK ND2 ASN B 637 C1 NAG B 701 1555 1555 1.42 LINK NE2 GLN L 52 O3 MAN Q 5 1555 1555 1.41 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.19 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.34 LINK O3 BMA A 3 C1 MAN A 4 1555 1555 1.45 LINK O6 BMA A 3 C1 MAN A 7 1555 1555 1.44 LINK O2 MAN A 4 C1 MAN A 5 1555 1555 1.33 LINK O2 MAN A 5 C1 MAN A 6 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.44 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.44 LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.44 LINK O4 NAG M 1 C1 NAG M 2 1555 1555 1.44 LINK O4 NAG N 1 C1 NAG N 2 1555 1555 1.44 LINK O4 NAG N 2 C1 BMA N 3 1555 1555 1.44 LINK O3 BMA N 3 C1 MAN N 4 1555 1555 1.44 LINK O6 BMA N 3 C1 MAN N 5 1555 1555 1.44 LINK O4 NAG O 1 C1 NAG O 2 1555 1555 1.44 LINK O4 NAG O 2 C1 BMA O 3 1555 1555 1.44 LINK O3 BMA O 3 C1 MAN O 4 1555 1555 1.44 LINK O4 NAG P 1 C1 NAG P 2 1555 1555 1.42 LINK O4 NAG P 2 C1 BMA P 3 1555 1555 1.44 LINK O6 BMA P 3 C1 MAN P 4 1555 1555 1.45 LINK O3 BMA P 3 C1 MAN P 6 1555 1555 1.44 LINK O3 MAN P 4 C1 MAN P 5 1555 1555 1.19 LINK O4 NAG Q 1 C1 NAG Q 2 1555 1555 1.44 LINK O4 NAG Q 2 C1 BMA Q 3 1555 1555 1.34 LINK O3 BMA Q 3 C1 MAN Q 4 1555 1555 1.50 LINK O6 BMA Q 3 C1 MAN Q 7 1555 1555 1.44 LINK O2 MAN Q 4 C1 MAN Q 5 1555 1555 1.44 LINK O2 MAN Q 5 C1 MAN Q 6 1555 1555 1.44 LINK O6 MAN Q 7 C1 MAN Q 8 1555 1555 1.44 LINK O2 MAN Q 8 C1 MAN Q 9 1555 1555 1.44 CISPEP 1 ASN G 188 LYS G 189 0 3.94 CISPEP 2 SER B 546 GLY B 547 0 -3.43 CISPEP 3 SER B 553 ASN B 554 0 -0.28 CISPEP 4 ALA B 558 PRO B 559 0 -6.03 CISPEP 5 TYR L 141 PRO L 142 0 -3.15 CISPEP 6 PHE H 144 PRO H 145 0 -6.98 CISPEP 7 GLU H 146 PRO H 147 0 -0.02 CISPEP 8 LEU H 187 GLY H 188 0 -1.03 CISPEP 9 GLY H 188 THR H 189 0 0.69 CISPEP 10 PHE D 146 PRO D 147 0 -2.83 CISPEP 11 GLU D 148 PRO D 149 0 -1.35 CISPEP 12 ALA E 131 ASN E 132 0 5.65 CISPEP 13 TYR E 144 PRO E 145 0 1.89 CRYST1 127.978 127.978 316.124 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007814 0.004511 0.000000 0.00000 SCALE2 0.000000 0.009023 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003163 0.00000