HEADER HYDROLASE 09-JUL-15 5CGX TITLE CRYSTAL STRUCTURE OF FOX-4 CEPHAMYCINASE MUTANT Y150F COMPLEXED WITH TITLE 2 CEFOXITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-382; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: FOX-4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHMTEV KEYWDS BETA-LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,S.LEFURGY,S.C.ALMO REVDAT 2 27-SEP-23 5CGX 1 JRNL REMARK LINK REVDAT 1 03-FEB-16 5CGX 0 JRNL AUTH S.T.LEFURGY,V.N.MALASHKEVICH,J.T.AGUILAN,E.NIEVES, JRNL AUTH 2 E.C.MUNDORFF,B.BIJU,M.A.NOEL,R.TORO,D.BAIWIR, JRNL AUTH 3 K.M.PAPP-WALLACE,S.C.ALMO,J.M.FRERE,G.BOU,R.A.BONOMO JRNL TITL FOX-4 CEPHAMYCINASE: AN ANALYSIS OF STRUCTURE AND FUNCTION. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. 2015 JRNL REFN ESSN 1098-6596 JRNL PMID 26525784 JRNL DOI 10.1128/AAC.01887-15 REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 96830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6459 - 3.7513 0.94 3124 160 0.1433 0.1539 REMARK 3 2 3.7513 - 2.9809 0.99 3219 165 0.1402 0.1678 REMARK 3 3 2.9809 - 2.6050 0.99 3196 179 0.1468 0.1735 REMARK 3 4 2.6050 - 2.3673 0.99 3189 162 0.1431 0.1685 REMARK 3 5 2.3673 - 2.1979 0.98 3159 164 0.1567 0.1863 REMARK 3 6 2.1979 - 2.0684 0.98 3134 191 0.1537 0.1915 REMARK 3 7 2.0684 - 1.9649 0.98 3191 143 0.1626 0.1903 REMARK 3 8 1.9649 - 1.8795 0.98 3110 177 0.1808 0.2368 REMARK 3 9 1.8795 - 1.8072 0.97 3121 186 0.1809 0.2072 REMARK 3 10 1.8072 - 1.7449 0.97 3121 156 0.1789 0.2211 REMARK 3 11 1.7449 - 1.6903 0.97 3126 166 0.1849 0.2016 REMARK 3 12 1.6903 - 1.6420 0.97 3108 154 0.1915 0.2028 REMARK 3 13 1.6420 - 1.5988 0.96 3079 168 0.1957 0.2049 REMARK 3 14 1.5988 - 1.5598 0.96 3094 158 0.1957 0.2335 REMARK 3 15 1.5598 - 1.5244 0.96 3114 129 0.2125 0.2408 REMARK 3 16 1.5244 - 1.4920 0.96 3061 151 0.2209 0.2374 REMARK 3 17 1.4920 - 1.4621 0.95 3018 157 0.2244 0.2430 REMARK 3 18 1.4621 - 1.4345 0.95 3069 174 0.2335 0.2673 REMARK 3 19 1.4345 - 1.4089 0.95 3058 163 0.2471 0.2563 REMARK 3 20 1.4089 - 1.3851 0.95 2998 155 0.2545 0.2798 REMARK 3 21 1.3851 - 1.3627 0.94 3025 159 0.2570 0.2471 REMARK 3 22 1.3627 - 1.3418 0.94 2953 185 0.2730 0.2993 REMARK 3 23 1.3418 - 1.3220 0.94 3004 156 0.2710 0.3337 REMARK 3 24 1.3220 - 1.3034 0.93 3016 157 0.2842 0.2766 REMARK 3 25 1.3034 - 1.2858 0.93 2930 168 0.2982 0.3162 REMARK 3 26 1.2858 - 1.2691 0.92 2969 164 0.2982 0.3532 REMARK 3 27 1.2691 - 1.2532 0.93 2991 137 0.3116 0.3266 REMARK 3 28 1.2532 - 1.2381 0.92 2921 156 0.3205 0.3479 REMARK 3 29 1.2381 - 1.2238 0.92 2950 154 0.3360 0.3282 REMARK 3 30 1.2238 - 1.2100 0.92 2945 143 0.3403 0.3693 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.024 2904 REMARK 3 ANGLE : 2.378 3903 REMARK 3 CHIRALITY : 0.105 422 REMARK 3 PLANARITY : 0.012 514 REMARK 3 DIHEDRAL : 16.494 1041 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 55.1091 -0.5705 70.8679 REMARK 3 T TENSOR REMARK 3 T11: 0.0848 T22: 0.0757 REMARK 3 T33: 0.0849 T12: -0.0072 REMARK 3 T13: 0.0411 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.9206 L22: 0.8025 REMARK 3 L33: 0.5344 L12: 0.3345 REMARK 3 L13: 0.3352 L23: 0.1498 REMARK 3 S TENSOR REMARK 3 S11: -0.0506 S12: 0.0649 S13: 0.0539 REMARK 3 S21: -0.0460 S22: 0.0161 S23: 0.0058 REMARK 3 S31: -0.0367 S32: -0.0007 S33: 0.0248 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CGX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211610. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96864 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.210 REMARK 200 RESOLUTION RANGE LOW (A) : 19.676 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.73900 REMARK 200 R SYM FOR SHELL (I) : 0.73900 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6, PHASER REMARK 200 STARTING MODEL: PDB 5CGS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M ZINC ACETATE, 20% PEG 3350, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.29400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 255 ZN ZN A 408 1.27 REMARK 500 HH22 ARG A 331 O HOH A 509 1.56 REMARK 500 OE1 GLU A 308 O HOH A 501 1.86 REMARK 500 O HOH A 505 O HOH A 736 1.94 REMARK 500 OE1 GLU A 206 O HOH A 502 2.09 REMARK 500 OE2 GLU A 308 O HOH A 501 2.10 REMARK 500 O HOH A 505 O HOH A 769 2.11 REMARK 500 CD GLU A 308 O HOH A 501 2.12 REMARK 500 O HOH A 843 O HOH A 859 2.13 REMARK 500 O HOH A 814 O HOH A 845 2.14 REMARK 500 O HOH A 506 O HOH A 748 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE2 HIS A 186 ZN ZN A 403 2858 1.14 REMARK 500 O HOH A 506 O HOH A 707 2748 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 9 CA THR A 9 C 0.179 REMARK 500 ASN A 128 N ASN A 128 CA 0.127 REMARK 500 ASN A 128 CA ASN A 128 C 0.164 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 93 91.12 -160.10 REMARK 500 THR A 177 -59.57 -124.20 REMARK 500 ASP A 207 32.07 77.62 REMARK 500 TYR A 222 30.52 -158.52 REMARK 500 PRO A 276 158.37 -49.94 REMARK 500 ASN A 340 43.49 -104.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 873 DISTANCE = 6.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 1 ND1 REMARK 620 2 HIS A 186 NE2 117.7 REMARK 620 3 GLU A 361 OE1 110.6 46.7 REMARK 620 4 GLU A 361 OE2 101.7 16.4 53.5 REMARK 620 5 HOH A 750 O 102.9 99.2 140.5 100.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 5 OE1 REMARK 620 2 GLU A 5 OE2 57.9 REMARK 620 3 HIS A 39 ND1 133.3 82.3 REMARK 620 4 ASP A 274 OD1 136.0 78.1 23.4 REMARK 620 5 HOH A 764 O 99.3 95.6 108.8 86.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 84 OE1 REMARK 620 2 GLU A 84 OE2 62.5 REMARK 620 3 HIS A 185 ND1 61.5 14.8 REMARK 620 4 HOH A 773 O 60.4 10.1 4.9 REMARK 620 5 HOH A 775 O 59.6 10.6 4.8 0.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 124 OE1 REMARK 620 2 ASP A 126 OD2 108.4 REMARK 620 3 HIS A 147 NE2 65.1 44.9 REMARK 620 4 HOH A 786 O 107.6 113.7 138.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 160 NE2 REMARK 620 2 HOH A 563 O 109.4 REMARK 620 3 HOH A 778 O 114.0 112.9 REMARK 620 4 HOH A 781 O 103.8 108.7 107.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 220 OE2 REMARK 620 2 HOH A 751 O 116.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 408 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 255 ND1 REMARK 620 2 HOH A 501 O 97.6 REMARK 620 3 HOH A 761 O 126.3 114.3 REMARK 620 4 HOH A 787 O 98.4 110.1 108.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1S7 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CGS RELATED DB: PDB REMARK 900 RELATED ID: 5CGW RELATED DB: PDB REMARK 900 RELATED ID: 5CHJ RELATED DB: PDB REMARK 900 RELATED ID: 5CHM RELATED DB: PDB DBREF 5CGX A 3 361 UNP Q9L387 Q9L387_ECOLX 24 382 SEQADV 5CGX GLY A 0 UNP Q9L387 EXPRESSION TAG SEQADV 5CGX HIS A 1 UNP Q9L387 EXPRESSION TAG SEQADV 5CGX MET A 2 UNP Q9L387 EXPRESSION TAG SEQADV 5CGX PHE A 150 UNP Q9L387 TYR 171 ENGINEERED MUTATION SEQRES 1 A 362 GLY HIS MET SER GLY GLU ALA PRO LEU THR ALA THR VAL SEQRES 2 A 362 ASP GLY ILE ILE GLN PRO MET LEU LYS ALA TYR ARG ILE SEQRES 3 A 362 PRO GLY MET ALA VAL ALA VAL LEU LYS ASP GLY LYS ALA SEQRES 4 A 362 HIS TYR PHE ASN TYR GLY VAL ALA ASN ARG GLU SER GLY SEQRES 5 A 362 GLN ARG VAL SER GLU GLN THR LEU PHE GLU ILE GLY SER SEQRES 6 A 362 VAL SER LYS THR LEU THR ALA THR LEU GLY ALA TYR ALA SEQRES 7 A 362 ALA VAL LYS GLY GLY PHE GLU LEU ASP ASP LYS VAL SER SEQRES 8 A 362 GLN HIS ALA PRO TRP LEU LYS GLY SER ALA PHE ASP GLY SEQRES 9 A 362 VAL THR MET ALA GLU LEU ALA THR TYR SER ALA GLY GLY SEQRES 10 A 362 LEU PRO LEU GLN PHE PRO ASP GLU VAL ASP SER ASN ASP SEQRES 11 A 362 LYS MET GLN THR TYR TYR ARG SER TRP SER PRO VAL TYR SEQRES 12 A 362 PRO ALA GLY THR HIS ARG GLN PHE SER ASN PRO SER ILE SEQRES 13 A 362 GLY LEU PHE GLY HIS LEU ALA ALA ASN SER LEU GLY GLN SEQRES 14 A 362 PRO PHE GLU GLN LEU MET SER GLN THR LEU LEU PRO LYS SEQRES 15 A 362 LEU GLY LEU HIS HIS THR TYR ILE GLN VAL PRO GLU SER SEQRES 16 A 362 ALA MET ALA ASN TYR ALA TYR GLY TYR SER LYS GLU ASP SEQRES 17 A 362 LYS PRO ILE ARG ALA THR PRO GLY VAL LEU ALA ALA GLU SEQRES 18 A 362 ALA TYR GLY ILE LYS THR GLY SER ALA ASP LEU LEU LYS SEQRES 19 A 362 PHE VAL GLU ALA ASN MET GLY TYR GLN GLY ASP ALA ALA SEQRES 20 A 362 LEU LYS SER ALA ILE ALA LEU THR HIS THR GLY PHE HIS SEQRES 21 A 362 SER VAL GLY GLU MET THR GLN GLY LEU GLY TRP GLU SER SEQRES 22 A 362 TYR ASP TYR PRO VAL THR GLU GLN VAL LEU LEU ALA GLY SEQRES 23 A 362 ASN SER PRO ALA VAL SER PHE GLN ALA ASN PRO VAL THR SEQRES 24 A 362 ARG PHE ALA VAL PRO LYS ALA MET GLY GLU GLN ARG LEU SEQRES 25 A 362 TYR ASN LYS THR GLY SER THR GLY GLY PHE GLY ALA TYR SEQRES 26 A 362 VAL ALA PHE VAL PRO ALA ARG GLY ILE ALA ILE VAL MET SEQRES 27 A 362 LEU ALA ASN ARG ASN TYR PRO ILE GLU ALA ARG VAL LYS SEQRES 28 A 362 ALA ALA HIS ALA ILE LEU SER GLN LEU ALA GLU HET 1S7 A 401 38 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET ZN A 406 1 HET NA A 407 1 HET ZN A 408 1 HETNAM 1S7 (2R)-2-{(1S)-1-METHOXY-2-OXO-1-[(THIOPHEN-2-YLACETYL) HETNAM 2 1S7 AMINO]ETHYL}-5-METHYLIDENE-5,6-DIHYDRO-2H-1,3- HETNAM 3 1S7 THIAZINE-4-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETSYN 1S7 CEFOXITIN, BOUND FORM FORMUL 2 1S7 C15 H16 N2 O5 S2 FORMUL 3 ZN 6(ZN 2+) FORMUL 8 NA NA 1+ FORMUL 10 HOH *373(H2 O) HELIX 1 AA1 GLY A 4 ARG A 24 1 21 HELIX 2 AA2 VAL A 65 LYS A 80 1 16 HELIX 3 AA3 LYS A 88 LYS A 97 5 10 HELIX 4 AA4 SER A 99 VAL A 104 5 6 HELIX 5 AA5 THR A 105 THR A 111 1 7 HELIX 6 AA6 SER A 127 TRP A 138 1 12 HELIX 7 AA7 SER A 151 LEU A 166 1 16 HELIX 8 AA8 PRO A 169 THR A 177 1 9 HELIX 9 AA9 THR A 177 GLY A 183 1 7 HELIX 10 AB1 PRO A 192 TYR A 199 5 8 HELIX 11 AB2 LEU A 217 GLY A 223 1 7 HELIX 12 AB3 GLY A 227 GLY A 240 1 14 HELIX 13 AB4 ASP A 244 HIS A 255 1 12 HELIX 14 AB5 THR A 278 ASN A 286 1 9 HELIX 15 AB6 SER A 287 PHE A 292 1 6 HELIX 16 AB7 PRO A 344 ALA A 360 1 17 SHEET 1 AA1 9 LYS A 37 GLY A 44 0 SHEET 2 AA1 9 GLY A 27 LYS A 34 -1 N VAL A 30 O PHE A 41 SHEET 3 AA1 9 ILE A 333 ALA A 339 -1 O LEU A 338 N ALA A 29 SHEET 4 AA1 9 GLY A 322 VAL A 328 -1 N ALA A 326 O ILE A 335 SHEET 5 AA1 9 ARG A 310 SER A 317 -1 N GLY A 316 O ALA A 323 SHEET 6 AA1 9 GLU A 271 ASP A 274 -1 N GLU A 271 O ASN A 313 SHEET 7 AA1 9 MET A 264 GLN A 266 -1 N THR A 265 O SER A 272 SHEET 8 AA1 9 THR A 256 VAL A 261 -1 N PHE A 258 O GLN A 266 SHEET 9 AA1 9 THR A 298 ALA A 305 -1 O LYS A 304 N GLY A 257 SHEET 1 AA2 2 PHE A 60 GLU A 61 0 SHEET 2 AA2 2 LYS A 225 THR A 226 -1 O THR A 226 N PHE A 60 SHEET 1 AA3 2 HIS A 147 ARG A 148 0 SHEET 2 AA3 2 ASN A 295 PRO A 296 -1 O ASN A 295 N ARG A 148 SHEET 1 AA4 2 GLY A 202 TYR A 203 0 SHEET 2 AA4 2 PRO A 209 ILE A 210 -1 O ILE A 210 N GLY A 202 LINK OG SER A 64 C14 1S7 A 401 1555 1555 1.40 LINK ND1 HIS A 1 ZN ZN A 403 1555 1555 2.00 LINK OE1 GLU A 5 ZN ZN A 402 1555 1555 1.99 LINK OE2 GLU A 5 ZN ZN A 402 1555 1555 2.39 LINK ND1 HIS A 39 ZN ZN A 402 1555 1555 1.97 LINK OE1 GLU A 84 ZN ZN A 406 1555 2748 2.07 LINK OE2 GLU A 84 ZN ZN A 406 1555 2748 2.02 LINK OE1 GLU A 124 ZN ZN A 404 1555 1555 2.02 LINK OD2 ASP A 126 ZN ZN A 404 1555 1555 1.92 LINK NE2 HIS A 147 ZN ZN A 404 1555 2747 2.04 LINK NE2 HIS A 160 ZN ZN A 405 1555 1555 2.16 LINK ND1 HIS A 185 ZN ZN A 406 1555 1555 1.96 LINK NE2 HIS A 186 ZN ZN A 403 1555 2858 1.99 LINK OE2 GLU A 220 NA NA A 407 1555 1555 2.33 LINK ND1 HIS A 255 ZN ZN A 408 1555 1555 2.07 LINK OD1 ASP A 274 ZN ZN A 402 1555 2848 1.92 LINK OE1 GLU A 361 ZN ZN A 403 1555 1555 2.67 LINK OE2 GLU A 361 ZN ZN A 403 1555 1555 1.95 LINK ZN ZN A 402 O HOH A 764 1555 1555 2.21 LINK ZN ZN A 403 O HOH A 750 1555 1555 2.14 LINK ZN ZN A 404 O HOH A 786 1555 1555 2.17 LINK ZN ZN A 405 O HOH A 563 1555 1555 2.10 LINK ZN ZN A 405 O HOH A 778 1555 1555 2.17 LINK ZN ZN A 405 O HOH A 781 1555 1555 2.11 LINK ZN ZN A 406 O HOH A 773 1555 1555 2.09 LINK ZN ZN A 406 O HOH A 775 1555 1555 2.19 LINK NA NA A 407 O HOH A 751 1555 1555 2.42 LINK ZN ZN A 408 O HOH A 501 1555 1555 2.30 LINK ZN ZN A 408 O HOH A 761 1555 1555 2.41 LINK ZN ZN A 408 O HOH A 787 1555 1555 2.40 CISPEP 1 TYR A 275 PRO A 276 0 -7.86 SITE 1 AC1 12 SER A 64 LYS A 67 LEU A 119 GLN A 120 SITE 2 AC1 12 PHE A 150 ASN A 152 ALA A 221 TYR A 222 SITE 3 AC1 12 PHE A 292 GLY A 316 SER A 317 HOH A 708 SITE 1 AC2 3 GLU A 5 HIS A 39 HOH A 764 SITE 1 AC3 3 HIS A 1 GLU A 361 HOH A 750 SITE 1 AC4 3 GLU A 124 ASP A 126 HOH A 786 SITE 1 AC5 4 HIS A 160 HOH A 563 HOH A 778 HOH A 781 SITE 1 AC6 3 HIS A 185 HOH A 773 HOH A 775 SITE 1 AC7 3 HIS A 160 GLU A 220 HOH A 751 SITE 1 AC8 5 HIS A 255 GLU A 308 HOH A 501 HOH A 761 SITE 2 AC8 5 HOH A 787 CRYST1 54.524 56.588 55.485 90.00 99.23 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018341 0.000000 0.002980 0.00000 SCALE2 0.000000 0.017672 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018259 0.00000