HEADER HYDROLASE 09-JUL-15 5CG7 OBSLTE 01-MAY-24 5CG7 8J7C TITLE LEISHMANIA SIAMENSIS TRIOSEPHOSPHATE ISOMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA SP. 'SIAMENSIS'; SOURCE 3 ORGANISM_TAXID: 438838; SOURCE 4 GENE: TIM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TIM BARREL, C2 STRUCTURE, CACODYLATE BINDING CYS57, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.KUAPRASERT,P.RIANGRUNGROJ,W.PORNTHANAKASEM,J.ATTARATAYA, AUTHOR 2 P.SIRIMONTREE,M.MUNGTHIN,S.LEELAYOOVA,W.SUGINTA,K.CHOOWONGKOMON, AUTHOR 3 U.LEARTSAKULPANICH REVDAT 3 01-MAY-24 5CG7 1 OBSLTE REVDAT 2 08-NOV-23 5CG7 1 REMARK REVDAT 1 13-JUL-16 5CG7 0 JRNL AUTH B.KUAPRASERT,P.RIANGRUNGROJ,W.PORNTHANAKASEM,P.SIRIMONTREE, JRNL AUTH 2 J.ATTARATAYA,M.MUNGTHIN,S.LEELAYOOVA,W.SUGINTA, JRNL AUTH 3 K.CHOOWONGKOMON,U.LEARTSAKULPANICH JRNL TITL CRYSTAL STRUCTURE OF LEISHMANIA SIAMENSIS TRIOSEPHOSPHATE JRNL TITL 2 ISOMERASE AT 1.88 ANGSTROMS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 93.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 43856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2315 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2939 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3741 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 474 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : 0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.54000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.082 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3848 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5232 ; 1.965 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 6.452 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;40.752 ;25.263 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 641 ;12.981 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.952 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 615 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2836 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1966 ; 1.561 ; 1.674 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2452 ; 2.261 ; 2.489 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1882 ; 2.763 ; 1.888 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5CG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000210883. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLRI REMARK 200 BEAMLINE : BL7.2W REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5500 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : DIFFRACTOMETER MOUNTED ON MARDTB REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.1.1 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46171 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.879 REMARK 200 RESOLUTION RANGE LOW (A) : 93.151 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : 0.45800 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 09.12.2013 REMARK 200 STARTING MODEL: 4GNJ REMARK 200 REMARK 200 REMARK: ROD SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE HYDRATE, 0.1M REMARK 280 SODIUM CACODYLATE TRIHYDRATE, 18% PEG 8000, PH 5.9, MICROBATCH, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.72000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.72000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -18.34307 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 93.15114 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 174 REMARK 465 THR A 175 REMARK 465 GLY A 176 REMARK 465 LYS A 177 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 174 REMARK 465 THR B 175 REMARK 465 GLY B 176 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 571 O HOH A 584 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 242 CD GLU A 242 OE2 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 135 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 135 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG B 135 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 135 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 14 -137.00 51.77 REMARK 500 CYS A 15 64.59 -102.79 REMARK 500 LYS B 14 -134.20 47.80 REMARK 500 CYS B 15 60.79 -106.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 730 DISTANCE = 6.06 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 DBREF 5CG7 A 1 251 UNP I2APN2 I2APN2_9TRYP 1 251 DBREF 5CG7 B 1 251 UNP I2APN2 I2APN2_9TRYP 1 251 SEQADV 5CG7 MET A -19 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 GLY A -18 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 SER A -17 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 SER A -16 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 HIS A -15 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 HIS A -14 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 HIS A -13 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 HIS A -12 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 HIS A -11 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 HIS A -10 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 SER A -9 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 SER A -8 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 GLY A -7 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 LEU A -6 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 VAL A -5 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 PRO A -4 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 ARG A -3 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 GLY A -2 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 SER A -1 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 HIS A 0 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 MET B -19 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 GLY B -18 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 SER B -17 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 SER B -16 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 HIS B -15 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 HIS B -14 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 HIS B -13 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 HIS B -12 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 HIS B -11 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 HIS B -10 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 SER B -9 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 SER B -8 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 GLY B -7 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 LEU B -6 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 VAL B -5 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 PRO B -4 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 ARG B -3 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 GLY B -2 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 SER B -1 UNP I2APN2 EXPRESSION TAG SEQADV 5CG7 HIS B 0 UNP I2APN2 EXPRESSION TAG SEQRES 1 A 271 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 271 LEU VAL PRO ARG GLY SER HIS MET SER ALA LYS PRO GLN SEQRES 3 A 271 PRO ILE VAL ALA ALA ASN TRP LYS CYS ASN GLY THR THR SEQRES 4 A 271 ALA SER ILE GLU LYS LEU VAL GLN VAL LEU ASN GLU HIS SEQRES 5 A 271 GLN ILE ASP HIS ASP VAL GLN CYS VAL VAL ALA PRO SER SEQRES 6 A 271 PHE VAL HIS ILE PRO MET VAL GLN ALA LYS LEU CAS ASN SEQRES 7 A 271 PRO LYS TYR ALA VAL SER ALA GLU ASN ALA ILE ALA LYS SEQRES 8 A 271 SER GLY ALA PHE THR GLY GLU VAL SER MET PRO ILE LEU SEQRES 9 A 271 LYS ASP LEU GLY VAL SER TRP VAL ILE LEU GLY HIS SER SEQRES 10 A 271 GLU ARG ARG THR TYR TYR GLY GLU THR ASP GLY VAL VAL SEQRES 11 A 271 ALA GLN LYS VAL ALA ASP ALA TYR ASN GLN GLY PHE MET SEQRES 12 A 271 VAL ILE ALA CYS ILE GLY GLU THR LEU GLN GLN ARG GLU SEQRES 13 A 271 ALA ASN GLN THR ALA LYS VAL VAL LEU SER GLN THR ALA SEQRES 14 A 271 ALA ILE ALA ALA LYS LEU PRO LYS GLU ALA TRP SER GLN SEQRES 15 A 271 ILE VAL LEU ALA TYR GLU PRO VAL TRP ALA ILE GLY THR SEQRES 16 A 271 GLY LYS VAL ALA THR PRO GLU GLN ALA GLN GLU VAL HIS SEQRES 17 A 271 ALA LEU LEU ARG GLN TRP VAL SER GLU LYS ILE GLY ASN SEQRES 18 A 271 GLY VAL ALA THR LYS LEU ARG ILE LEU TYR GLY GLY SER SEQRES 19 A 271 VAL THR ALA GLY ASN ALA LYS THR LEU TYR MET LYS PRO SEQRES 20 A 271 ASP ILE ASN GLY PHE LEU VAL GLY GLY ALA SER LEU LYS SEQRES 21 A 271 PRO GLU PHE ARG ASP ILE ILE ASP ALA THR ARG SEQRES 1 B 271 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 271 LEU VAL PRO ARG GLY SER HIS MET SER ALA LYS PRO GLN SEQRES 3 B 271 PRO ILE VAL ALA ALA ASN TRP LYS CYS ASN GLY THR THR SEQRES 4 B 271 ALA SER ILE GLU LYS LEU VAL GLN VAL LEU ASN GLU HIS SEQRES 5 B 271 GLN ILE ASP HIS ASP VAL GLN CYS VAL VAL ALA PRO SER SEQRES 6 B 271 PHE VAL HIS ILE PRO MET VAL GLN ALA LYS LEU CAS ASN SEQRES 7 B 271 PRO LYS TYR ALA VAL SER ALA GLU ASN ALA ILE ALA LYS SEQRES 8 B 271 SER GLY ALA PHE THR GLY GLU VAL SER MET PRO ILE LEU SEQRES 9 B 271 LYS ASP LEU GLY VAL SER TRP VAL ILE LEU GLY HIS SER SEQRES 10 B 271 GLU ARG ARG THR TYR TYR GLY GLU THR ASP GLY VAL VAL SEQRES 11 B 271 ALA GLN LYS VAL ALA ASP ALA TYR ASN GLN GLY PHE MET SEQRES 12 B 271 VAL ILE ALA CYS ILE GLY GLU THR LEU GLN GLN ARG GLU SEQRES 13 B 271 ALA ASN GLN THR ALA LYS VAL VAL LEU SER GLN THR ALA SEQRES 14 B 271 ALA ILE ALA ALA LYS LEU PRO LYS GLU ALA TRP SER GLN SEQRES 15 B 271 ILE VAL LEU ALA TYR GLU PRO VAL TRP ALA ILE GLY THR SEQRES 16 B 271 GLY LYS VAL ALA THR PRO GLU GLN ALA GLN GLU VAL HIS SEQRES 17 B 271 ALA LEU LEU ARG GLN TRP VAL SER GLU LYS ILE GLY ASN SEQRES 18 B 271 GLY VAL ALA THR LYS LEU ARG ILE LEU TYR GLY GLY SER SEQRES 19 B 271 VAL THR ALA GLY ASN ALA LYS THR LEU TYR MET LYS PRO SEQRES 20 B 271 ASP ILE ASN GLY PHE LEU VAL GLY GLY ALA SER LEU LYS SEQRES 21 B 271 PRO GLU PHE ARG ASP ILE ILE ASP ALA THR ARG MODRES 5CG7 CAS A 57 CYS MODIFIED RESIDUE MODRES 5CG7 CAS B 57 CYS MODIFIED RESIDUE HET CAS A 57 9 HET CAS B 57 9 HET GOL A 301 12 HET GOL B 401 12 HETNAM CAS S-(DIMETHYLARSENIC)CYSTEINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CAS 2(C5 H12 AS N O2 S) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *474(H2 O) HELIX 1 AA1 THR A 18 HIS A 32 1 15 HELIX 2 AA2 SER A 45 VAL A 47 5 3 HELIX 3 AA3 HIS A 48 LEU A 56 1 9 HELIX 4 AA4 SER A 80 GLY A 88 1 9 HELIX 5 AA5 HIS A 96 TYR A 103 1 8 HELIX 6 AA6 THR A 106 GLN A 120 1 15 HELIX 7 AA7 THR A 131 ALA A 137 1 7 HELIX 8 AA8 GLN A 139 LYS A 154 1 16 HELIX 9 AA9 LEU A 155 SER A 161 5 7 HELIX 10 AB1 PRO A 169 ILE A 173 5 5 HELIX 11 AB2 THR A 180 ILE A 199 1 20 HELIX 12 AB3 GLY A 200 LEU A 207 1 8 HELIX 13 AB4 ASN A 219 MET A 225 1 7 HELIX 14 AB5 GLY A 235 PRO A 241 5 7 HELIX 15 AB6 GLU A 242 ALA A 249 1 8 HELIX 16 AB7 THR B 18 HIS B 32 1 15 HELIX 17 AB8 SER B 45 VAL B 47 5 3 HELIX 18 AB9 HIS B 48 LEU B 56 1 9 HELIX 19 AC1 SER B 80 GLY B 88 1 9 HELIX 20 AC2 HIS B 96 TYR B 103 1 8 HELIX 21 AC3 THR B 106 GLN B 120 1 15 HELIX 22 AC4 THR B 131 ALA B 137 1 7 HELIX 23 AC5 GLN B 139 LYS B 154 1 16 HELIX 24 AC6 LEU B 155 SER B 161 5 7 HELIX 25 AC7 PRO B 169 ILE B 173 5 5 HELIX 26 AC8 THR B 180 ILE B 199 1 20 HELIX 27 AC9 GLY B 200 LEU B 207 1 8 HELIX 28 AD1 ASN B 219 MET B 225 1 7 HELIX 29 AD2 GLY B 235 PRO B 241 5 7 HELIX 30 AD3 GLU B 242 ALA B 249 1 8 SHEET 1 AA1 9 ILE A 8 ASN A 12 0 SHEET 2 AA1 9 GLN A 39 ALA A 43 1 O VAL A 41 N ALA A 11 SHEET 3 AA1 9 TYR A 61 ALA A 65 1 O SER A 64 N VAL A 42 SHEET 4 AA1 9 TRP A 91 LEU A 94 1 O TRP A 91 N ALA A 65 SHEET 5 AA1 9 MET A 123 ILE A 128 1 O CYS A 127 N LEU A 94 SHEET 6 AA1 9 ILE A 163 TYR A 167 1 O VAL A 164 N ALA A 126 SHEET 7 AA1 9 ARG A 208 TYR A 211 1 O LEU A 210 N LEU A 165 SHEET 8 AA1 9 GLY A 231 VAL A 234 1 O GLY A 231 N TYR A 211 SHEET 9 AA1 9 ILE A 8 ASN A 12 1 N ALA A 10 O VAL A 234 SHEET 1 AA2 9 ILE B 8 ASN B 12 0 SHEET 2 AA2 9 GLN B 39 ALA B 43 1 O VAL B 41 N ALA B 11 SHEET 3 AA2 9 TYR B 61 ALA B 65 1 O SER B 64 N VAL B 42 SHEET 4 AA2 9 TRP B 91 LEU B 94 1 O TRP B 91 N ALA B 65 SHEET 5 AA2 9 MET B 123 ILE B 128 1 O CYS B 127 N LEU B 94 SHEET 6 AA2 9 ILE B 163 TYR B 167 1 O VAL B 164 N ALA B 126 SHEET 7 AA2 9 ARG B 208 TYR B 211 1 O LEU B 210 N LEU B 165 SHEET 8 AA2 9 GLY B 231 VAL B 234 1 O GLY B 231 N TYR B 211 SHEET 9 AA2 9 ILE B 8 ASN B 12 1 N ALA B 10 O VAL B 234 LINK C LEU A 56 N CAS A 57 1555 1555 1.35 LINK C CAS A 57 N ASN A 58 1555 1555 1.35 LINK C LEU B 56 N CAS B 57 1555 1555 1.35 LINK C CAS B 57 N ASN B 58 1555 1555 1.34 SITE 1 AC1 11 LEU A 56 CAS A 57 ASN A 58 PRO A 59 SITE 2 AC1 11 TYR A 61 LYS A 142 LEU A 145 SER A 146 SITE 3 AC1 11 TRP A 194 HOH A 461 HOH A 528 SITE 1 AC2 13 LEU B 56 CAS B 57 ASN B 58 PRO B 59 SITE 2 AC2 13 TYR B 61 LYS B 142 LEU B 145 SER B 146 SITE 3 AC2 13 ALA B 149 TRP B 194 HOH B 509 HOH B 570 SITE 4 AC2 13 HOH B 653 CRYST1 81.440 76.450 94.940 90.00 101.14 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012279 0.000000 0.002418 0.00000 SCALE2 0.000000 0.013080 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010735 0.00000