HEADER OXIDOREDUCTASE 10-JUL-15 5CI4 TITLE RIBONUCLEOTIDE REDUCTASE BETA SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1, BETA SUBUNIT, COMPND 3 FERRITIN-LIKE PROTEIN; COMPND 4 CHAIN: A; COMPND 5 EC: 1.17.4.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI 1303; SOURCE 3 ORGANISM_TAXID: 745156; SOURCE 4 GENE: NRDB, EC1303_C24130; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FERRITIN SUPERFAMILY, METALLOENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.FUNK,C.L.DRENNAN REVDAT 6 27-SEP-23 5CI4 1 REMARK REVDAT 5 27-NOV-19 5CI4 1 REMARK REVDAT 4 21-MAR-18 5CI4 1 REMARK REVDAT 3 20-SEP-17 5CI4 1 REMARK REVDAT 2 13-JUL-16 5CI4 1 JRNL REVDAT 1 22-JUN-16 5CI4 0 JRNL AUTH P.H.OYALA,K.R.RAVICHANDRAN,M.A.FUNK,P.A.STUCKY,T.A.STICH, JRNL AUTH 2 C.L.DRENNAN,R.D.BRITT,J.STUBBE JRNL TITL BIOPHYSICAL CHARACTERIZATION OF FLUOROTYROSINE PROBES JRNL TITL 2 SITE-SPECIFICALLY INCORPORATED INTO ENZYMES: E. COLI JRNL TITL 3 RIBONUCLEOTIDE REDUCTASE AS AN EXAMPLE. JRNL REF J.AM.CHEM.SOC. V. 138 7951 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 27276098 JRNL DOI 10.1021/JACS.6B03605 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 31746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7654 - 4.5579 0.98 3026 155 0.1526 0.1760 REMARK 3 2 4.5579 - 3.6182 0.98 2834 150 0.1464 0.1731 REMARK 3 3 3.6182 - 3.1609 0.99 2828 148 0.1916 0.2270 REMARK 3 4 3.1609 - 2.8720 0.99 2784 146 0.2307 0.2658 REMARK 3 5 2.8720 - 2.6662 0.99 2777 148 0.2463 0.2956 REMARK 3 6 2.6662 - 2.5090 0.99 2785 139 0.2492 0.3041 REMARK 3 7 2.5090 - 2.3833 0.99 2732 148 0.2702 0.3097 REMARK 3 8 2.3833 - 2.2796 0.99 2733 141 0.2759 0.3611 REMARK 3 9 2.2796 - 2.1918 0.99 2751 145 0.2929 0.3375 REMARK 3 10 2.1918 - 2.1162 0.96 2645 137 0.3145 0.4054 REMARK 3 11 2.1162 - 2.0500 0.82 2271 123 0.3446 0.3665 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3005 REMARK 3 ANGLE : 0.991 4083 REMARK 3 CHIRALITY : 0.036 447 REMARK 3 PLANARITY : 0.007 529 REMARK 3 DIHEDRAL : 15.271 1112 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9706 -49.4697 -9.4373 REMARK 3 T TENSOR REMARK 3 T11: 1.0304 T22: 0.5544 REMARK 3 T33: 0.6884 T12: 0.2259 REMARK 3 T13: -0.2154 T23: -0.1322 REMARK 3 L TENSOR REMARK 3 L11: 2.7756 L22: 4.2458 REMARK 3 L33: 2.5820 L12: 1.8908 REMARK 3 L13: 1.3235 L23: -0.3264 REMARK 3 S TENSOR REMARK 3 S11: 0.2771 S12: 0.3382 S13: -0.8006 REMARK 3 S21: 0.8240 S22: 0.3139 S23: -0.4281 REMARK 3 S31: 1.1357 S32: 0.0446 S33: -0.4960 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0406 -11.5056 -13.8160 REMARK 3 T TENSOR REMARK 3 T11: 0.7322 T22: 0.6731 REMARK 3 T33: 0.6535 T12: 0.0083 REMARK 3 T13: 0.0541 T23: 0.1371 REMARK 3 L TENSOR REMARK 3 L11: 3.8130 L22: 3.5275 REMARK 3 L33: 0.7734 L12: 3.4865 REMARK 3 L13: 0.8267 L23: 1.1793 REMARK 3 S TENSOR REMARK 3 S11: -0.8210 S12: 1.2050 S13: 0.3167 REMARK 3 S21: -0.3838 S22: 1.3344 S23: 0.4487 REMARK 3 S31: -0.3586 S32: 0.1372 S33: -0.5399 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2213 -26.2506 -11.6998 REMARK 3 T TENSOR REMARK 3 T11: 0.5661 T22: 0.6923 REMARK 3 T33: 0.5677 T12: 0.1690 REMARK 3 T13: -0.0888 T23: -0.0667 REMARK 3 L TENSOR REMARK 3 L11: 1.7664 L22: 4.5461 REMARK 3 L33: 1.9242 L12: 2.0364 REMARK 3 L13: 0.7156 L23: 2.2772 REMARK 3 S TENSOR REMARK 3 S11: -0.0891 S12: 0.5179 S13: -0.2413 REMARK 3 S21: 0.6326 S22: 0.6361 S23: -0.4796 REMARK 3 S31: 0.2471 S32: 0.4331 S33: -0.4988 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3624 -36.3781 -8.3911 REMARK 3 T TENSOR REMARK 3 T11: 0.7283 T22: 0.9786 REMARK 3 T33: 1.1543 T12: 0.5188 REMARK 3 T13: -0.4807 T23: -0.4785 REMARK 3 L TENSOR REMARK 3 L11: 1.3069 L22: 3.6787 REMARK 3 L33: 1.8903 L12: -0.1224 REMARK 3 L13: 0.2270 L23: 0.0147 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: 0.4895 S13: -0.4294 REMARK 3 S21: 1.0659 S22: 0.7856 S23: -1.5307 REMARK 3 S31: 0.3073 S32: 1.4801 S33: -0.3197 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 206 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8941 -23.3568 -1.7014 REMARK 3 T TENSOR REMARK 3 T11: 0.6919 T22: 0.4242 REMARK 3 T33: 0.3556 T12: 0.1756 REMARK 3 T13: -0.0090 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.9104 L22: 3.7930 REMARK 3 L33: 2.5252 L12: 1.9682 REMARK 3 L13: 0.5618 L23: -0.6115 REMARK 3 S TENSOR REMARK 3 S11: 0.0997 S12: 0.1967 S13: -0.1170 REMARK 3 S21: 1.2809 S22: 0.2077 S23: -0.0188 REMARK 3 S31: 0.4198 S32: 0.2063 S33: -0.2576 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5611 -26.4448 6.2717 REMARK 3 T TENSOR REMARK 3 T11: 1.2418 T22: 0.6668 REMARK 3 T33: 0.6996 T12: 0.3352 REMARK 3 T13: -0.3979 T23: -0.1721 REMARK 3 L TENSOR REMARK 3 L11: 2.1846 L22: 5.5202 REMARK 3 L33: 2.2156 L12: 0.8260 REMARK 3 L13: 0.1561 L23: -2.0595 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: -0.0886 S13: -0.2602 REMARK 3 S21: 1.2228 S22: 0.2098 S23: -0.8592 REMARK 3 S31: 0.3517 S32: 0.5111 S33: -0.1383 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 319 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9253 -23.0489 8.4809 REMARK 3 T TENSOR REMARK 3 T11: 1.3813 T22: 0.7646 REMARK 3 T33: 0.6757 T12: 0.3782 REMARK 3 T13: -0.1167 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 2.5205 L22: 4.9819 REMARK 3 L33: 1.4920 L12: -2.4716 REMARK 3 L13: -1.6714 L23: 0.5301 REMARK 3 S TENSOR REMARK 3 S11: 0.3234 S12: 0.1797 S13: -0.3547 REMARK 3 S21: 1.0339 S22: 0.0499 S23: -0.0016 REMARK 3 S31: 0.5112 S32: -0.1708 S33: -0.4101 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211652. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31952 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ALX REMARK 200 REMARK 200 REMARK: LARGE, THREE-DIMENSIONAL, YELLOW-GREEN HEXAGONS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M (NH4)2SO4, 0.9-1.2 M KCL, AND REMARK 280 0.1 M TRIS; 1:1 PROTEIN TO PRECIPITANT; CRYSTALS GROW OVER 1-3 REMARK 280 DAYS, PH 8.0, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.39300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 136.78600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 102.58950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 170.98250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.19650 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.39300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 136.78600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 170.98250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 102.58950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 34.19650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 -45.75400 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 -79.24825 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -34.19650 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 526 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 350 REMARK 465 VAL A 351 REMARK 465 GLU A 352 REMARK 465 VAL A 353 REMARK 465 SER A 354 REMARK 465 SER A 355 REMARK 465 TYR A 356 REMARK 465 LEU A 357 REMARK 465 VAL A 358 REMARK 465 GLY A 359 REMARK 465 GLN A 360 REMARK 465 ILE A 361 REMARK 465 ASP A 362 REMARK 465 SER A 363 REMARK 465 GLU A 364 REMARK 465 VAL A 365 REMARK 465 ASP A 366 REMARK 465 THR A 367 REMARK 465 ASP A 368 REMARK 465 ASP A 369 REMARK 465 LEU A 370 REMARK 465 SER A 371 REMARK 465 ASN A 372 REMARK 465 PHE A 373 REMARK 465 GLN A 374 REMARK 465 LEU A 375 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 327 O HOH A 501 2.08 REMARK 500 O HOH A 627 O HOH A 684 2.14 REMARK 500 NE2 GLN A 63 O HOH A 502 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 601 O HOH A 601 10444 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 24 -84.55 -87.43 REMARK 500 ASN A 24 -84.22 -87.43 REMARK 500 ASN A 24 -84.85 -87.43 REMARK 500 PHE A 47 122.29 -37.33 REMARK 500 THR A 327 105.46 -58.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 56 10.28 REMARK 500 SER A 56 10.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 84 OD1 REMARK 620 2 FEO A 401 O 115.6 REMARK 620 3 ASP A 84 OD2 50.9 156.4 REMARK 620 4 GLU A 115 OE1 68.1 94.0 96.7 REMARK 620 5 HIS A 118 ND1 140.5 101.4 98.0 97.4 REMARK 620 6 HOH A 573 O 92.4 85.0 77.2 157.9 104.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 115 OE2 REMARK 620 2 FEO A 401 O 100.2 REMARK 620 3 GLU A 204 OE1 79.6 166.8 REMARK 620 4 GLU A 238 OE1 165.1 93.7 85.7 REMARK 620 5 HIS A 241 ND1 89.9 95.3 97.9 94.2 REMARK 620 6 HOH A 562 O 81.3 84.9 82.0 94.7 171.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FEO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CI1 RELATED DB: PDB REMARK 900 RELATED ID: 5CI2 RELATED DB: PDB REMARK 900 RELATED ID: 5CI3 RELATED DB: PDB REMARK 900 RELATED ID: 5CI4 RELATED DB: PDB DBREF1 5CI4 A 1 375 UNP A0A0E1LZC3_ECOLX DBREF2 5CI4 A A0A0E1LZC3 2 376 SEQRES 1 A 375 ALA TYR THR THR PHE SER GLN THR LYS ASN ASP GLN LEU SEQRES 2 A 375 LYS GLU PRO MET PHE PHE GLY GLN PRO VAL ASN VAL ALA SEQRES 3 A 375 ARG TYR ASP GLN GLN LYS TYR ASP ILE PHE GLU LYS LEU SEQRES 4 A 375 ILE GLU LYS GLN LEU SER PHE PHE TRP ARG PRO GLU GLU SEQRES 5 A 375 VAL ASP VAL SER ARG ASP ARG ILE ASP TYR GLN ALA LEU SEQRES 6 A 375 PRO GLU HIS GLU LYS HIS ILE PHE ILE SER ASN LEU LYS SEQRES 7 A 375 TYR GLN THR LEU LEU ASP SER ILE GLN GLY ARG SER PRO SEQRES 8 A 375 ASN VAL ALA LEU LEU PRO LEU ILE SER ILE PRO GLU LEU SEQRES 9 A 375 GLU THR TRP VAL GLU THR TRP ALA PHE SER GLU THR ILE SEQRES 10 A 375 HIS SER ARG SER TYR THR HIS ILE ILE ARG ASN ILE VAL SEQRES 11 A 375 ASN ASP PRO SER VAL VAL PHE ASP ASP ILE VAL THR ASN SEQRES 12 A 375 GLU GLN ILE GLN LYS ARG ALA GLU GLY ILE SER SER TYR SEQRES 13 A 375 TYR ASP GLU LEU ILE GLU MET THR SER TYR TRP HIS LEU SEQRES 14 A 375 LEU GLY GLU GLY THR HIS THR VAL ASN GLY LYS THR VAL SEQRES 15 A 375 THR VAL SER LEU ARG GLU LEU LYS LYS LYS LEU TYR LEU SEQRES 16 A 375 CYS LEU MET SER VAL ASN ALA LEU GLU ALA ILE ARG PHE SEQRES 17 A 375 TYR VAL SER PHE ALA CYS SER PHE ALA PHE ALA GLU ARG SEQRES 18 A 375 GLU LEU MET GLU GLY ASN ALA LYS ILE ILE ARG LEU ILE SEQRES 19 A 375 ALA ARG ASP GLU ALA LEU HIS LEU THR GLY THR GLN HIS SEQRES 20 A 375 MET LEU ASN LEU LEU ARG SER GLY ALA ASP ASP PRO GLU SEQRES 21 A 375 MET ALA GLU ILE ALA GLU GLU CYS LYS GLN GLU CYS TYR SEQRES 22 A 375 ASP LEU PHE VAL GLN ALA ALA GLN GLN GLU LYS ASP TRP SEQRES 23 A 375 ALA ASP TYR LEU PHE ARG ASP GLY SER MET ILE GLY LEU SEQRES 24 A 375 ASN LYS ASP ILE LEU CYS GLN TYR VAL GLU TYR ILE THR SEQRES 25 A 375 ASN ILE ARG MET GLN ALA VAL GLY LEU ASP LEU PRO PHE SEQRES 26 A 375 GLN THR ARG SER ASN PRO ILE PRO TRP ILE ASN THR TRP SEQRES 27 A 375 LEU VAL SER ASP ASN VAL GLN VAL ALA PRO GLN GLU VAL SEQRES 28 A 375 GLU VAL SER SER TYR LEU VAL GLY GLN ILE ASP SER GLU SEQRES 29 A 375 VAL ASP THR ASP ASP LEU SER ASN PHE GLN LEU HET FEO A 401 3 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HETNAM FEO MU-OXO-DIIRON HETNAM SO4 SULFATE ION FORMUL 2 FEO FE2 O FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *211(H2 O) HELIX 1 AA1 TYR A 33 PHE A 47 1 15 HELIX 2 AA2 ARG A 49 VAL A 53 5 5 HELIX 3 AA3 ARG A 57 LEU A 65 1 9 HELIX 4 AA4 PRO A 66 LEU A 96 1 31 HELIX 5 AA5 PRO A 97 ILE A 99 5 3 HELIX 6 AA6 ILE A 101 VAL A 130 1 30 HELIX 7 AA7 ASP A 132 ASN A 143 1 12 HELIX 8 AA8 ASN A 143 GLY A 171 1 29 HELIX 9 AA9 SER A 185 ILE A 206 1 22 HELIX 10 AB1 ILE A 206 ARG A 221 1 16 HELIX 11 AB2 MET A 224 GLY A 255 1 32 HELIX 12 AB3 ASP A 258 CYS A 268 1 11 HELIX 13 AB4 CYS A 268 PHE A 291 1 24 HELIX 14 AB5 ASN A 300 VAL A 319 1 20 HELIX 15 AB6 ILE A 332 TRP A 338 5 7 SHEET 1 AA1 2 GLY A 173 VAL A 177 0 SHEET 2 AA1 2 LYS A 180 VAL A 184 -1 O VAL A 184 N GLY A 173 LINK OD1 ASP A 84 FE2 FEO A 401 1555 1555 2.77 LINK OD2 ASP A 84 FE2 FEO A 401 1555 1555 2.01 LINK OE1 GLU A 115 FE2 FEO A 401 1555 1555 2.04 LINK OE2 GLU A 115 FE1 FEO A 401 1555 1555 2.19 LINK ND1 HIS A 118 FE2 FEO A 401 1555 1555 2.16 LINK OE1 GLU A 204 FE1 FEO A 401 1555 1555 1.99 LINK OE1 GLU A 238 FE1 FEO A 401 1555 1555 2.10 LINK ND1 HIS A 241 FE1 FEO A 401 1555 1555 2.16 LINK FE1 FEO A 401 O HOH A 562 1555 1555 2.09 LINK FE2 FEO A 401 O HOH A 573 1555 1555 2.29 SITE 1 AC1 8 ASP A 84 GLU A 115 HIS A 118 GLU A 204 SITE 2 AC1 8 GLU A 238 HIS A 241 HOH A 562 HOH A 573 SITE 1 AC2 7 PRO A 66 GLU A 67 SER A 295 ASN A 300 SITE 2 AC2 7 HOH A 529 HOH A 553 HOH A 592 SITE 1 AC3 5 GLN A 145 LYS A 148 ARG A 149 ASP A 285 SITE 2 AC3 5 HOH A 513 SITE 1 AC4 3 ARG A 236 SER A 341 ASN A 343 CRYST1 91.508 91.508 205.179 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010928 0.006309 0.000000 0.00000 SCALE2 0.000000 0.012619 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004874 0.00000