HEADER HYDROLASE 10-JUL-15 5CHT TITLE CRYSTAL STRUCTURE OF USP18 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBL CARBOXYL-TERMINAL HYDROLASE 18; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 46-368; COMPND 5 SYNONYM: 43 KDA ISG15-SPECIFIC PROTEASE,ISG15-SPECIFIC-PROCESSING COMPND 6 PROTEASE,UBL THIOESTERASE 18; COMPND 7 EC: 3.4.19.-; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: USP18 WAS TRUNCATED AT THE N-TERMINUS. RESIDUES 1-45 COMPND 10 ARE MISSING. RESIDUES 43, 44,45 GIVEN IN THE PDB ARE ORIGINATING FROM COMPND 11 THE PURIFICATION TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: USP18, UBP43; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: MULTIBAC KEYWDS UBIQUITIN-SPECIFIC PROTEASE, ISG15, INTERFERON, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.FRITZ,A.BASTERS REVDAT 4 10-JAN-24 5CHT 1 LINK REVDAT 3 15-MAR-17 5CHT 1 JRNL REVDAT 2 15-FEB-17 5CHT 1 JRNL REVDAT 1 29-JUN-16 5CHT 0 JRNL AUTH A.BASTERS,P.P.GEURINK,A.ROCKER,K.F.WITTING,R.TADAYON,S.HESS, JRNL AUTH 2 M.S.SEMRAU,P.STORICI,H.OVAA,K.P.KNOBELOCH,G.FRITZ JRNL TITL STRUCTURAL BASIS OF THE SPECIFICITY OF USP18 TOWARD ISG15. JRNL REF NAT. STRUCT. MOL. BIOL. V. 24 270 2017 JRNL REFN ESSN 1545-9985 JRNL PMID 28165509 JRNL DOI 10.1038/NSMB.3371 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.7729 - 5.3453 0.99 2630 153 0.1855 0.2569 REMARK 3 2 5.3453 - 4.2476 1.00 2527 140 0.1737 0.2219 REMARK 3 3 4.2476 - 3.7121 1.00 2513 127 0.2122 0.2708 REMARK 3 4 3.7121 - 3.3733 1.00 2487 123 0.2331 0.2942 REMARK 3 5 3.3733 - 3.1319 1.00 2468 144 0.2951 0.3784 REMARK 3 6 3.1319 - 2.9475 1.00 2470 119 0.3459 0.3772 REMARK 3 7 2.9475 - 2.8000 1.00 2454 132 0.3898 0.4084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5009 REMARK 3 ANGLE : 1.059 6774 REMARK 3 CHIRALITY : 0.055 774 REMARK 3 PLANARITY : 0.007 843 REMARK 3 DIHEDRAL : 15.285 1824 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 43:115) REMARK 3 ORIGIN FOR THE GROUP (A): 58.3121 10.2095 86.7094 REMARK 3 T TENSOR REMARK 3 T11: 0.3317 T22: 0.2774 REMARK 3 T33: 0.2881 T12: 0.0560 REMARK 3 T13: -0.0313 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 1.9079 L22: 0.3454 REMARK 3 L33: 0.5115 L12: 0.2136 REMARK 3 L13: -0.0558 L23: 0.4996 REMARK 3 S TENSOR REMARK 3 S11: -0.0566 S12: 0.2934 S13: 0.0614 REMARK 3 S21: -0.1191 S22: -0.1097 S23: 0.1491 REMARK 3 S31: -0.1350 S32: 0.2120 S33: -0.1355 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 116:163) REMARK 3 ORIGIN FOR THE GROUP (A): 55.0907 8.6009 74.4454 REMARK 3 T TENSOR REMARK 3 T11: 0.3236 T22: 0.2079 REMARK 3 T33: 0.2402 T12: 0.1050 REMARK 3 T13: -0.0685 T23: -0.0751 REMARK 3 L TENSOR REMARK 3 L11: 0.6001 L22: 2.0892 REMARK 3 L33: 0.5241 L12: -0.3253 REMARK 3 L13: -0.5125 L23: 0.5084 REMARK 3 S TENSOR REMARK 3 S11: 0.1445 S12: 0.3746 S13: 0.0700 REMARK 3 S21: -0.7433 S22: 0.1811 S23: 0.2161 REMARK 3 S31: -0.2838 S32: -0.1969 S33: 0.4100 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 164:213) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1747 -9.0610 68.7119 REMARK 3 T TENSOR REMARK 3 T11: 0.5777 T22: 0.6798 REMARK 3 T33: 0.6082 T12: -0.0382 REMARK 3 T13: -0.0782 T23: -0.1231 REMARK 3 L TENSOR REMARK 3 L11: -0.1033 L22: 0.1830 REMARK 3 L33: 0.1328 L12: -0.0631 REMARK 3 L13: 0.0672 L23: -0.0917 REMARK 3 S TENSOR REMARK 3 S11: -0.1809 S12: 0.7636 S13: 0.3179 REMARK 3 S21: -0.0488 S22: 0.1932 S23: 0.2600 REMARK 3 S31: 0.3456 S32: 0.1815 S33: -0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 214:240) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2391 -13.3847 54.6132 REMARK 3 T TENSOR REMARK 3 T11: 0.8785 T22: 0.9336 REMARK 3 T33: 0.7446 T12: -0.0626 REMARK 3 T13: -0.1993 T23: -0.3272 REMARK 3 L TENSOR REMARK 3 L11: 0.1074 L22: 0.0740 REMARK 3 L33: 0.0064 L12: -0.0950 REMARK 3 L13: -0.0376 L23: 0.0571 REMARK 3 S TENSOR REMARK 3 S11: -0.1239 S12: 0.4335 S13: 1.1344 REMARK 3 S21: -0.4276 S22: -0.0713 S23: -0.2185 REMARK 3 S31: 0.2564 S32: 0.0386 S33: -0.0063 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 241:367) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2613 1.3339 85.3950 REMARK 3 T TENSOR REMARK 3 T11: 0.3217 T22: 0.3570 REMARK 3 T33: 0.3783 T12: 0.0383 REMARK 3 T13: -0.0863 T23: -0.1286 REMARK 3 L TENSOR REMARK 3 L11: 0.4773 L22: 0.5889 REMARK 3 L33: 0.9200 L12: 0.5392 REMARK 3 L13: -0.5676 L23: -0.1070 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: -0.0309 S13: -0.0890 REMARK 3 S21: 0.1546 S22: 0.0457 S23: -0.0680 REMARK 3 S31: 0.1584 S32: -0.1626 S33: 0.2659 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 48:106) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0195 26.6131 98.6550 REMARK 3 T TENSOR REMARK 3 T11: 0.2468 T22: 0.3456 REMARK 3 T33: 0.3343 T12: -0.0282 REMARK 3 T13: 0.0257 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 1.0715 L22: 0.3984 REMARK 3 L33: 1.5989 L12: 0.3267 REMARK 3 L13: 0.0530 L23: 0.4420 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: 0.1476 S13: -0.3887 REMARK 3 S21: -0.0357 S22: -0.0153 S23: 0.0883 REMARK 3 S31: 0.3506 S32: -0.0156 S33: 0.1173 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 107:171) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6035 33.8247 99.3934 REMARK 3 T TENSOR REMARK 3 T11: 0.3211 T22: 0.4185 REMARK 3 T33: 0.4658 T12: 0.0122 REMARK 3 T13: 0.0533 T23: -0.0665 REMARK 3 L TENSOR REMARK 3 L11: 0.6563 L22: 0.2610 REMARK 3 L33: 0.4902 L12: -0.0995 REMARK 3 L13: -0.0467 L23: -0.4860 REMARK 3 S TENSOR REMARK 3 S11: -0.0995 S12: 0.3954 S13: 0.1745 REMARK 3 S21: -0.1455 S22: -0.1540 S23: 0.3543 REMARK 3 S31: -0.0757 S32: -0.4404 S33: -0.0091 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 172:213) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4641 46.4624 112.8274 REMARK 3 T TENSOR REMARK 3 T11: 0.3194 T22: 0.6515 REMARK 3 T33: 0.3290 T12: -0.0001 REMARK 3 T13: 0.0167 T23: -0.0669 REMARK 3 L TENSOR REMARK 3 L11: -0.0081 L22: 0.1481 REMARK 3 L33: 0.2761 L12: 0.0277 REMARK 3 L13: -0.1330 L23: -0.1519 REMARK 3 S TENSOR REMARK 3 S11: -0.2555 S12: -0.1512 S13: 0.0599 REMARK 3 S21: -0.1652 S22: 0.3567 S23: -0.0916 REMARK 3 S31: -0.0274 S32: -0.1179 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 214:239) REMARK 3 ORIGIN FOR THE GROUP (A): 46.6322 60.1568 110.6123 REMARK 3 T TENSOR REMARK 3 T11: 0.6173 T22: 0.6256 REMARK 3 T33: 0.5380 T12: 0.0981 REMARK 3 T13: 0.0188 T23: -0.1493 REMARK 3 L TENSOR REMARK 3 L11: 0.0930 L22: 0.0334 REMARK 3 L33: 0.1159 L12: -0.0132 REMARK 3 L13: -0.0288 L23: 0.0119 REMARK 3 S TENSOR REMARK 3 S11: 0.1322 S12: -0.0572 S13: -0.1742 REMARK 3 S21: -0.5073 S22: -0.5062 S23: -0.2296 REMARK 3 S31: -0.1742 S32: 0.3653 S33: -0.0021 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 240:366) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0354 27.1992 106.9851 REMARK 3 T TENSOR REMARK 3 T11: 0.2841 T22: 0.2310 REMARK 3 T33: 0.2085 T12: 0.0026 REMARK 3 T13: 0.0034 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 1.2422 L22: 1.6456 REMARK 3 L33: 0.3561 L12: 0.0708 REMARK 3 L13: 0.6087 L23: -0.0486 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: 0.1257 S13: 0.0065 REMARK 3 S21: 0.0617 S22: 0.0080 S23: 0.0705 REMARK 3 S31: 0.0377 S32: 0.0549 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CHT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18487 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.860 REMARK 200 R MERGE (I) : 0.30100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.96 REMARK 200 R MERGE FOR SHELL (I) : 2.77100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1NB8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.09 M SUCCINATE, PH 7.0, 13.5% (W/V) REMARK 280 PEG 3350, 10 MM KBR, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.97950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.70300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.87350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.70300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.97950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.87350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 259 REMARK 465 SER A 260 REMARK 465 ARG A 261 REMARK 465 LEU A 281 REMARK 465 PRO A 282 REMARK 465 THR A 283 REMARK 465 GLU A 284 REMARK 465 GLU A 285 REMARK 465 ASP A 286 REMARK 465 LEU A 287 REMARK 465 GLY A 288 REMARK 465 ASP A 289 REMARK 465 THR A 290 REMARK 465 LYS A 291 REMARK 465 GLU A 292 REMARK 465 GLN A 293 REMARK 465 SER A 294 REMARK 465 SER A 368 REMARK 465 GLY B 43 REMARK 465 PRO B 44 REMARK 465 GLY B 45 REMARK 465 ASP B 46 REMARK 465 SER B 47 REMARK 465 ALA B 257 REMARK 465 ARG B 258 REMARK 465 ASN B 259 REMARK 465 SER B 260 REMARK 465 ARG B 261 REMARK 465 LEU B 281 REMARK 465 PRO B 282 REMARK 465 THR B 283 REMARK 465 GLU B 284 REMARK 465 GLU B 285 REMARK 465 ASP B 286 REMARK 465 LEU B 287 REMARK 465 GLY B 288 REMARK 465 ASP B 289 REMARK 465 THR B 290 REMARK 465 LYS B 291 REMARK 465 GLU B 292 REMARK 465 GLN B 293 REMARK 465 SER B 294 REMARK 465 GLY B 367 REMARK 465 SER B 368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 ARG A 184 CG CD NE CZ NH1 NH2 REMARK 470 THR A 262 OG1 CG2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 ASP A 276 CG OD1 OD2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 PHE A 312 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 87 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 299 CG CD OE1 OE2 REMARK 470 ASP B 311 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 60 O HOH B 501 2.05 REMARK 500 O MET B 224 O HOH B 502 2.13 REMARK 500 NH1 ARG B 254 O ALA B 358 2.16 REMARK 500 O GLN B 59 N CYS B 61 2.16 REMARK 500 OG SER B 88 OE1 GLU B 91 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 323 CB VAL A 323 CG2 0.210 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 185 CA - CB - CG ANGL. DEV. = 13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 59 -134.39 43.75 REMARK 500 ARG A 111 49.77 -109.04 REMARK 500 PRO A 117 42.87 -84.81 REMARK 500 LEU A 195 -10.03 81.71 REMARK 500 ILE A 296 88.59 53.57 REMARK 500 HIS A 297 61.58 -173.09 REMARK 500 ASP A 311 13.18 53.15 REMARK 500 PHE A 312 41.85 -143.89 REMARK 500 VAL A 323 -80.39 -20.83 REMARK 500 ASP A 332 -119.27 58.78 REMARK 500 GLN B 59 -2.34 73.27 REMARK 500 THR B 60 32.61 -59.33 REMARK 500 ARG B 111 61.81 -111.36 REMARK 500 PRO B 117 45.08 -82.30 REMARK 500 ASP B 311 -92.88 -61.01 REMARK 500 ASP B 332 -121.85 60.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 175 SG REMARK 620 2 CYS A 178 SG 111.7 REMARK 620 3 CYS A 226 SG 110.0 97.1 REMARK 620 4 CYS A 229 SG 119.3 111.0 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 334 NE2 REMARK 620 2 CYS A 336 SG 127.7 REMARK 620 3 HIS B 334 NE2 100.5 102.8 REMARK 620 4 CYS B 336 SG 90.0 124.8 108.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 175 SG REMARK 620 2 CYS B 178 SG 112.1 REMARK 620 3 CYS B 226 SG 104.1 105.0 REMARK 620 4 CYS B 229 SG 116.2 114.1 103.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 DBREF 5CHT A 46 368 UNP Q9WTV6 UBP18_MOUSE 46 368 DBREF 5CHT B 46 368 UNP Q9WTV6 UBP18_MOUSE 46 368 SEQADV 5CHT GLY A 43 UNP Q9WTV6 EXPRESSION TAG SEQADV 5CHT PRO A 44 UNP Q9WTV6 EXPRESSION TAG SEQADV 5CHT GLY A 45 UNP Q9WTV6 EXPRESSION TAG SEQADV 5CHT GLY B 43 UNP Q9WTV6 EXPRESSION TAG SEQADV 5CHT PRO B 44 UNP Q9WTV6 EXPRESSION TAG SEQADV 5CHT GLY B 45 UNP Q9WTV6 EXPRESSION TAG SEQRES 1 A 326 GLY PRO GLY ASP SER PRO HIS GLY LEU VAL GLY LEU HIS SEQRES 2 A 326 ASN ILE GLY GLN THR CYS CYS LEU ASN SER LEU LEU GLN SEQRES 3 A 326 VAL PHE MET MET ASN MET ASP PHE ARG MET ILE LEU LYS SEQRES 4 A 326 ARG ILE THR VAL PRO ARG SER ALA GLU GLU ARG LYS ARG SEQRES 5 A 326 SER VAL PRO PHE GLN LEU LEU LEU LEU LEU GLU LYS MET SEQRES 6 A 326 GLN ASP SER ARG GLN LYS ALA VAL LEU PRO THR GLU LEU SEQRES 7 A 326 VAL GLN CYS LEU GLN LYS TYR ASN VAL PRO LEU PHE VAL SEQRES 8 A 326 GLN HIS ASP ALA ALA GLN LEU TYR LEU THR ILE TRP ASN SEQRES 9 A 326 LEU THR LYS ASP GLN ILE THR ASP THR ASP LEU THR GLU SEQRES 10 A 326 ARG LEU GLN GLY LEU PHE THR ILE TRP THR GLN GLU SER SEQRES 11 A 326 LEU ILE CYS VAL GLY CYS THR ALA GLU SER SER ARG ARG SEQRES 12 A 326 SER LYS LEU LEU THR LEU SER LEU PRO LEU PHE ASP LYS SEQRES 13 A 326 ASP ALA LYS PRO LEU LYS THR LEU GLU ASP ALA LEU ARG SEQRES 14 A 326 CYS PHE VAL GLN PRO LYS GLU LEU ALA SER SER ASP MET SEQRES 15 A 326 CYS CYS GLU SER CYS GLY GLU LYS THR PRO TRP LYS GLN SEQRES 16 A 326 VAL LEU LYS LEU THR HIS LEU PRO GLN THR LEU THR ILE SEQRES 17 A 326 HIS LEU MET ARG PHE SER ALA ARG ASN SER ARG THR GLU SEQRES 18 A 326 LYS ILE CYS HIS SER VAL ASN PHE PRO GLN SER LEU ASP SEQRES 19 A 326 PHE SER GLN VAL LEU PRO THR GLU GLU ASP LEU GLY ASP SEQRES 20 A 326 THR LYS GLU GLN SER GLU ILE HIS TYR GLU LEU PHE ALA SEQRES 21 A 326 VAL ILE ALA HIS VAL GLY MET ALA ASP PHE GLY HIS TYR SEQRES 22 A 326 CYS ALA TYR ILE ARG ASN PRO VAL ASP GLY LYS TRP PHE SEQRES 23 A 326 CYS PHE ASN ASP SER HIS VAL CYS TRP VAL THR TRP LYS SEQRES 24 A 326 ASP VAL GLN CYS THR TYR GLY ASN HIS ARG TYR ARG TRP SEQRES 25 A 326 ARG GLU THR ALA TYR LEU LEU VAL TYR THR LYS THR GLY SEQRES 26 A 326 SER SEQRES 1 B 326 GLY PRO GLY ASP SER PRO HIS GLY LEU VAL GLY LEU HIS SEQRES 2 B 326 ASN ILE GLY GLN THR CYS CYS LEU ASN SER LEU LEU GLN SEQRES 3 B 326 VAL PHE MET MET ASN MET ASP PHE ARG MET ILE LEU LYS SEQRES 4 B 326 ARG ILE THR VAL PRO ARG SER ALA GLU GLU ARG LYS ARG SEQRES 5 B 326 SER VAL PRO PHE GLN LEU LEU LEU LEU LEU GLU LYS MET SEQRES 6 B 326 GLN ASP SER ARG GLN LYS ALA VAL LEU PRO THR GLU LEU SEQRES 7 B 326 VAL GLN CYS LEU GLN LYS TYR ASN VAL PRO LEU PHE VAL SEQRES 8 B 326 GLN HIS ASP ALA ALA GLN LEU TYR LEU THR ILE TRP ASN SEQRES 9 B 326 LEU THR LYS ASP GLN ILE THR ASP THR ASP LEU THR GLU SEQRES 10 B 326 ARG LEU GLN GLY LEU PHE THR ILE TRP THR GLN GLU SER SEQRES 11 B 326 LEU ILE CYS VAL GLY CYS THR ALA GLU SER SER ARG ARG SEQRES 12 B 326 SER LYS LEU LEU THR LEU SER LEU PRO LEU PHE ASP LYS SEQRES 13 B 326 ASP ALA LYS PRO LEU LYS THR LEU GLU ASP ALA LEU ARG SEQRES 14 B 326 CYS PHE VAL GLN PRO LYS GLU LEU ALA SER SER ASP MET SEQRES 15 B 326 CYS CYS GLU SER CYS GLY GLU LYS THR PRO TRP LYS GLN SEQRES 16 B 326 VAL LEU LYS LEU THR HIS LEU PRO GLN THR LEU THR ILE SEQRES 17 B 326 HIS LEU MET ARG PHE SER ALA ARG ASN SER ARG THR GLU SEQRES 18 B 326 LYS ILE CYS HIS SER VAL ASN PHE PRO GLN SER LEU ASP SEQRES 19 B 326 PHE SER GLN VAL LEU PRO THR GLU GLU ASP LEU GLY ASP SEQRES 20 B 326 THR LYS GLU GLN SER GLU ILE HIS TYR GLU LEU PHE ALA SEQRES 21 B 326 VAL ILE ALA HIS VAL GLY MET ALA ASP PHE GLY HIS TYR SEQRES 22 B 326 CYS ALA TYR ILE ARG ASN PRO VAL ASP GLY LYS TRP PHE SEQRES 23 B 326 CYS PHE ASN ASP SER HIS VAL CYS TRP VAL THR TRP LYS SEQRES 24 B 326 ASP VAL GLN CYS THR TYR GLY ASN HIS ARG TYR ARG TRP SEQRES 25 B 326 ARG GLU THR ALA TYR LEU LEU VAL TYR THR LYS THR GLY SEQRES 26 B 326 SER HET ZN A 401 1 HET ZN A 402 1 HET ZN B 401 1 HETNAM ZN ZINC ION FORMUL 3 ZN 3(ZN 2+) FORMUL 6 HOH *55(H2 O) HELIX 1 AA1 THR A 60 MET A 72 1 13 HELIX 2 AA2 ASN A 73 ARG A 82 1 10 HELIX 3 AA3 SER A 88 SER A 95 1 8 HELIX 4 AA4 SER A 95 SER A 110 1 16 HELIX 5 AA5 PRO A 117 LYS A 126 1 10 HELIX 6 AA6 PRO A 130 ASP A 136 1 7 HELIX 7 AA7 ASP A 136 ILE A 152 1 17 HELIX 8 AA8 ASP A 154 THR A 166 1 13 HELIX 9 AA9 THR A 205 VAL A 214 1 10 HELIX 10 AB1 THR A 339 GLN A 344 1 6 HELIX 11 AB2 CYS A 345 TYR A 347 5 3 HELIX 12 AB3 THR B 60 MET B 72 1 13 HELIX 13 AB4 ASN B 73 ARG B 82 1 10 HELIX 14 AB5 SER B 88 SER B 95 1 8 HELIX 15 AB6 SER B 95 SER B 110 1 16 HELIX 16 AB7 PRO B 117 LYS B 126 1 10 HELIX 17 AB8 ASP B 136 ILE B 152 1 17 HELIX 18 AB9 ASP B 154 THR B 166 1 13 HELIX 19 AC1 THR B 205 VAL B 214 1 10 HELIX 20 AC2 THR B 339 GLN B 344 1 6 HELIX 21 AC3 CYS B 345 GLY B 348 5 4 SHEET 1 AA1 2 GLY A 53 LEU A 54 0 SHEET 2 AA1 2 ALA A 114 VAL A 115 1 O VAL A 115 N GLY A 53 SHEET 1 AA2 4 SER A 183 LEU A 188 0 SHEET 2 AA2 4 ILE A 167 CYS A 175 -1 N THR A 169 O SER A 186 SHEET 3 AA2 4 TRP A 235 HIS A 243 -1 O LYS A 240 N GLN A 170 SHEET 4 AA2 4 LYS A 217 LEU A 219 -1 N LYS A 217 O GLN A 237 SHEET 1 AA3 5 THR A 190 LEU A 193 0 SHEET 2 AA3 5 THR A 247 LEU A 252 1 O HIS A 251 N LEU A 193 SHEET 3 AA3 5 THR A 357 LYS A 365 -1 O TYR A 363 N LEU A 248 SHEET 4 AA3 5 TYR A 298 MET A 309 -1 N ILE A 304 O TYR A 359 SHEET 5 AA3 5 SER A 274 LEU A 275 -1 N LEU A 275 O TYR A 298 SHEET 1 AA4 7 THR A 190 LEU A 193 0 SHEET 2 AA4 7 THR A 247 LEU A 252 1 O HIS A 251 N LEU A 193 SHEET 3 AA4 7 THR A 357 LYS A 365 -1 O TYR A 363 N LEU A 248 SHEET 4 AA4 7 TYR A 298 MET A 309 -1 N ILE A 304 O TYR A 359 SHEET 5 AA4 7 PHE A 312 ARG A 320 -1 O TYR A 318 N VAL A 303 SHEET 6 AA4 7 TRP A 327 ASN A 331 -1 O PHE A 330 N ALA A 317 SHEET 7 AA4 7 HIS A 334 VAL A 338 -1 O HIS A 334 N ASN A 331 SHEET 1 AA5 2 PHE A 255 SER A 256 0 SHEET 2 AA5 2 GLU A 263 LYS A 264 -1 O GLU A 263 N SER A 256 SHEET 1 AA6 2 GLY B 53 LEU B 54 0 SHEET 2 AA6 2 ALA B 114 VAL B 115 1 O VAL B 115 N GLY B 53 SHEET 1 AA7 4 GLU B 181 LEU B 188 0 SHEET 2 AA7 4 ILE B 167 CYS B 175 -1 N THR B 169 O SER B 186 SHEET 3 AA7 4 TRP B 235 HIS B 243 -1 O HIS B 243 N TRP B 168 SHEET 4 AA7 4 LYS B 217 LEU B 219 -1 N LYS B 217 O GLN B 237 SHEET 1 AA8 5 THR B 190 LEU B 193 0 SHEET 2 AA8 5 THR B 247 LEU B 252 1 O HIS B 251 N LEU B 191 SHEET 3 AA8 5 THR B 357 LYS B 365 -1 O TYR B 363 N LEU B 248 SHEET 4 AA8 5 HIS B 297 GLY B 308 -1 N PHE B 301 O VAL B 362 SHEET 5 AA8 5 SER B 274 ASP B 276 -1 N LEU B 275 O TYR B 298 SHEET 1 AA9 7 THR B 190 LEU B 193 0 SHEET 2 AA9 7 THR B 247 LEU B 252 1 O HIS B 251 N LEU B 191 SHEET 3 AA9 7 THR B 357 LYS B 365 -1 O TYR B 363 N LEU B 248 SHEET 4 AA9 7 HIS B 297 GLY B 308 -1 N PHE B 301 O VAL B 362 SHEET 5 AA9 7 GLY B 313 ARG B 320 -1 O TYR B 318 N VAL B 303 SHEET 6 AA9 7 TRP B 327 ASN B 331 -1 O PHE B 330 N ALA B 317 SHEET 7 AA9 7 HIS B 334 VAL B 338 -1 O HIS B 334 N ASN B 331 LINK SG CYS A 175 ZN ZN A 401 1555 1555 2.40 LINK SG CYS A 178 ZN ZN A 401 1555 1555 2.22 LINK SG CYS A 226 ZN ZN A 401 1555 1555 2.37 LINK SG CYS A 229 ZN ZN A 401 1555 1555 2.32 LINK NE2 HIS A 334 ZN ZN A 402 1555 1555 1.99 LINK SG CYS A 336 ZN ZN A 402 1555 1555 2.28 LINK ZN ZN A 402 NE2 HIS B 334 1555 1555 1.97 LINK ZN ZN A 402 SG CYS B 336 1555 1555 2.46 LINK SG CYS B 175 ZN ZN B 401 1555 1555 2.34 LINK SG CYS B 178 ZN ZN B 401 1555 1555 2.13 LINK SG CYS B 226 ZN ZN B 401 1555 1555 2.44 LINK SG CYS B 229 ZN ZN B 401 1555 1555 2.26 SITE 1 AC1 4 CYS A 175 CYS A 178 CYS A 226 CYS A 229 SITE 1 AC2 4 HIS A 334 CYS A 336 HIS B 334 CYS B 336 SITE 1 AC3 4 CYS B 175 CYS B 178 CYS B 226 CYS B 229 CRYST1 53.959 89.747 149.406 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018533 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006693 0.00000