HEADER HYDROLASE 13-JUL-15 5CIT TITLE RAN GDP WILD TYPE MONOCLINIC CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING NUCLEAR PROTEIN RAN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ANDROGEN RECEPTOR-ASSOCIATED PROTEIN 24,GTPASE RAN,RAS-LIKE COMPND 5 PROTEIN TC4,RAS-RELATED NUCLEAR PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAN, ARA24, OK/SW-CL.81; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3D KEYWDS GTPASE, NUCLEAR TRANSPORT, TRANSPORT PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.R.VETTER,S.BRUCKER REVDAT 3 01-MAY-24 5CIT 1 LINK REVDAT 2 14-OCT-15 5CIT 1 JRNL REVDAT 1 09-SEP-15 5CIT 0 JRNL AUTH T.RUDACK,S.JENRICH,S.BRUCKER,I.R.VETTER,K.GERWERT,C.KOTTING JRNL TITL CATALYSIS OF GTP HYDROLYSIS BY SMALL GTPASES AT ATOMIC JRNL TITL 2 DETAIL BY INTEGRATION OF X-RAY CRYSTALLOGRAPHY, JRNL TITL 3 EXPERIMENTAL, AND THEORETICAL IR SPECTROSCOPY. JRNL REF J.BIOL.CHEM. V. 290 24079 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26272610 JRNL DOI 10.1074/JBC.M115.648071 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 40326 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2123 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2936 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3184 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.433 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3324 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4516 ; 2.238 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 6.616 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;34.492 ;23.907 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 565 ;19.048 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.788 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 493 ; 0.197 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2492 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1582 ; 3.757 ; 3.568 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1974 ; 4.955 ; 5.335 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1742 ; 4.583 ; 3.902 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5160 ; 8.306 ;30.698 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5CIT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9840 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42451 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 19.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.290 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.35 REMARK 200 R MERGE FOR SHELL (I) : 0.64100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: HUMAN RAN GDP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32 % PEG 1000, 50 MM HEPES PH 7.2, 20 REMARK 280 MM MGCL2, 1MM BEF, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.61500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 7 REMARK 465 THR A 207 REMARK 465 ALA A 208 REMARK 465 LEU A 209 REMARK 465 PRO A 210 REMARK 465 ASP A 211 REMARK 465 GLU A 212 REMARK 465 ASP A 213 REMARK 465 ASP A 214 REMARK 465 ASP A 215 REMARK 465 LEU A 216 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 GLN B 4 REMARK 465 GLY B 5 REMARK 465 GLU B 6 REMARK 465 PRO B 7 REMARK 465 GLN B 205 REMARK 465 THR B 206 REMARK 465 THR B 207 REMARK 465 ALA B 208 REMARK 465 LEU B 209 REMARK 465 PRO B 210 REMARK 465 ASP B 211 REMARK 465 GLU B 212 REMARK 465 ASP B 213 REMARK 465 ASP B 214 REMARK 465 ASP B 215 REMARK 465 LEU B 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 65 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 VAL A 92 CG1 - CB - CG2 ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 129 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 148 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 MET A 189 CG - SD - CE ANGL. DEV. = 10.2 DEGREES REMARK 500 VAL B 27 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 VAL B 27 CG1 - CB - CG2 ANGL. DEV. = 12.4 DEGREES REMARK 500 LEU B 144 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 113 -130.75 73.84 REMARK 500 ASN A 114 51.40 -106.63 REMARK 500 LYS A 123 33.03 73.41 REMARK 500 ASP A 171 117.55 -169.23 REMARK 500 GLU B 113 -128.55 54.58 REMARK 500 ASN B 114 32.60 -87.68 REMARK 500 ALA B 133 -48.28 -27.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 24 OG1 REMARK 620 2 GDP A 301 O2B 92.0 REMARK 620 3 HOH A 407 O 177.9 89.4 REMARK 620 4 HOH A 410 O 86.1 87.2 95.5 REMARK 620 5 HOH A 411 O 89.3 173.7 89.4 86.8 REMARK 620 6 HOH A 413 O 90.2 94.7 88.2 175.9 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 24 OG1 REMARK 620 2 GDP B 301 O2B 91.5 REMARK 620 3 HOH B 409 O 176.0 89.7 REMARK 620 4 HOH B 411 O 86.3 96.4 89.8 REMARK 620 5 HOH B 424 O 87.8 171.5 91.6 92.1 REMARK 620 6 HOH B 427 O 93.0 85.3 90.9 178.1 86.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CIQ RELATED DB: PDB REMARK 900 5CIQ CONTAINS RAN WILD TYPE IN A TETRAGONAL CRYSTAL FORM DBREF 5CIT A 1 216 UNP P62826 RAN_HUMAN 1 216 DBREF 5CIT B 1 216 UNP P62826 RAN_HUMAN 1 216 SEQRES 1 A 216 MET ALA ALA GLN GLY GLU PRO GLN VAL GLN PHE LYS LEU SEQRES 2 A 216 VAL LEU VAL GLY ASP GLY GLY THR GLY LYS THR THR PHE SEQRES 3 A 216 VAL LYS ARG HIS LEU THR GLY GLU PHE GLU LYS LYS TYR SEQRES 4 A 216 VAL ALA THR LEU GLY VAL GLU VAL HIS PRO LEU VAL PHE SEQRES 5 A 216 HIS THR ASN ARG GLY PRO ILE LYS PHE ASN VAL TRP ASP SEQRES 6 A 216 THR ALA GLY GLN GLU LYS PHE GLY GLY LEU ARG ASP GLY SEQRES 7 A 216 TYR TYR ILE GLN ALA GLN CYS ALA ILE ILE MET PHE ASP SEQRES 8 A 216 VAL THR SER ARG VAL THR TYR LYS ASN VAL PRO ASN TRP SEQRES 9 A 216 HIS ARG ASP LEU VAL ARG VAL CYS GLU ASN ILE PRO ILE SEQRES 10 A 216 VAL LEU CYS GLY ASN LYS VAL ASP ILE LYS ASP ARG LYS SEQRES 11 A 216 VAL LYS ALA LYS SER ILE VAL PHE HIS ARG LYS LYS ASN SEQRES 12 A 216 LEU GLN TYR TYR ASP ILE SER ALA LYS SER ASN TYR ASN SEQRES 13 A 216 PHE GLU LYS PRO PHE LEU TRP LEU ALA ARG LYS LEU ILE SEQRES 14 A 216 GLY ASP PRO ASN LEU GLU PHE VAL ALA MET PRO ALA LEU SEQRES 15 A 216 ALA PRO PRO GLU VAL VAL MET ASP PRO ALA LEU ALA ALA SEQRES 16 A 216 GLN TYR GLU HIS ASP LEU GLU VAL ALA GLN THR THR ALA SEQRES 17 A 216 LEU PRO ASP GLU ASP ASP ASP LEU SEQRES 1 B 216 MET ALA ALA GLN GLY GLU PRO GLN VAL GLN PHE LYS LEU SEQRES 2 B 216 VAL LEU VAL GLY ASP GLY GLY THR GLY LYS THR THR PHE SEQRES 3 B 216 VAL LYS ARG HIS LEU THR GLY GLU PHE GLU LYS LYS TYR SEQRES 4 B 216 VAL ALA THR LEU GLY VAL GLU VAL HIS PRO LEU VAL PHE SEQRES 5 B 216 HIS THR ASN ARG GLY PRO ILE LYS PHE ASN VAL TRP ASP SEQRES 6 B 216 THR ALA GLY GLN GLU LYS PHE GLY GLY LEU ARG ASP GLY SEQRES 7 B 216 TYR TYR ILE GLN ALA GLN CYS ALA ILE ILE MET PHE ASP SEQRES 8 B 216 VAL THR SER ARG VAL THR TYR LYS ASN VAL PRO ASN TRP SEQRES 9 B 216 HIS ARG ASP LEU VAL ARG VAL CYS GLU ASN ILE PRO ILE SEQRES 10 B 216 VAL LEU CYS GLY ASN LYS VAL ASP ILE LYS ASP ARG LYS SEQRES 11 B 216 VAL LYS ALA LYS SER ILE VAL PHE HIS ARG LYS LYS ASN SEQRES 12 B 216 LEU GLN TYR TYR ASP ILE SER ALA LYS SER ASN TYR ASN SEQRES 13 B 216 PHE GLU LYS PRO PHE LEU TRP LEU ALA ARG LYS LEU ILE SEQRES 14 B 216 GLY ASP PRO ASN LEU GLU PHE VAL ALA MET PRO ALA LEU SEQRES 15 B 216 ALA PRO PRO GLU VAL VAL MET ASP PRO ALA LEU ALA ALA SEQRES 16 B 216 GLN TYR GLU HIS ASP LEU GLU VAL ALA GLN THR THR ALA SEQRES 17 B 216 LEU PRO ASP GLU ASP ASP ASP LEU HET GDP A 301 28 HET MG A 302 1 HET GDP B 301 28 HET MG B 302 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *86(H2 O) HELIX 1 AA1 GLY A 22 LYS A 28 1 7 HELIX 2 AA2 HIS A 30 GLU A 36 1 7 HELIX 3 AA3 GLY A 68 PHE A 72 5 5 HELIX 4 AA4 SER A 94 GLU A 113 1 20 HELIX 5 AA5 LYS A 132 ILE A 136 5 5 HELIX 6 AA6 VAL A 137 LYS A 142 1 6 HELIX 7 AA7 SER A 150 ASN A 154 5 5 HELIX 8 AA8 GLU A 158 GLY A 170 1 13 HELIX 9 AA9 ASP A 190 GLN A 205 1 16 HELIX 10 AB1 GLY B 22 LYS B 28 1 7 HELIX 11 AB2 HIS B 30 GLU B 36 1 7 HELIX 12 AB3 GLY B 68 PHE B 72 5 5 HELIX 13 AB4 ARG B 76 ILE B 81 1 6 HELIX 14 AB5 SER B 94 ASN B 100 1 7 HELIX 15 AB6 ASN B 100 GLU B 113 1 14 HELIX 16 AB7 LYS B 132 ILE B 136 5 5 HELIX 17 AB8 SER B 150 ASN B 154 5 5 HELIX 18 AB9 GLU B 158 GLY B 170 1 13 HELIX 19 AC1 ASP B 190 VAL B 203 1 14 SHEET 1 AA1 7 LYS A 38 VAL A 40 0 SHEET 2 AA1 7 VAL A 45 THR A 54 -1 O VAL A 47 N LYS A 38 SHEET 3 AA1 7 GLY A 57 THR A 66 -1 O PHE A 61 N LEU A 50 SHEET 4 AA1 7 GLN A 10 GLY A 17 1 N PHE A 11 O ASN A 62 SHEET 5 AA1 7 CYS A 85 ASP A 91 1 O MET A 89 N VAL A 16 SHEET 6 AA1 7 ILE A 117 ASN A 122 1 O ASN A 122 N PHE A 90 SHEET 7 AA1 7 GLN A 145 ASP A 148 1 O GLN A 145 N LEU A 119 SHEET 1 AA2 3 LYS A 38 VAL A 40 0 SHEET 2 AA2 3 VAL A 45 THR A 54 -1 O VAL A 47 N LYS A 38 SHEET 3 AA2 3 PHE A 176 ALA A 178 -1 O VAL A 177 N HIS A 53 SHEET 1 AA3 7 LYS B 38 VAL B 40 0 SHEET 2 AA3 7 VAL B 45 THR B 54 -1 O VAL B 47 N LYS B 38 SHEET 3 AA3 7 GLY B 57 THR B 66 -1 O VAL B 63 N HIS B 48 SHEET 4 AA3 7 GLN B 10 VAL B 16 1 N LEU B 13 O TRP B 64 SHEET 5 AA3 7 CYS B 85 ASP B 91 1 O ILE B 87 N VAL B 16 SHEET 6 AA3 7 ILE B 117 ASN B 122 1 O ASN B 122 N PHE B 90 SHEET 7 AA3 7 LEU B 144 ASP B 148 1 O GLN B 145 N LEU B 119 SHEET 1 AA4 3 LYS B 38 VAL B 40 0 SHEET 2 AA4 3 VAL B 45 THR B 54 -1 O VAL B 47 N LYS B 38 SHEET 3 AA4 3 PHE B 176 ALA B 178 -1 O VAL B 177 N HIS B 53 LINK OG1 THR A 24 MG MG A 302 1555 1555 2.08 LINK O2B GDP A 301 MG MG A 302 1555 1555 1.91 LINK MG MG A 302 O HOH A 407 1555 1555 2.15 LINK MG MG A 302 O HOH A 410 1555 1555 1.96 LINK MG MG A 302 O HOH A 411 1555 1555 2.20 LINK MG MG A 302 O HOH A 413 1555 1555 1.75 LINK OG1 THR B 24 MG MG B 302 1555 1555 2.09 LINK O2B GDP B 301 MG MG B 302 1555 1555 2.12 LINK MG MG B 302 O HOH B 409 1555 1555 2.06 LINK MG MG B 302 O HOH B 411 1555 1555 2.12 LINK MG MG B 302 O HOH B 424 1555 1555 2.09 LINK MG MG B 302 O HOH B 427 1555 1555 2.06 SITE 1 AC1 20 GLY A 19 GLY A 20 THR A 21 GLY A 22 SITE 2 AC1 20 LYS A 23 THR A 24 THR A 25 LYS A 71 SITE 3 AC1 20 ASN A 122 LYS A 123 ASP A 125 ILE A 126 SITE 4 AC1 20 SER A 150 ALA A 151 LYS A 152 MG A 302 SITE 5 AC1 20 HOH A 403 HOH A 407 HOH A 410 HOH A 413 SITE 1 AC2 6 THR A 24 GDP A 301 HOH A 407 HOH A 410 SITE 2 AC2 6 HOH A 411 HOH A 413 SITE 1 AC3 19 ASP B 18 GLY B 19 GLY B 20 THR B 21 SITE 2 AC3 19 GLY B 22 LYS B 23 THR B 24 THR B 25 SITE 3 AC3 19 ASN B 122 LYS B 123 ASP B 125 ILE B 126 SITE 4 AC3 19 SER B 150 ALA B 151 LYS B 152 MG B 302 SITE 5 AC3 19 HOH B 409 HOH B 427 HOH B 428 SITE 1 AC4 6 THR B 24 GDP B 301 HOH B 409 HOH B 411 SITE 2 AC4 6 HOH B 424 HOH B 427 CRYST1 58.010 59.230 64.770 90.00 96.95 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017238 0.000000 0.002103 0.00000 SCALE2 0.000000 0.016883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015554 0.00000