HEADER TRANSFERASE/TRANSFERASE INHIBITOR 11-JUL-15 5CI7 TITLE STRUCTURE OF ULK1 BOUND TO A SELECTIVE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE ULK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN (UNP RESIDUES 1-283); COMPND 5 SYNONYM: AUTOPHAGY-RELATED PROTEIN 1 HOMOLOG,HATG1,UNC-51-LIKE KINASE COMPND 6 1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ULK1, KIAA0722; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, KINASE, AUTOPHAGY, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.B.LAZARUS,K.M.SHOKAT REVDAT 5 27-SEP-23 5CI7 1 REMARK REVDAT 4 11-DEC-19 5CI7 1 REMARK REVDAT 3 27-SEP-17 5CI7 1 JRNL REMARK REVDAT 2 09-SEP-15 5CI7 1 JRNL REVDAT 1 26-AUG-15 5CI7 0 JRNL AUTH M.B.LAZARUS,K.M.SHOKAT JRNL TITL DISCOVERY AND STRUCTURE OF A NEW INHIBITOR SCAFFOLD OF THE JRNL TITL 2 AUTOPHAGY INITIATING KINASE ULK1. JRNL REF BIOORG.MED.CHEM. V. 23 5483 2015 JRNL REFN ESSN 1464-3391 JRNL PMID 26275681 JRNL DOI 10.1016/J.BMC.2015.07.034 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 26552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8270 - 3.7480 0.87 2509 114 0.1721 0.1944 REMARK 3 2 3.7480 - 2.9751 0.93 2514 150 0.1607 0.2099 REMARK 3 3 2.9751 - 2.5991 0.96 2551 133 0.1652 0.2089 REMARK 3 4 2.5991 - 2.3615 0.97 2541 147 0.1581 0.1991 REMARK 3 5 2.3615 - 2.1922 0.98 2543 163 0.1503 0.1783 REMARK 3 6 2.1922 - 2.0630 0.98 2554 127 0.1489 0.2066 REMARK 3 7 2.0630 - 1.9597 0.98 2550 134 0.1601 0.2152 REMARK 3 8 1.9597 - 1.8743 0.97 2507 156 0.1850 0.2293 REMARK 3 9 1.8743 - 1.8022 0.97 2516 134 0.2236 0.2519 REMARK 3 10 1.8022 - 1.7400 0.92 2392 117 0.2476 0.2562 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2361 REMARK 3 ANGLE : 1.094 3184 REMARK 3 CHIRALITY : 0.062 343 REMARK 3 PLANARITY : 0.004 408 REMARK 3 DIHEDRAL : 14.316 904 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 3:24) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9525 -49.4154 -6.8656 REMARK 3 T TENSOR REMARK 3 T11: 0.1645 T22: 0.1970 REMARK 3 T33: 0.1893 T12: -0.0034 REMARK 3 T13: -0.0202 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 2.4331 L22: 3.5659 REMARK 3 L33: 1.6612 L12: -0.8290 REMARK 3 L13: -1.0272 L23: -0.6347 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: -0.4328 S13: -0.2232 REMARK 3 S21: 0.2814 S22: -0.1072 S23: -0.5505 REMARK 3 S31: 0.0864 S32: 0.4202 S33: 0.0374 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 25:49) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3750 -47.1240 -10.0678 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: 0.1467 REMARK 3 T33: 0.1146 T12: 0.0451 REMARK 3 T13: 0.0253 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 2.2278 L22: 4.2659 REMARK 3 L33: 2.0475 L12: 0.8318 REMARK 3 L13: 0.2685 L23: 0.8196 REMARK 3 S TENSOR REMARK 3 S11: 0.0480 S12: -0.0168 S13: -0.1181 REMARK 3 S21: 0.0857 S22: 0.0041 S23: -0.3356 REMARK 3 S31: 0.3430 S32: 0.3582 S33: -0.1021 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 50:75) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1333 -39.3531 -6.6477 REMARK 3 T TENSOR REMARK 3 T11: 0.1151 T22: 0.0722 REMARK 3 T33: 0.1205 T12: 0.0000 REMARK 3 T13: 0.0423 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 2.0246 L22: 1.6809 REMARK 3 L33: 5.4662 L12: 0.2118 REMARK 3 L13: 0.6271 L23: 0.6587 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: -0.2958 S13: -0.0233 REMARK 3 S21: 0.1457 S22: -0.1206 S23: 0.0455 REMARK 3 S31: 0.1560 S32: -0.2412 S33: 0.0656 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 76:103) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3058 -43.2292 -11.7028 REMARK 3 T TENSOR REMARK 3 T11: 0.0975 T22: 0.0950 REMARK 3 T33: 0.1003 T12: 0.0165 REMARK 3 T13: 0.0184 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.3869 L22: 1.4016 REMARK 3 L33: 2.3846 L12: 1.3944 REMARK 3 L13: -1.6915 L23: -1.7032 REMARK 3 S TENSOR REMARK 3 S11: 0.0692 S12: -0.0688 S13: 0.0033 REMARK 3 S21: 0.0774 S22: -0.0560 S23: -0.0365 REMARK 3 S31: -0.0008 S32: 0.1081 S33: -0.0135 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 104:108) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4152 -26.4624 -27.1174 REMARK 3 T TENSOR REMARK 3 T11: 0.0795 T22: 0.2413 REMARK 3 T33: 0.1783 T12: 0.0035 REMARK 3 T13: 0.0021 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 4.3888 L22: 2.3248 REMARK 3 L33: 5.9719 L12: -1.7713 REMARK 3 L13: -3.0363 L23: -1.2710 REMARK 3 S TENSOR REMARK 3 S11: 0.2718 S12: 0.4846 S13: 0.4513 REMARK 3 S21: -0.0366 S22: -0.1872 S23: 0.1313 REMARK 3 S31: -0.1140 S32: 0.7837 S33: -0.0932 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 109:147) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9832 -31.2366 -22.2328 REMARK 3 T TENSOR REMARK 3 T11: 0.1043 T22: 0.0433 REMARK 3 T33: 0.1065 T12: -0.0017 REMARK 3 T13: 0.0213 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.4729 L22: 0.5071 REMARK 3 L33: 2.8882 L12: -0.0521 REMARK 3 L13: -1.2057 L23: 0.2075 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: 0.0552 S13: 0.0177 REMARK 3 S21: -0.0849 S22: -0.0107 S23: -0.0275 REMARK 3 S31: 0.0604 S32: -0.0340 S33: -0.0459 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 148:157) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2383 -42.6005 -33.4828 REMARK 3 T TENSOR REMARK 3 T11: 0.3250 T22: 0.5668 REMARK 3 T33: 0.3526 T12: -0.0047 REMARK 3 T13: 0.1013 T23: 0.0556 REMARK 3 L TENSOR REMARK 3 L11: 1.1036 L22: 4.0625 REMARK 3 L33: 0.5695 L12: 0.8806 REMARK 3 L13: 0.0322 L23: 1.4079 REMARK 3 S TENSOR REMARK 3 S11: 0.4814 S12: 1.3209 S13: 0.3174 REMARK 3 S21: -0.9991 S22: -0.3330 S23: -1.0930 REMARK 3 S31: -0.5215 S32: 1.0956 S33: 0.0721 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 158:166) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3607 -37.3479 -21.4085 REMARK 3 T TENSOR REMARK 3 T11: 0.1169 T22: 0.0455 REMARK 3 T33: 0.0966 T12: 0.0085 REMARK 3 T13: 0.0184 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.8215 L22: 2.7916 REMARK 3 L33: 7.6512 L12: -0.6355 REMARK 3 L13: -0.9614 L23: 2.5453 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: 0.1018 S13: -0.0419 REMARK 3 S21: -0.0796 S22: -0.0867 S23: 0.0530 REMARK 3 S31: 0.1796 S32: 0.1644 S33: 0.1382 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 167:217) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0976 -22.6573 -11.8413 REMARK 3 T TENSOR REMARK 3 T11: 0.0965 T22: 0.0790 REMARK 3 T33: 0.0939 T12: -0.0163 REMARK 3 T13: 0.0026 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.3528 L22: 1.0336 REMARK 3 L33: 1.7811 L12: 0.4688 REMARK 3 L13: -1.1103 L23: -0.7639 REMARK 3 S TENSOR REMARK 3 S11: 0.1096 S12: -0.0950 S13: 0.0862 REMARK 3 S21: 0.0556 S22: -0.1095 S23: -0.0530 REMARK 3 S31: -0.1776 S32: 0.0672 S33: 0.0046 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 218:223) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2304 -14.2955 -18.3616 REMARK 3 T TENSOR REMARK 3 T11: 0.1810 T22: 0.4188 REMARK 3 T33: 0.3999 T12: -0.0477 REMARK 3 T13: 0.0587 T23: -0.1025 REMARK 3 L TENSOR REMARK 3 L11: 1.5904 L22: 5.9210 REMARK 3 L33: 2.3600 L12: -2.2447 REMARK 3 L13: 1.7893 L23: -3.5028 REMARK 3 S TENSOR REMARK 3 S11: 0.3296 S12: -0.5158 S13: 1.0110 REMARK 3 S21: -0.2161 S22: 0.1360 S23: -0.8958 REMARK 3 S31: -0.7390 S32: 1.3409 S33: -0.3740 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 224:237) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3209 -9.0640 -9.2282 REMARK 3 T TENSOR REMARK 3 T11: 0.3310 T22: 0.2319 REMARK 3 T33: 0.4550 T12: -0.1071 REMARK 3 T13: 0.0362 T23: -0.1220 REMARK 3 L TENSOR REMARK 3 L11: 1.7111 L22: 4.4895 REMARK 3 L33: 3.0440 L12: -1.6236 REMARK 3 L13: -0.7714 L23: -2.0878 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: -0.5069 S13: 0.5869 REMARK 3 S21: 0.8770 S22: -0.3725 S23: 0.0490 REMARK 3 S31: -0.4848 S32: -0.0486 S33: -0.0114 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 238:279) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7265 -17.8301 -26.5268 REMARK 3 T TENSOR REMARK 3 T11: 0.0866 T22: 0.0831 REMARK 3 T33: 0.1195 T12: 0.0390 REMARK 3 T13: -0.0020 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 3.1036 L22: 2.4485 REMARK 3 L33: 4.9462 L12: 1.0699 REMARK 3 L13: -1.2543 L23: -1.1211 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.0622 S13: 0.1319 REMARK 3 S21: -0.0553 S22: -0.0116 S23: 0.0917 REMARK 3 S31: 0.0051 S32: -0.2423 S33: 0.0353 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CI7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211655. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99997 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26564 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 47.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WNO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.55 M SODIUM MALONATE PH 7.0, 0.35 M REMARK 280 SODIUM MALONATE PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.43000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.30500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.43000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.30500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.43000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.43000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.30500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.43000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.43000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.30500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 574 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 651 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 280 REMARK 465 SER A 281 REMARK 465 PRO A 282 REMARK 465 SER A 283 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 526 O HOH A 631 2.02 REMARK 500 O HOH A 588 O HOH A 656 2.05 REMARK 500 O HOH A 532 O HOH A 604 2.06 REMARK 500 O HOH A 567 O HOH A 644 2.12 REMARK 500 O HOH A 595 O HOH A 636 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 543 O HOH A 647 8445 2.01 REMARK 500 O HOH A 622 O HOH A 622 2445 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 109 164.68 73.76 REMARK 500 ARG A 137 -11.80 79.26 REMARK 500 ASP A 199 -154.22 -139.03 REMARK 500 LEU A 259 45.86 -95.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 51W A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WNO RELATED DB: PDB REMARK 900 SAME CONSTRUCT WITH A DIFFERENT INHIBITOR BOUND DBREF 5CI7 A 1 283 UNP O75385 ULK1_HUMAN 1 283 SEQADV 5CI7 GLY A -3 UNP O75385 EXPRESSION TAG SEQADV 5CI7 GLY A -2 UNP O75385 EXPRESSION TAG SEQADV 5CI7 GLY A -1 UNP O75385 EXPRESSION TAG SEQADV 5CI7 SER A 0 UNP O75385 EXPRESSION TAG SEQADV 5CI7 ALA A 37 UNP O75385 GLU 37 ENGINEERED MUTATION SEQADV 5CI7 ALA A 38 UNP O75385 LYS 38 ENGINEERED MUTATION SEQRES 1 A 287 GLY GLY GLY SER MET GLU PRO GLY ARG GLY GLY THR GLU SEQRES 2 A 287 THR VAL GLY LYS PHE GLU PHE SER ARG LYS ASP LEU ILE SEQRES 3 A 287 GLY HIS GLY ALA PHE ALA VAL VAL PHE LYS GLY ARG HIS SEQRES 4 A 287 ARG ALA ALA HIS ASP LEU GLU VAL ALA VAL LYS CYS ILE SEQRES 5 A 287 ASN LYS LYS ASN LEU ALA LYS SER GLN THR LEU LEU GLY SEQRES 6 A 287 LYS GLU ILE LYS ILE LEU LYS GLU LEU LYS HIS GLU ASN SEQRES 7 A 287 ILE VAL ALA LEU TYR ASP PHE GLN GLU MET ALA ASN SER SEQRES 8 A 287 VAL TYR LEU VAL MET GLU TYR CYS ASN GLY GLY ASP LEU SEQRES 9 A 287 ALA ASP TYR LEU HIS ALA MET ARG THR LEU SER GLU ASP SEQRES 10 A 287 THR ILE ARG LEU PHE LEU GLN GLN ILE ALA GLY ALA MET SEQRES 11 A 287 ARG LEU LEU HIS SER LYS GLY ILE ILE HIS ARG ASP LEU SEQRES 12 A 287 LYS PRO GLN ASN ILE LEU LEU SER ASN PRO ALA GLY ARG SEQRES 13 A 287 ARG ALA ASN PRO ASN SER ILE ARG VAL LYS ILE ALA ASP SEQRES 14 A 287 PHE GLY PHE ALA ARG TYR LEU GLN SER ASN MET MET ALA SEQRES 15 A 287 ALA TPO LEU CYS GLY SER PRO MET TYR MET ALA PRO GLU SEQRES 16 A 287 VAL ILE MET SER GLN HIS TYR ASP GLY LYS ALA ASP LEU SEQRES 17 A 287 TRP SER ILE GLY THR ILE VAL TYR GLN CYS LEU THR GLY SEQRES 18 A 287 LYS ALA PRO PHE GLN ALA SER SER PRO GLN ASP LEU ARG SEQRES 19 A 287 LEU PHE TYR GLU LYS ASN LYS THR LEU VAL PRO THR ILE SEQRES 20 A 287 PRO ARG GLU THR SER ALA PRO LEU ARG GLN LEU LEU LEU SEQRES 21 A 287 ALA LEU LEU GLN ARG ASN HIS LYS ASP ARG MET ASP PHE SEQRES 22 A 287 ASP GLU PHE PHE HIS HIS PRO PHE LEU ASP ALA SER PRO SEQRES 23 A 287 SER MODRES 5CI7 TPO A 180 THR MODIFIED RESIDUE HET TPO A 180 17 HET 51W A 401 51 HET GOL A 402 14 HET GOL A 403 14 HET GOL A 404 14 HETNAM TPO PHOSPHOTHREONINE HETNAM 51W N-[3-({4-[(3-AMINOPROPYL)AMINO]-5-IODOPYRIMIDIN-2- HETNAM 2 51W YL}AMINO)PHENYL]PYRROLIDINE-1-CARBOXAMIDE HETNAM GOL GLYCEROL HETSYN TPO PHOSPHONOTHREONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 51W C18 H24 I N7 O FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *156(H2 O) HELIX 1 AA1 ASN A 49 LYS A 51 5 3 HELIX 2 AA2 ASN A 52 LYS A 68 1 17 HELIX 3 AA3 ASP A 99 MET A 107 1 9 HELIX 4 AA4 SER A 111 GLY A 133 1 23 HELIX 5 AA5 LYS A 140 GLN A 142 5 3 HELIX 6 AA6 ASN A 155 ILE A 159 5 5 HELIX 7 AA7 ALA A 189 MET A 194 1 6 HELIX 8 AA8 GLY A 200 GLY A 217 1 18 HELIX 9 AA9 SER A 225 ASN A 236 1 12 HELIX 10 AB1 SER A 248 LEU A 259 1 12 HELIX 11 AB2 ASP A 268 HIS A 274 1 7 HELIX 12 AB3 HIS A 275 ASP A 279 5 5 SHEET 1 AA1 6 GLU A 9 VAL A 11 0 SHEET 2 AA1 6 PHE A 14 GLY A 25 -1 O PHE A 16 N GLU A 9 SHEET 3 AA1 6 ALA A 28 HIS A 35 -1 O VAL A 30 N ILE A 22 SHEET 4 AA1 6 GLU A 42 CYS A 47 -1 O CYS A 47 N VAL A 29 SHEET 5 AA1 6 VAL A 88 GLU A 93 -1 O MET A 92 N ALA A 44 SHEET 6 AA1 6 LEU A 78 GLU A 83 -1 N ASP A 80 O VAL A 91 SHEET 1 AA2 2 ILE A 134 ILE A 135 0 SHEET 2 AA2 2 ARG A 170 TYR A 171 -1 O ARG A 170 N ILE A 135 SHEET 1 AA3 2 ILE A 144 SER A 147 0 SHEET 2 AA3 2 ARG A 160 ILE A 163 -1 O LYS A 162 N LEU A 145 LINK C ALA A 179 N TPO A 180 1555 1555 1.33 LINK C TPO A 180 N LEU A 181 1555 1555 1.33 SITE 1 AC1 12 ILE A 22 ALA A 44 MET A 92 GLU A 93 SITE 2 AC1 12 TYR A 94 CYS A 95 GLY A 98 ASP A 99 SITE 3 AC1 12 HIS A 105 GLN A 142 LEU A 145 HOH A 522 SITE 1 AC2 10 GLU A 73 GLU A 93 PRO A 149 ARG A 160 SITE 2 AC2 10 LYS A 162 ALA A 249 GLN A 253 GOL A 403 SITE 3 AC2 10 HOH A 512 HOH A 530 SITE 1 AC3 9 LEU A 41 GLU A 93 TYR A 94 ALA A 249 SITE 2 AC3 9 GOL A 402 HOH A 508 HOH A 511 HOH A 513 SITE 3 AC3 9 HOH A 569 SITE 1 AC4 3 GLY A 23 ASP A 165 HOH A 523 CRYST1 66.860 66.860 116.610 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014957 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008576 0.00000