HEADER OXIDOREDUCTASE 10-JUL-15 5CI0 TITLE RIBONUCLEOTIDE REDUCTASE Y122 3,5-F2Y VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1, BETA SUBUNIT, COMPND 3 FERRITIN-LIKE PROTEIN; COMPND 4 CHAIN: A; COMPND 5 EC: 1.17.4.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI 1303; SOURCE 3 ORGANISM_TAXID: 745156; SOURCE 4 GENE: NRDB, EC1303_C24130; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS UNNATURAL AMINO ACID, FLUOROTYROSINE, FERRITIN SUPERFAMILY, KEYWDS 2 METALLOENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.FUNK,C.L.DRENNAN REVDAT 7 15-NOV-23 5CI0 1 LINK REVDAT 6 27-SEP-23 5CI0 1 REMARK REVDAT 5 27-NOV-19 5CI0 1 REMARK REVDAT 4 21-MAR-18 5CI0 1 REMARK REVDAT 3 20-SEP-17 5CI0 1 REMARK REVDAT 2 13-JUL-16 5CI0 1 JRNL REVDAT 1 22-JUN-16 5CI0 0 JRNL AUTH P.H.OYALA,K.R.RAVICHANDRAN,M.A.FUNK,P.A.STUCKY,T.A.STICH, JRNL AUTH 2 C.L.DRENNAN,R.D.BRITT,J.STUBBE JRNL TITL BIOPHYSICAL CHARACTERIZATION OF FLUOROTYROSINE PROBES JRNL TITL 2 SITE-SPECIFICALLY INCORPORATED INTO ENZYMES: E. COLI JRNL TITL 3 RIBONUCLEOTIDE REDUCTASE AS AN EXAMPLE. JRNL REF J.AM.CHEM.SOC. V. 138 7951 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 27276098 JRNL DOI 10.1021/JACS.6B03605 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 24894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8160 - 4.6794 1.00 2865 152 0.1535 0.1742 REMARK 3 2 4.6794 - 3.7147 1.00 2701 142 0.1429 0.1782 REMARK 3 3 3.7147 - 3.2453 1.00 2645 139 0.1808 0.2234 REMARK 3 4 3.2453 - 2.9486 1.00 2616 138 0.2121 0.2489 REMARK 3 5 2.9486 - 2.7373 1.00 2602 138 0.2271 0.2946 REMARK 3 6 2.7373 - 2.5760 1.00 2592 137 0.2234 0.2301 REMARK 3 7 2.5760 - 2.4470 1.00 2580 135 0.2418 0.2706 REMARK 3 8 2.4470 - 2.3404 0.99 2547 136 0.2626 0.2933 REMARK 3 9 2.3404 - 2.2503 0.96 2498 131 0.3081 0.3292 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2942 REMARK 3 ANGLE : 0.688 3988 REMARK 3 CHIRALITY : 0.027 437 REMARK 3 PLANARITY : 0.003 511 REMARK 3 DIHEDRAL : 14.722 1082 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9053 -37.2185 -10.6830 REMARK 3 T TENSOR REMARK 3 T11: 0.5522 T22: 0.5220 REMARK 3 T33: 0.4204 T12: 0.1530 REMARK 3 T13: -0.0909 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 1.2594 L22: 4.8119 REMARK 3 L33: 1.8502 L12: 1.5489 REMARK 3 L13: 0.4845 L23: 1.5163 REMARK 3 S TENSOR REMARK 3 S11: 0.0903 S12: 0.2405 S13: -0.2239 REMARK 3 S21: 0.4190 S22: 0.2875 S23: -0.1740 REMARK 3 S31: 0.5226 S32: 0.1151 S33: -0.2935 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3402 -29.5765 -7.6989 REMARK 3 T TENSOR REMARK 3 T11: 0.4621 T22: 0.5978 REMARK 3 T33: 0.5270 T12: 0.1924 REMARK 3 T13: -0.1572 T23: -0.1634 REMARK 3 L TENSOR REMARK 3 L11: 1.5583 L22: 2.7861 REMARK 3 L33: 2.4377 L12: 0.8226 REMARK 3 L13: 0.6523 L23: 1.2179 REMARK 3 S TENSOR REMARK 3 S11: 0.1190 S12: 0.3599 S13: -0.3672 REMARK 3 S21: 0.6104 S22: 0.3701 S23: -0.7527 REMARK 3 S31: 0.3730 S32: 0.7079 S33: -0.3362 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5852 -26.5817 6.2369 REMARK 3 T TENSOR REMARK 3 T11: 0.8344 T22: 0.5687 REMARK 3 T33: 0.5840 T12: 0.2034 REMARK 3 T13: -0.2959 T23: -0.1376 REMARK 3 L TENSOR REMARK 3 L11: 1.6048 L22: 4.0714 REMARK 3 L33: 2.4480 L12: 0.6336 REMARK 3 L13: 0.3138 L23: -0.6965 REMARK 3 S TENSOR REMARK 3 S11: 0.0931 S12: 0.0050 S13: -0.3146 REMARK 3 S21: 0.9876 S22: 0.1564 S23: -0.8101 REMARK 3 S31: 0.3127 S32: 0.4613 S33: -0.2040 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 320 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.7813 -22.2247 8.4533 REMARK 3 T TENSOR REMARK 3 T11: 0.9485 T22: 0.6208 REMARK 3 T33: 0.5707 T12: 0.2002 REMARK 3 T13: -0.0780 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 2.7737 L22: 7.5977 REMARK 3 L33: 2.4141 L12: -3.0932 REMARK 3 L13: -1.5726 L23: -0.6419 REMARK 3 S TENSOR REMARK 3 S11: 0.2307 S12: 0.0014 S13: -0.2543 REMARK 3 S21: 0.7105 S22: 0.1555 S23: 0.3383 REMARK 3 S31: 0.2564 S32: -0.5139 S33: -0.3935 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CI0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25037 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.67500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ALX REMARK 200 REMARK 200 REMARK: LARGE, THREE-DIMENSIONAL, YELLOW-GREEN HEXAGONS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M (NH4)2SO4, 0.9-1.2 M KCL, AND REMARK 280 0.1 M TRIS; 1:1 PROTEIN TO PRECIPITANT; CRYSTALS GROW OVER 1-3 REMARK 280 DAYS, PH 8.0, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.55000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 137.10000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 102.82500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 171.37500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.27500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.55000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 137.10000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 171.37500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 102.82500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 34.27500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -145.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 -45.80650 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 -79.33919 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -34.27500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 524 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 347 REMARK 465 PRO A 348 REMARK 465 GLN A 349 REMARK 465 GLU A 350 REMARK 465 VAL A 351 REMARK 465 GLU A 352 REMARK 465 VAL A 353 REMARK 465 SER A 354 REMARK 465 SER A 355 REMARK 465 TYR A 356 REMARK 465 LEU A 357 REMARK 465 VAL A 358 REMARK 465 GLY A 359 REMARK 465 GLN A 360 REMARK 465 ILE A 361 REMARK 465 ASP A 362 REMARK 465 SER A 363 REMARK 465 GLU A 364 REMARK 465 VAL A 365 REMARK 465 ASP A 366 REMARK 465 THR A 367 REMARK 465 ASP A 368 REMARK 465 ASP A 369 REMARK 465 LEU A 370 REMARK 465 SER A 371 REMARK 465 ASN A 372 REMARK 465 PHE A 373 REMARK 465 GLN A 374 REMARK 465 LEU A 375 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 602 O HOH A 602 10444 2.07 REMARK 500 NE2 GLN A 7 OE2 GLU A 151 10444 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 24 -81.78 -92.15 REMARK 500 SER A 295 -164.72 -111.67 REMARK 500 LEU A 339 47.68 -93.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 84 OD2 REMARK 620 2 FEO A 401 O 157.8 REMARK 620 3 GLU A 115 OE1 91.7 95.1 REMARK 620 4 HIS A 118 ND1 100.5 99.3 99.2 REMARK 620 5 HOH A 587 O 81.6 85.0 160.5 100.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 115 OE2 REMARK 620 2 FEO A 401 O 97.7 REMARK 620 3 GLU A 204 OE1 82.9 175.1 REMARK 620 4 GLU A 238 OE1 168.9 92.4 87.4 REMARK 620 5 HIS A 241 ND1 82.2 94.0 90.9 92.7 REMARK 620 6 HOH A 545 O 90.7 85.0 90.1 94.6 172.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FEO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CI1 RELATED DB: PDB REMARK 900 RELATED ID: 5CI2 RELATED DB: PDB REMARK 900 RELATED ID: 5CI3 RELATED DB: PDB REMARK 900 RELATED ID: 5CI4 RELATED DB: PDB DBREF1 5CI0 A 1 375 UNP A0A0E1LZC3_ECOLX DBREF2 5CI0 A A0A0E1LZC3 2 376 SEQADV 5CI0 F2Y A 122 UNP A0A0E1LZC TYR 123 ENGINEERED MUTATION SEQRES 1 A 375 ALA TYR THR THR PHE SER GLN THR LYS ASN ASP GLN LEU SEQRES 2 A 375 LYS GLU PRO MET PHE PHE GLY GLN PRO VAL ASN VAL ALA SEQRES 3 A 375 ARG TYR ASP GLN GLN LYS TYR ASP ILE PHE GLU LYS LEU SEQRES 4 A 375 ILE GLU LYS GLN LEU SER PHE PHE TRP ARG PRO GLU GLU SEQRES 5 A 375 VAL ASP VAL SER ARG ASP ARG ILE ASP TYR GLN ALA LEU SEQRES 6 A 375 PRO GLU HIS GLU LYS HIS ILE PHE ILE SER ASN LEU LYS SEQRES 7 A 375 TYR GLN THR LEU LEU ASP SER ILE GLN GLY ARG SER PRO SEQRES 8 A 375 ASN VAL ALA LEU LEU PRO LEU ILE SER ILE PRO GLU LEU SEQRES 9 A 375 GLU THR TRP VAL GLU THR TRP ALA PHE SER GLU THR ILE SEQRES 10 A 375 HIS SER ARG SER F2Y THR HIS ILE ILE ARG ASN ILE VAL SEQRES 11 A 375 ASN ASP PRO SER VAL VAL PHE ASP ASP ILE VAL THR ASN SEQRES 12 A 375 GLU GLN ILE GLN LYS ARG ALA GLU GLY ILE SER SER TYR SEQRES 13 A 375 TYR ASP GLU LEU ILE GLU MET THR SER TYR TRP HIS LEU SEQRES 14 A 375 LEU GLY GLU GLY THR HIS THR VAL ASN GLY LYS THR VAL SEQRES 15 A 375 THR VAL SER LEU ARG GLU LEU LYS LYS LYS LEU TYR LEU SEQRES 16 A 375 CYS LEU MET SER VAL ASN ALA LEU GLU ALA ILE ARG PHE SEQRES 17 A 375 TYR VAL SER PHE ALA CYS SER PHE ALA PHE ALA GLU ARG SEQRES 18 A 375 GLU LEU MET GLU GLY ASN ALA LYS ILE ILE ARG LEU ILE SEQRES 19 A 375 ALA ARG ASP GLU ALA LEU HIS LEU THR GLY THR GLN HIS SEQRES 20 A 375 MET LEU ASN LEU LEU ARG SER GLY ALA ASP ASP PRO GLU SEQRES 21 A 375 MET ALA GLU ILE ALA GLU GLU CYS LYS GLN GLU CYS TYR SEQRES 22 A 375 ASP LEU PHE VAL GLN ALA ALA GLN GLN GLU LYS ASP TRP SEQRES 23 A 375 ALA ASP TYR LEU PHE ARG ASP GLY SER MET ILE GLY LEU SEQRES 24 A 375 ASN LYS ASP ILE LEU CYS GLN TYR VAL GLU TYR ILE THR SEQRES 25 A 375 ASN ILE ARG MET GLN ALA VAL GLY LEU ASP LEU PRO PHE SEQRES 26 A 375 GLN THR ARG SER ASN PRO ILE PRO TRP ILE ASN THR TRP SEQRES 27 A 375 LEU VAL SER ASP ASN VAL GLN VAL ALA PRO GLN GLU VAL SEQRES 28 A 375 GLU VAL SER SER TYR LEU VAL GLY GLN ILE ASP SER GLU SEQRES 29 A 375 VAL ASP THR ASP ASP LEU SER ASN PHE GLN LEU HET F2Y A 122 14 HET FEO A 401 3 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HETNAM F2Y 3,5-DIFLUORO-L-TYROSINE HETNAM FEO MU-OXO-DIIRON HETNAM SO4 SULFATE ION FORMUL 1 F2Y C9 H9 F2 N O3 FORMUL 2 FEO FE2 O FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *210(H2 O) HELIX 1 AA1 ASP A 11 GLU A 15 5 5 HELIX 2 AA2 TYR A 33 PHE A 46 1 14 HELIX 3 AA3 ARG A 49 VAL A 53 5 5 HELIX 4 AA4 SER A 56 LEU A 65 1 10 HELIX 5 AA5 PRO A 66 LEU A 96 1 31 HELIX 6 AA6 PRO A 97 ILE A 99 5 3 HELIX 7 AA7 ILE A 101 VAL A 130 1 30 HELIX 8 AA8 ASP A 132 ASN A 143 1 12 HELIX 9 AA9 ASN A 143 GLY A 171 1 29 HELIX 10 AB1 SER A 185 ILE A 206 1 22 HELIX 11 AB2 ILE A 206 ARG A 221 1 16 HELIX 12 AB3 MET A 224 GLY A 255 1 32 HELIX 13 AB4 ASP A 258 CYS A 268 1 11 HELIX 14 AB5 CYS A 268 PHE A 291 1 24 HELIX 15 AB6 ASN A 300 VAL A 319 1 20 HELIX 16 AB7 ILE A 332 TRP A 338 5 7 SHEET 1 AA1 2 GLY A 173 VAL A 177 0 SHEET 2 AA1 2 LYS A 180 VAL A 184 -1 O VAL A 182 N HIS A 175 LINK C SER A 121 N F2Y A 122 1555 1555 1.33 LINK C F2Y A 122 N THR A 123 1555 1555 1.33 LINK OD2 ASP A 84 FE2 FEO A 401 1555 1555 2.00 LINK OE1 GLU A 115 FE2 FEO A 401 1555 1555 2.03 LINK OE2 GLU A 115 FE1 FEO A 401 1555 1555 2.10 LINK ND1 HIS A 118 FE2 FEO A 401 1555 1555 2.14 LINK OE1 GLU A 204 FE1 FEO A 401 1555 1555 2.01 LINK OE1 GLU A 238 FE1 FEO A 401 1555 1555 2.05 LINK ND1 HIS A 241 FE1 FEO A 401 1555 1555 2.17 LINK FE1 FEO A 401 O HOH A 545 1555 1555 2.23 LINK FE2 FEO A 401 O HOH A 587 1555 1555 2.29 SITE 1 AC1 8 ASP A 84 GLU A 115 HIS A 118 GLU A 204 SITE 2 AC1 8 GLU A 238 HIS A 241 HOH A 545 HOH A 587 SITE 1 AC2 6 PRO A 66 GLU A 67 ASN A 300 HOH A 536 SITE 2 AC2 6 HOH A 616 HOH A 624 SITE 1 AC3 4 GLN A 145 ARG A 149 ASP A 285 HOH A 560 SITE 1 AC4 3 ARG A 236 ASP A 342 ASN A 343 SITE 1 AC5 3 TYR A 289 ARG A 292 HOH A 514 CRYST1 91.613 91.613 205.650 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010915 0.006302 0.000000 0.00000 SCALE2 0.000000 0.012604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004863 0.00000