HEADER OXIDOREDUCTASE 10-JUL-15 5CI1 TITLE RIBONUCLEOTIDE REDUCTASE Y122 2,3-F2Y VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1, BETA SUBUNIT, COMPND 3 FERRITIN-LIKE PROTEIN; COMPND 4 CHAIN: A; COMPND 5 EC: 1.17.4.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI 1303; SOURCE 3 ORGANISM_TAXID: 745156; SOURCE 4 GENE: NRDB, EC1303_C24130; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS UNNATURAL AMINO ACID, FLUOROTYROSINE, FERRITIN SUPERFAMILY, KEYWDS 2 METALLOENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.FUNK,C.L.DRENNAN REVDAT 7 15-NOV-23 5CI1 1 LINK REVDAT 6 27-SEP-23 5CI1 1 REMARK REVDAT 5 27-NOV-19 5CI1 1 REMARK REVDAT 4 21-MAR-18 5CI1 1 REMARK REVDAT 3 20-SEP-17 5CI1 1 REMARK REVDAT 2 13-JUL-16 5CI1 1 JRNL REVDAT 1 22-JUN-16 5CI1 0 JRNL AUTH P.H.OYALA,K.R.RAVICHANDRAN,M.A.FUNK,P.A.STUCKY,T.A.STICH, JRNL AUTH 2 C.L.DRENNAN,R.D.BRITT,J.STUBBE JRNL TITL BIOPHYSICAL CHARACTERIZATION OF FLUOROTYROSINE PROBES JRNL TITL 2 SITE-SPECIFICALLY INCORPORATED INTO ENZYMES: E. COLI JRNL TITL 3 RIBONUCLEOTIDE REDUCTASE AS AN EXAMPLE. JRNL REF J.AM.CHEM.SOC. V. 138 7951 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 27276098 JRNL DOI 10.1021/JACS.6B03605 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 36925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0065 - 4.5826 0.90 2751 149 0.1468 0.1469 REMARK 3 2 4.5826 - 3.6383 0.96 2738 136 0.1143 0.1368 REMARK 3 3 3.6383 - 3.1787 0.96 2699 146 0.1598 0.1906 REMARK 3 4 3.1787 - 2.8881 0.97 2674 147 0.1766 0.2202 REMARK 3 5 2.8881 - 2.6812 0.99 2750 138 0.1628 0.1952 REMARK 3 6 2.6812 - 2.5231 1.00 2731 144 0.1556 0.2140 REMARK 3 7 2.5231 - 2.3968 0.96 2635 130 0.1510 0.1978 REMARK 3 8 2.3968 - 2.2925 0.99 2707 140 0.1509 0.1784 REMARK 3 9 2.2925 - 2.2042 1.00 2699 141 0.1746 0.2377 REMARK 3 10 2.2042 - 2.1282 1.00 2718 143 0.1750 0.2192 REMARK 3 11 2.1282 - 2.0617 1.00 2680 140 0.1901 0.2227 REMARK 3 12 2.0617 - 2.0027 0.97 2642 136 0.2169 0.2570 REMARK 3 13 2.0027 - 1.9500 0.99 2673 138 0.2495 0.2906 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3024 REMARK 3 ANGLE : 1.327 4111 REMARK 3 CHIRALITY : 0.057 448 REMARK 3 PLANARITY : 0.007 530 REMARK 3 DIHEDRAL : 15.964 1114 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6909 -32.6233 -10.8061 REMARK 3 T TENSOR REMARK 3 T11: 0.3135 T22: 0.2685 REMARK 3 T33: 0.1977 T12: 0.0167 REMARK 3 T13: -0.0840 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 1.1548 L22: 3.5819 REMARK 3 L33: 0.8581 L12: 1.1540 REMARK 3 L13: 0.2738 L23: 0.7406 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: 0.1157 S13: -0.2036 REMARK 3 S21: 0.1668 S22: 0.1635 S23: -0.2820 REMARK 3 S31: 0.1088 S32: -0.0099 S33: -0.2065 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7243 -30.9068 -8.9220 REMARK 3 T TENSOR REMARK 3 T11: 0.3264 T22: 0.3090 REMARK 3 T33: 0.3924 T12: 0.0443 REMARK 3 T13: -0.1517 T23: -0.0982 REMARK 3 L TENSOR REMARK 3 L11: 1.1941 L22: 1.9127 REMARK 3 L33: 1.2016 L12: 0.6535 REMARK 3 L13: 0.1263 L23: 0.5266 REMARK 3 S TENSOR REMARK 3 S11: 0.0842 S12: 0.0854 S13: -0.3060 REMARK 3 S21: 0.3241 S22: 0.1733 S23: -0.7191 REMARK 3 S31: 0.1472 S32: 0.2805 S33: -0.1572 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8151 -27.3602 3.3638 REMARK 3 T TENSOR REMARK 3 T11: 0.5310 T22: 0.2909 REMARK 3 T33: 0.3295 T12: 0.0346 REMARK 3 T13: -0.2041 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.2057 L22: 1.9410 REMARK 3 L33: 1.0495 L12: 0.9541 REMARK 3 L13: 0.2004 L23: 0.6924 REMARK 3 S TENSOR REMARK 3 S11: 0.2468 S12: -0.0992 S13: -0.3012 REMARK 3 S21: 0.5955 S22: -0.0175 S23: -0.5679 REMARK 3 S31: 0.2586 S32: 0.0863 S33: -0.1431 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 320 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.6150 -22.6200 8.0534 REMARK 3 T TENSOR REMARK 3 T11: 0.6527 T22: 0.4022 REMARK 3 T33: 0.3457 T12: -0.0310 REMARK 3 T13: -0.1781 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.7635 L22: 4.8357 REMARK 3 L33: 1.7737 L12: -2.2591 REMARK 3 L13: -0.1431 L23: -1.7616 REMARK 3 S TENSOR REMARK 3 S11: 0.3976 S12: -0.3073 S13: -0.5153 REMARK 3 S21: 0.3194 S22: 0.1184 S23: 0.2848 REMARK 3 S31: 0.6153 S32: -0.5893 S33: -0.5311 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211310. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36925 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.78600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ALX REMARK 200 REMARK 200 REMARK: LARGE, THREE-DIMENSIONAL, YELLOW-GREEN HEXAGONS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M (NH4)2SO4, 0.9-1.2 M KCL, AND REMARK 280 0.1 M TRIS PH 8.0; 1:1 PROTEIN TO PRECIPITANT; CRYSTALS GROW REMARK 280 OVER 1-3 DAYS, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.82267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 139.64533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 104.73400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 174.55667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.91133 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.82267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 139.64533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 174.55667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 104.73400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 34.91133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -182.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 554 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 350 REMARK 465 VAL A 351 REMARK 465 GLU A 352 REMARK 465 VAL A 353 REMARK 465 SER A 354 REMARK 465 SER A 355 REMARK 465 TYR A 356 REMARK 465 LEU A 357 REMARK 465 VAL A 358 REMARK 465 GLY A 359 REMARK 465 GLN A 360 REMARK 465 ILE A 361 REMARK 465 ASP A 362 REMARK 465 SER A 363 REMARK 465 GLU A 364 REMARK 465 VAL A 365 REMARK 465 ASP A 366 REMARK 465 THR A 367 REMARK 465 ASP A 368 REMARK 465 ASP A 369 REMARK 465 LEU A 370 REMARK 465 SER A 371 REMARK 465 ASN A 372 REMARK 465 PHE A 373 REMARK 465 GLN A 374 REMARK 465 LEU A 375 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 516 O HOH A 516 10444 1.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 24 -81.88 -92.65 REMARK 500 ASN A 24 -79.40 -92.65 REMARK 500 ASN A 24 -81.43 -92.65 REMARK 500 SER A 295 -165.74 -110.10 REMARK 500 PRO A 348 133.00 -39.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 84 OD2 REMARK 620 2 FEO A 401 O 163.0 REMARK 620 3 GLU A 115 OE1 94.3 91.6 REMARK 620 4 HIS A 118 ND1 98.1 97.3 94.2 REMARK 620 5 HOH A 591 O 85.2 84.9 164.3 101.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 115 OE2 REMARK 620 2 FEO A 401 O 98.4 REMARK 620 3 GLU A 204 OE1 83.0 178.5 REMARK 620 4 GLU A 238 OE1 169.5 91.8 86.8 REMARK 620 5 HIS A 241 ND1 86.8 88.7 92.2 95.9 REMARK 620 6 HOH A 547 O 86.6 84.7 94.6 92.0 169.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FEO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues FY2 A 122 REMARK 800 through THR A 123 bound to SER A 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand FY2 A 122 bound to SER A REMARK 800 121 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CI0 RELATED DB: PDB REMARK 900 RELATED ID: 5CI2 RELATED DB: PDB REMARK 900 RELATED ID: 5CI3 RELATED DB: PDB REMARK 900 RELATED ID: 5CI4 RELATED DB: PDB DBREF1 5CI1 A 1 375 UNP A0A0E1LZC3_ECOLX DBREF2 5CI1 A A0A0E1LZC3 2 376 SEQADV 5CI1 FY2 A 122 UNP A0A0E1LZC TYR 123 ENGINEERED MUTATION SEQRES 1 A 375 ALA TYR THR THR PHE SER GLN THR LYS ASN ASP GLN LEU SEQRES 2 A 375 LYS GLU PRO MET PHE PHE GLY GLN PRO VAL ASN VAL ALA SEQRES 3 A 375 ARG TYR ASP GLN GLN LYS TYR ASP ILE PHE GLU LYS LEU SEQRES 4 A 375 ILE GLU LYS GLN LEU SER PHE PHE TRP ARG PRO GLU GLU SEQRES 5 A 375 VAL ASP VAL SER ARG ASP ARG ILE ASP TYR GLN ALA LEU SEQRES 6 A 375 PRO GLU HIS GLU LYS HIS ILE PHE ILE SER ASN LEU LYS SEQRES 7 A 375 TYR GLN THR LEU LEU ASP SER ILE GLN GLY ARG SER PRO SEQRES 8 A 375 ASN VAL ALA LEU LEU PRO LEU ILE SER ILE PRO GLU LEU SEQRES 9 A 375 GLU THR TRP VAL GLU THR TRP ALA PHE SER GLU THR ILE SEQRES 10 A 375 HIS SER ARG SER FY2 THR HIS ILE ILE ARG ASN ILE VAL SEQRES 11 A 375 ASN ASP PRO SER VAL VAL PHE ASP ASP ILE VAL THR ASN SEQRES 12 A 375 GLU GLN ILE GLN LYS ARG ALA GLU GLY ILE SER SER TYR SEQRES 13 A 375 TYR ASP GLU LEU ILE GLU MET THR SER TYR TRP HIS LEU SEQRES 14 A 375 LEU GLY GLU GLY THR HIS THR VAL ASN GLY LYS THR VAL SEQRES 15 A 375 THR VAL SER LEU ARG GLU LEU LYS LYS LYS LEU TYR LEU SEQRES 16 A 375 CYS LEU MET SER VAL ASN ALA LEU GLU ALA ILE ARG PHE SEQRES 17 A 375 TYR VAL SER PHE ALA CYS SER PHE ALA PHE ALA GLU ARG SEQRES 18 A 375 GLU LEU MET GLU GLY ASN ALA LYS ILE ILE ARG LEU ILE SEQRES 19 A 375 ALA ARG ASP GLU ALA LEU HIS LEU THR GLY THR GLN HIS SEQRES 20 A 375 MET LEU ASN LEU LEU ARG SER GLY ALA ASP ASP PRO GLU SEQRES 21 A 375 MET ALA GLU ILE ALA GLU GLU CYS LYS GLN GLU CYS TYR SEQRES 22 A 375 ASP LEU PHE VAL GLN ALA ALA GLN GLN GLU LYS ASP TRP SEQRES 23 A 375 ALA ASP TYR LEU PHE ARG ASP GLY SER MET ILE GLY LEU SEQRES 24 A 375 ASN LYS ASP ILE LEU CYS GLN TYR VAL GLU TYR ILE THR SEQRES 25 A 375 ASN ILE ARG MET GLN ALA VAL GLY LEU ASP LEU PRO PHE SEQRES 26 A 375 GLN THR ARG SER ASN PRO ILE PRO TRP ILE ASN THR TRP SEQRES 27 A 375 LEU VAL SER ASP ASN VAL GLN VAL ALA PRO GLN GLU VAL SEQRES 28 A 375 GLU VAL SER SER TYR LEU VAL GLY GLN ILE ASP SER GLU SEQRES 29 A 375 VAL ASP THR ASP ASP LEU SER ASN PHE GLN LEU HET FY2 A 122 42 HET FEO A 401 3 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET CL A 406 1 HET CL A 407 1 HETNAM FY2 2,3-DIFLUORO-L-TYROSINE HETNAM FEO MU-OXO-DIIRON HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 1 FY2 C9 H9 F2 N O3 FORMUL 2 FEO FE2 O FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 CL 2(CL 1-) FORMUL 9 HOH *209(H2 O) HELIX 1 AA1 TYR A 33 PHE A 46 1 14 HELIX 2 AA2 ARG A 49 VAL A 53 5 5 HELIX 3 AA3 VAL A 55 LEU A 65 1 11 HELIX 4 AA4 PRO A 66 LEU A 96 1 31 HELIX 5 AA5 PRO A 97 ILE A 99 5 3 HELIX 6 AA6 ILE A 101 VAL A 130 1 30 HELIX 7 AA7 ASP A 132 ASN A 143 1 12 HELIX 8 AA8 ASN A 143 GLY A 171 1 29 HELIX 9 AA9 SER A 185 ILE A 206 1 22 HELIX 10 AB1 ILE A 206 ARG A 221 1 16 HELIX 11 AB2 MET A 224 GLY A 255 1 32 HELIX 12 AB3 ASP A 258 CYS A 268 1 11 HELIX 13 AB4 CYS A 268 PHE A 291 1 24 HELIX 14 AB5 ASN A 300 VAL A 319 1 20 HELIX 15 AB6 ILE A 332 TRP A 338 5 7 SHEET 1 AA1 2 GLY A 173 VAL A 177 0 SHEET 2 AA1 2 LYS A 180 VAL A 184 -1 O VAL A 184 N GLY A 173 LINK C SER A 121 N AFY2 A 122 1555 1555 1.33 LINK C SER A 121 N BFY2 A 122 1555 1555 1.33 LINK C AFY2 A 122 N THR A 123 1555 1555 1.33 LINK C BFY2 A 122 N THR A 123 1555 1555 1.33 LINK OD2 ASP A 84 FE2 FEO A 401 1555 1555 1.88 LINK OE1 GLU A 115 FE2 FEO A 401 1555 1555 2.08 LINK OE2 GLU A 115 FE1 FEO A 401 1555 1555 2.16 LINK ND1 HIS A 118 FE2 FEO A 401 1555 1555 2.19 LINK OE1 GLU A 204 FE1 FEO A 401 1555 1555 2.10 LINK OE1 GLU A 238 FE1 FEO A 401 1555 1555 2.14 LINK ND1 HIS A 241 FE1 FEO A 401 1555 1555 2.21 LINK FE1 FEO A 401 O HOH A 547 1555 1555 2.17 LINK FE2 FEO A 401 O HOH A 591 1555 1555 2.35 SITE 1 AC1 8 ASP A 84 GLU A 115 HIS A 118 GLU A 204 SITE 2 AC1 8 GLU A 238 HIS A 241 HOH A 547 HOH A 591 SITE 1 AC2 6 PRO A 66 GLU A 67 SER A 295 HOH A 503 SITE 2 AC2 6 HOH A 553 HOH A 646 SITE 1 AC3 3 ARG A 221 LEU A 223 HOH A 661 SITE 1 AC4 5 GLN A 145 LYS A 148 ARG A 149 ASP A 285 SITE 2 AC4 5 HOH A 537 SITE 1 AC5 4 ARG A 236 SER A 341 ASP A 342 ASN A 343 SITE 1 AC6 1 ARG A 253 SITE 1 AC7 20 ARG A 27 TYR A 28 ASP A 29 LEU A 77 SITE 2 AC7 20 GLN A 80 THR A 81 ASP A 84 HIS A 118 SITE 3 AC7 20 SER A 119 ARG A 120 SER A 121 HIS A 124 SITE 4 AC7 20 ILE A 125 ILE A 126 ARG A 127 PHE A 137 SITE 5 AC7 20 PHE A 208 ILE A 231 ILE A 234 HOH A 525 SITE 1 AC8 15 LEU A 77 GLN A 80 THR A 81 ASP A 84 SITE 2 AC8 15 HIS A 118 SER A 119 ARG A 120 SER A 121 SITE 3 AC8 15 THR A 123 HIS A 124 ILE A 125 ILE A 126 SITE 4 AC8 15 PHE A 208 ILE A 231 ILE A 234 CRYST1 90.589 90.589 209.468 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011039 0.006373 0.000000 0.00000 SCALE2 0.000000 0.012747 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004774 0.00000