HEADER HYDROLASE 09-JUL-15 5CGW TITLE CRYSTAL STRUCTURE OF FOX-4 CEPHAMYCINASE MUTANT Y150F COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-382; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: FOX-4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHMTEV KEYWDS BETA-LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,S.LEFURGY,S.C.ALMO REVDAT 2 27-SEP-23 5CGW 1 JRNL REMARK LINK REVDAT 1 03-FEB-16 5CGW 0 JRNL AUTH S.T.LEFURGY,V.N.MALASHKEVICH,J.T.AGUILAN,E.NIEVES, JRNL AUTH 2 E.C.MUNDORFF,B.BIJU,M.A.NOEL,R.TORO,D.BAIWIR, JRNL AUTH 3 K.M.PAPP-WALLACE,S.C.ALMO,J.M.FRERE,G.BOU,R.A.BONOMO JRNL TITL FOX-4 CEPHAMYCINASE: AN ANALYSIS OF STRUCTURE AND FUNCTION. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. 2015 JRNL REFN ESSN 1098-6596 JRNL PMID 26525784 JRNL DOI 10.1128/AAC.01887-15 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 62427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 3021 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.2900 - 3.9099 0.97 2748 148 0.1203 0.1344 REMARK 3 2 3.9099 - 3.1044 0.96 2663 142 0.1321 0.1777 REMARK 3 3 3.1044 - 2.7123 1.00 2759 138 0.1425 0.2026 REMARK 3 4 2.7123 - 2.4644 0.99 2744 144 0.1519 0.1602 REMARK 3 5 2.4644 - 2.2878 0.99 2728 150 0.1629 0.2153 REMARK 3 6 2.2878 - 2.1530 0.96 2604 153 0.2215 0.2926 REMARK 3 7 2.1530 - 2.0452 0.97 2683 125 0.1780 0.2134 REMARK 3 8 2.0452 - 1.9562 0.99 2746 118 0.1884 0.2161 REMARK 3 9 1.9562 - 1.8809 0.92 2535 136 0.2837 0.2937 REMARK 3 10 1.8809 - 1.8160 1.00 2724 136 0.1868 0.2555 REMARK 3 11 1.8160 - 1.7592 1.00 2769 123 0.1658 0.1939 REMARK 3 12 1.7592 - 1.7089 0.99 2680 155 0.1651 0.1979 REMARK 3 13 1.7089 - 1.6639 1.00 2715 147 0.1682 0.2085 REMARK 3 14 1.6639 - 1.6233 1.00 2757 129 0.1744 0.1922 REMARK 3 15 1.6233 - 1.5864 0.99 2710 145 0.1856 0.2341 REMARK 3 16 1.5864 - 1.5527 1.00 2761 113 0.1916 0.2486 REMARK 3 17 1.5527 - 1.5216 0.99 2678 145 0.2193 0.2261 REMARK 3 18 1.5216 - 1.4929 0.98 2695 141 0.2435 0.2804 REMARK 3 19 1.4929 - 1.4662 0.98 2667 141 0.3465 0.3910 REMARK 3 20 1.4662 - 1.4414 0.99 2748 125 0.2706 0.2920 REMARK 3 21 1.4414 - 1.4181 0.99 2711 133 0.2878 0.3651 REMARK 3 22 1.4181 - 1.4000 0.94 2581 134 0.2589 0.2773 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2847 REMARK 3 ANGLE : 1.329 3873 REMARK 3 CHIRALITY : 0.075 420 REMARK 3 PLANARITY : 0.007 509 REMARK 3 DIHEDRAL : 12.592 1023 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -13.8502 10.0110 -12.4814 REMARK 3 T TENSOR REMARK 3 T11: 0.0922 T22: 0.0963 REMARK 3 T33: 0.1502 T12: 0.0015 REMARK 3 T13: 0.0176 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.3976 L22: 0.8531 REMARK 3 L33: 1.0563 L12: 0.0280 REMARK 3 L13: 0.1086 L23: 0.2067 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: -0.0124 S13: 0.0109 REMARK 3 S21: -0.0146 S22: -0.0157 S23: -0.0004 REMARK 3 S31: 0.0489 S32: 0.0512 S33: -0.0034 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62654 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6, PHASER REMARK 200 STARTING MODEL: 5CGS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M ZINC ACETATE, 20% PEG 3350, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.30400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 759 O HOH A 873 1.95 REMARK 500 O HOH A 809 O HOH A 822 2.02 REMARK 500 O HOH A 767 O HOH A 823 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE2 HIS A 186 ZN ZN A 403 2444 1.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 126 20.83 -140.86 REMARK 500 THR A 177 -58.69 -126.38 REMARK 500 TYR A 222 34.63 -156.21 REMARK 500 ASN A 340 41.58 -97.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 931 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 932 DISTANCE = 6.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 1 ND1 REMARK 620 2 HIS A 186 NE2 117.4 REMARK 620 3 GLU A 361 OE2 101.3 18.7 REMARK 620 4 HOH A 767 O 119.2 80.7 97.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 5 OE1 REMARK 620 2 GLU A 5 OE2 54.8 REMARK 620 3 HIS A 39 ND1 131.3 84.2 REMARK 620 4 ASP A 274 OD1 133.4 79.0 22.0 REMARK 620 5 HOH A 781 O 106.3 106.1 109.9 90.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 84 OE1 REMARK 620 2 GLU A 84 OE2 54.4 REMARK 620 3 HIS A 185 ND1 56.0 50.8 REMARK 620 4 HOH A 555 O 52.4 52.2 4.5 REMARK 620 5 HOH A 809 O 53.5 54.0 5.0 2.0 REMARK 620 6 HOH A 822 O 56.8 55.8 5.1 4.9 3.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 124 OE1 REMARK 620 2 ASP A 126 OD1 99.8 REMARK 620 3 HIS A 147 NE2 54.7 45.2 REMARK 620 4 ACT A 407 O 157.4 83.0 125.7 REMARK 620 5 ACT A 407 OXT 103.9 106.6 117.4 54.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 160 NE2 REMARK 620 2 ACT A 408 OXT 109.1 REMARK 620 3 HOH A 604 O 104.5 104.6 REMARK 620 4 HOH A 844 O 126.8 114.6 92.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CGS RELATED DB: PDB REMARK 900 RELATED ID: 5CHJ RELATED DB: PDB REMARK 900 RELATED ID: 5CGX RELATED DB: PDB REMARK 900 RELATED ID: 5CHM RELATED DB: PDB DBREF 5CGW A 3 361 UNP Q9L387 Q9L387_ECOLX 24 382 SEQADV 5CGW GLY A 0 UNP Q9L387 EXPRESSION TAG SEQADV 5CGW HIS A 1 UNP Q9L387 EXPRESSION TAG SEQADV 5CGW MET A 2 UNP Q9L387 EXPRESSION TAG SEQADV 5CGW PHE A 150 UNP Q9L387 TYR 171 ENGINEERED MUTATION SEQRES 1 A 362 GLY HIS MET SER GLY GLU ALA PRO LEU THR ALA THR VAL SEQRES 2 A 362 ASP GLY ILE ILE GLN PRO MET LEU LYS ALA TYR ARG ILE SEQRES 3 A 362 PRO GLY MET ALA VAL ALA VAL LEU LYS ASP GLY LYS ALA SEQRES 4 A 362 HIS TYR PHE ASN TYR GLY VAL ALA ASN ARG GLU SER GLY SEQRES 5 A 362 GLN ARG VAL SER GLU GLN THR LEU PHE GLU ILE GLY SER SEQRES 6 A 362 VAL SER LYS THR LEU THR ALA THR LEU GLY ALA TYR ALA SEQRES 7 A 362 ALA VAL LYS GLY GLY PHE GLU LEU ASP ASP LYS VAL SER SEQRES 8 A 362 GLN HIS ALA PRO TRP LEU LYS GLY SER ALA PHE ASP GLY SEQRES 9 A 362 VAL THR MET ALA GLU LEU ALA THR TYR SER ALA GLY GLY SEQRES 10 A 362 LEU PRO LEU GLN PHE PRO ASP GLU VAL ASP SER ASN ASP SEQRES 11 A 362 LYS MET GLN THR TYR TYR ARG SER TRP SER PRO VAL TYR SEQRES 12 A 362 PRO ALA GLY THR HIS ARG GLN PHE SER ASN PRO SER ILE SEQRES 13 A 362 GLY LEU PHE GLY HIS LEU ALA ALA ASN SER LEU GLY GLN SEQRES 14 A 362 PRO PHE GLU GLN LEU MET SER GLN THR LEU LEU PRO LYS SEQRES 15 A 362 LEU GLY LEU HIS HIS THR TYR ILE GLN VAL PRO GLU SER SEQRES 16 A 362 ALA MET ALA ASN TYR ALA TYR GLY TYR SER LYS GLU ASP SEQRES 17 A 362 LYS PRO ILE ARG ALA THR PRO GLY VAL LEU ALA ALA GLU SEQRES 18 A 362 ALA TYR GLY ILE LYS THR GLY SER ALA ASP LEU LEU LYS SEQRES 19 A 362 PHE VAL GLU ALA ASN MET GLY TYR GLN GLY ASP ALA ALA SEQRES 20 A 362 LEU LYS SER ALA ILE ALA LEU THR HIS THR GLY PHE HIS SEQRES 21 A 362 SER VAL GLY GLU MET THR GLN GLY LEU GLY TRP GLU SER SEQRES 22 A 362 TYR ASP TYR PRO VAL THR GLU GLN VAL LEU LEU ALA GLY SEQRES 23 A 362 ASN SER PRO ALA VAL SER PHE GLN ALA ASN PRO VAL THR SEQRES 24 A 362 ARG PHE ALA VAL PRO LYS ALA MET GLY GLU GLN ARG LEU SEQRES 25 A 362 TYR ASN LYS THR GLY SER THR GLY GLY PHE GLY ALA TYR SEQRES 26 A 362 VAL ALA PHE VAL PRO ALA ARG GLY ILE ALA ILE VAL MET SEQRES 27 A 362 LEU ALA ASN ARG ASN TYR PRO ILE GLU ALA ARG VAL LYS SEQRES 28 A 362 ALA ALA HIS ALA ILE LEU SER GLN LEU ALA GLU HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET ACT A 406 7 HET ACT A 407 7 HET ACT A 408 7 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 2 ZN 5(ZN 2+) FORMUL 7 ACT 3(C2 H3 O2 1-) FORMUL 10 HOH *432(H2 O) HELIX 1 AA1 GLY A 4 TYR A 23 1 20 HELIX 2 AA2 VAL A 65 LYS A 80 1 16 HELIX 3 AA3 LYS A 88 LYS A 97 5 10 HELIX 4 AA4 SER A 99 VAL A 104 5 6 HELIX 5 AA5 THR A 105 THR A 111 1 7 HELIX 6 AA6 SER A 127 TRP A 138 1 12 HELIX 7 AA7 SER A 151 SER A 165 1 15 HELIX 8 AA8 PRO A 169 THR A 177 1 9 HELIX 9 AA9 THR A 177 GLY A 183 1 7 HELIX 10 AB1 PRO A 192 TYR A 199 5 8 HELIX 11 AB2 LEU A 217 GLY A 223 1 7 HELIX 12 AB3 GLY A 227 GLY A 240 1 14 HELIX 13 AB4 ASP A 244 HIS A 255 1 12 HELIX 14 AB5 THR A 278 ASN A 286 1 9 HELIX 15 AB6 SER A 287 PHE A 292 1 6 HELIX 16 AB7 PRO A 344 ALA A 360 1 17 SHEET 1 AA110 GLN A 52 ARG A 53 0 SHEET 2 AA110 LYS A 37 ASN A 47 -1 N ALA A 46 O GLN A 52 SHEET 3 AA110 GLY A 27 LYS A 34 -1 N VAL A 30 O PHE A 41 SHEET 4 AA110 ILE A 333 ALA A 339 -1 O LEU A 338 N ALA A 29 SHEET 5 AA110 PHE A 321 VAL A 328 -1 N ALA A 326 O ILE A 335 SHEET 6 AA110 ARG A 310 THR A 318 -1 N GLY A 316 O ALA A 323 SHEET 7 AA110 GLU A 271 ASP A 274 -1 N GLU A 271 O ASN A 313 SHEET 8 AA110 MET A 264 GLN A 266 -1 N THR A 265 O SER A 272 SHEET 9 AA110 THR A 256 VAL A 261 -1 N VAL A 261 O MET A 264 SHEET 10 AA110 THR A 298 ALA A 305 -1 O LYS A 304 N GLY A 257 SHEET 1 AA2 2 PHE A 60 GLU A 61 0 SHEET 2 AA2 2 LYS A 225 THR A 226 -1 O THR A 226 N PHE A 60 SHEET 1 AA3 2 HIS A 147 ARG A 148 0 SHEET 2 AA3 2 ASN A 295 PRO A 296 -1 O ASN A 295 N ARG A 148 SHEET 1 AA4 2 GLY A 202 TYR A 203 0 SHEET 2 AA4 2 PRO A 209 ILE A 210 -1 O ILE A 210 N GLY A 202 LINK ND1 HIS A 1 ZN ZN A 403 1555 1555 2.10 LINK OE1 GLU A 5 ZN ZN A 402 1555 1555 2.03 LINK OE2 GLU A 5 ZN ZN A 402 1555 1555 2.54 LINK ND1 HIS A 39 ZN ZN A 402 1555 1555 1.98 LINK OE1 GLU A 84 ZN ZN A 405 1555 2455 1.96 LINK OE2 GLU A 84 ZN ZN A 405 1555 2455 2.55 LINK OE1 GLU A 124 ZN ZN A 404 1555 1555 2.24 LINK OD1 ASP A 126 ZN ZN A 404 1555 1555 2.00 LINK NE2 HIS A 147 ZN ZN A 404 1555 2555 2.04 LINK NE2 HIS A 160 ZN ZN A 401 1555 1555 2.08 LINK ND1 HIS A 185 ZN ZN A 405 1555 1555 2.14 LINK NE2 HIS A 186 ZN ZN A 403 1555 2444 2.11 LINK OD1 ASP A 274 ZN ZN A 402 1555 2454 1.98 LINK OE2 GLU A 361 ZN ZN A 403 1555 1555 1.92 LINK ZN ZN A 401 OXT ACT A 408 1555 1555 2.25 LINK ZN ZN A 401 O HOH A 604 1555 1555 2.05 LINK ZN ZN A 401 O HOH A 844 1555 1555 2.04 LINK ZN ZN A 402 O HOH A 781 1555 1555 1.81 LINK ZN ZN A 403 O HOH A 767 1555 1555 2.10 LINK ZN ZN A 404 O ACT A 407 1555 1555 2.58 LINK ZN ZN A 404 OXT ACT A 407 1555 1555 1.97 LINK ZN ZN A 405 O HOH A 555 1555 1555 2.41 LINK ZN ZN A 405 O HOH A 809 1555 1555 1.95 LINK ZN ZN A 405 O HOH A 822 1555 1555 2.41 CISPEP 1 TYR A 275 PRO A 276 0 -5.20 CISPEP 2 TYR A 275 PRO A 276 0 -2.86 SITE 1 AC1 4 HIS A 160 ACT A 408 HOH A 604 HOH A 844 SITE 1 AC2 3 GLU A 5 HIS A 39 HOH A 781 SITE 1 AC3 4 HIS A 1 GLU A 361 HOH A 767 HOH A 823 SITE 1 AC4 3 GLU A 124 ASP A 126 ACT A 407 SITE 1 AC5 4 HIS A 185 HOH A 555 HOH A 809 HOH A 822 SITE 1 AC6 5 SER A 64 GLY A 316 SER A 317 HOH A 659 SITE 2 AC6 5 HOH A 715 SITE 1 AC7 5 GLU A 124 ASP A 126 LYS A 130 ZN A 404 SITE 2 AC7 5 HOH A 510 SITE 1 AC8 6 HIS A 92 TRP A 95 HIS A 160 LEU A 161 SITE 2 AC8 6 ASN A 164 ZN A 401 CRYST1 53.215 56.608 54.179 90.00 96.24 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018792 0.000000 0.002054 0.00000 SCALE2 0.000000 0.017665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018567 0.00000