HEADER TRANSCRIPTION 13-JUL-15 5CIW TITLE RAN GDP Y39A MUTANT MONOCLINIC CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING NUCLEAR PROTEIN RAN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ANDROGEN RECEPTOR-ASSOCIATED PROTEIN 24,GTPASE RAN,RAS-LIKE COMPND 5 PROTEIN TC4,RAS-RELATED NUCLEAR PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAN, ARA24, OK/SW-CL.81; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3D KEYWDS GTPASE NUCLEAR TRANSPORT TRANSPORT PROTEIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR I.R.VETTER,S.BRUCKER REVDAT 3 01-MAY-24 5CIW 1 LINK REVDAT 2 14-OCT-15 5CIW 1 JRNL REVDAT 1 09-SEP-15 5CIW 0 JRNL AUTH T.RUDACK,S.JENRICH,S.BRUCKER,I.R.VETTER,K.GERWERT,C.KOTTING JRNL TITL CATALYSIS OF GTP HYDROLYSIS BY SMALL GTPASES AT ATOMIC JRNL TITL 2 DETAIL BY INTEGRATION OF X-RAY CRYSTALLOGRAPHY, JRNL TITL 3 EXPERIMENTAL, AND THEORETICAL IR SPECTROSCOPY. JRNL REF J.BIOL.CHEM. V. 290 24079 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26272610 JRNL DOI 10.1074/JBC.M115.648071 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 39744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2092 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2447 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3182 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.660 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3334 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4532 ; 2.164 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 400 ; 6.768 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;32.889 ;23.919 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 572 ;17.736 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;13.627 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 500 ; 0.175 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2488 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1594 ; 3.049 ; 2.876 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1990 ; 4.057 ; 4.291 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1740 ; 4.137 ; 3.161 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5129 ; 7.130 ;24.274 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5CIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211698. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9840 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41838 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 19.891 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 3.640 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.02 REMARK 200 R MERGE FOR SHELL (I) : 0.27500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: HUMAN RAN GDP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 34 % PEG 1000, 50 MM HEPES PH 7.2, 20 REMARK 280 MM MGCL2, 1 MM BEF, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.66500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 465 ALA A 208 REMARK 465 LEU A 209 REMARK 465 PRO A 210 REMARK 465 ASP A 211 REMARK 465 GLU A 212 REMARK 465 ASP A 213 REMARK 465 ASP A 214 REMARK 465 ASP A 215 REMARK 465 LEU A 216 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 GLN B 4 REMARK 465 GLY B 5 REMARK 465 GLU B 6 REMARK 465 PRO B 7 REMARK 465 GLN B 8 REMARK 465 ALA B 208 REMARK 465 LEU B 209 REMARK 465 PRO B 210 REMARK 465 ASP B 211 REMARK 465 GLU B 212 REMARK 465 ASP B 213 REMARK 465 ASP B 214 REMARK 465 ASP B 215 REMARK 465 LEU B 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 148 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 148 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 LEU B 50 CB - CG - CD2 ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG B 129 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP B 148 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 148 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 41 -70.02 -32.64 REMARK 500 GLU B 113 -110.79 -107.30 REMARK 500 ASN B 114 44.80 -92.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 9 GLN A 10 -141.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 24 OG1 REMARK 620 2 GDP A 301 O2B 92.0 REMARK 620 3 HOH A 416 O 173.5 91.1 REMARK 620 4 HOH A 424 O 84.5 95.0 89.6 REMARK 620 5 HOH A 434 O 85.3 176.8 91.7 86.5 REMARK 620 6 HOH A 443 O 92.7 92.6 92.8 172.0 85.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 24 OG1 REMARK 620 2 GDP B 302 O2B 93.5 REMARK 620 3 HOH B 406 O 92.4 84.0 REMARK 620 4 HOH B 409 O 174.7 91.7 86.8 REMARK 620 5 HOH B 415 O 87.2 171.3 87.4 87.6 REMARK 620 6 HOH B 421 O 87.9 100.6 175.4 92.4 88.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CIT RELATED DB: PDB REMARK 900 5CIT CONTAINS RAN WILDTYPE GDP IN THE SAME SPACE GROUP DBREF 5CIW A 1 216 UNP P62826 RAN_HUMAN 1 216 DBREF 5CIW B 1 216 UNP P62826 RAN_HUMAN 1 216 SEQADV 5CIW ALA A 39 UNP P62826 TYR 39 ENGINEERED MUTATION SEQADV 5CIW ALA B 39 UNP P62826 TYR 39 ENGINEERED MUTATION SEQRES 1 A 216 MET ALA ALA GLN GLY GLU PRO GLN VAL GLN PHE LYS LEU SEQRES 2 A 216 VAL LEU VAL GLY ASP GLY GLY THR GLY LYS THR THR PHE SEQRES 3 A 216 VAL LYS ARG HIS LEU THR GLY GLU PHE GLU LYS LYS ALA SEQRES 4 A 216 VAL ALA THR LEU GLY VAL GLU VAL HIS PRO LEU VAL PHE SEQRES 5 A 216 HIS THR ASN ARG GLY PRO ILE LYS PHE ASN VAL TRP ASP SEQRES 6 A 216 THR ALA GLY GLN GLU LYS PHE GLY GLY LEU ARG ASP GLY SEQRES 7 A 216 TYR TYR ILE GLN ALA GLN CYS ALA ILE ILE MET PHE ASP SEQRES 8 A 216 VAL THR SER ARG VAL THR TYR LYS ASN VAL PRO ASN TRP SEQRES 9 A 216 HIS ARG ASP LEU VAL ARG VAL CYS GLU ASN ILE PRO ILE SEQRES 10 A 216 VAL LEU CYS GLY ASN LYS VAL ASP ILE LYS ASP ARG LYS SEQRES 11 A 216 VAL LYS ALA LYS SER ILE VAL PHE HIS ARG LYS LYS ASN SEQRES 12 A 216 LEU GLN TYR TYR ASP ILE SER ALA LYS SER ASN TYR ASN SEQRES 13 A 216 PHE GLU LYS PRO PHE LEU TRP LEU ALA ARG LYS LEU ILE SEQRES 14 A 216 GLY ASP PRO ASN LEU GLU PHE VAL ALA MET PRO ALA LEU SEQRES 15 A 216 ALA PRO PRO GLU VAL VAL MET ASP PRO ALA LEU ALA ALA SEQRES 16 A 216 GLN TYR GLU HIS ASP LEU GLU VAL ALA GLN THR THR ALA SEQRES 17 A 216 LEU PRO ASP GLU ASP ASP ASP LEU SEQRES 1 B 216 MET ALA ALA GLN GLY GLU PRO GLN VAL GLN PHE LYS LEU SEQRES 2 B 216 VAL LEU VAL GLY ASP GLY GLY THR GLY LYS THR THR PHE SEQRES 3 B 216 VAL LYS ARG HIS LEU THR GLY GLU PHE GLU LYS LYS ALA SEQRES 4 B 216 VAL ALA THR LEU GLY VAL GLU VAL HIS PRO LEU VAL PHE SEQRES 5 B 216 HIS THR ASN ARG GLY PRO ILE LYS PHE ASN VAL TRP ASP SEQRES 6 B 216 THR ALA GLY GLN GLU LYS PHE GLY GLY LEU ARG ASP GLY SEQRES 7 B 216 TYR TYR ILE GLN ALA GLN CYS ALA ILE ILE MET PHE ASP SEQRES 8 B 216 VAL THR SER ARG VAL THR TYR LYS ASN VAL PRO ASN TRP SEQRES 9 B 216 HIS ARG ASP LEU VAL ARG VAL CYS GLU ASN ILE PRO ILE SEQRES 10 B 216 VAL LEU CYS GLY ASN LYS VAL ASP ILE LYS ASP ARG LYS SEQRES 11 B 216 VAL LYS ALA LYS SER ILE VAL PHE HIS ARG LYS LYS ASN SEQRES 12 B 216 LEU GLN TYR TYR ASP ILE SER ALA LYS SER ASN TYR ASN SEQRES 13 B 216 PHE GLU LYS PRO PHE LEU TRP LEU ALA ARG LYS LEU ILE SEQRES 14 B 216 GLY ASP PRO ASN LEU GLU PHE VAL ALA MET PRO ALA LEU SEQRES 15 B 216 ALA PRO PRO GLU VAL VAL MET ASP PRO ALA LEU ALA ALA SEQRES 16 B 216 GLN TYR GLU HIS ASP LEU GLU VAL ALA GLN THR THR ALA SEQRES 17 B 216 LEU PRO ASP GLU ASP ASP ASP LEU HET GDP A 301 28 HET MG A 302 1 HET MG B 301 1 HET GDP B 302 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *113(H2 O) HELIX 1 AA1 GLY A 22 LYS A 28 1 7 HELIX 2 AA2 HIS A 30 GLU A 36 1 7 HELIX 3 AA3 ALA A 41 LEU A 43 5 3 HELIX 4 AA4 GLY A 68 GLY A 73 5 6 HELIX 5 AA5 ARG A 76 ILE A 81 1 6 HELIX 6 AA6 SER A 94 ASN A 100 1 7 HELIX 7 AA7 ASN A 100 ARG A 110 1 11 HELIX 8 AA8 LYS A 132 ILE A 136 5 5 HELIX 9 AA9 VAL A 137 LYS A 142 1 6 HELIX 10 AB1 PHE A 157 GLY A 170 1 14 HELIX 11 AB2 ASP A 190 THR A 206 1 17 HELIX 12 AB3 GLY B 22 LYS B 28 1 7 HELIX 13 AB4 HIS B 30 GLU B 36 1 7 HELIX 14 AB5 ALA B 41 LEU B 43 5 3 HELIX 15 AB6 GLY B 68 PHE B 72 5 5 HELIX 16 AB7 SER B 94 ASN B 100 1 7 HELIX 17 AB8 ASN B 100 CYS B 112 1 13 HELIX 18 AB9 LYS B 132 ILE B 136 5 5 HELIX 19 AC1 VAL B 137 LYS B 142 1 6 HELIX 20 AC2 PHE B 157 GLY B 170 1 14 HELIX 21 AC3 ASP B 190 GLN B 205 1 16 SHEET 1 AA1 7 LYS A 38 VAL A 40 0 SHEET 2 AA1 7 VAL A 45 THR A 54 -1 O VAL A 45 N VAL A 40 SHEET 3 AA1 7 GLY A 57 THR A 66 -1 O PHE A 61 N LEU A 50 SHEET 4 AA1 7 GLN A 10 VAL A 16 1 N LEU A 13 O TRP A 64 SHEET 5 AA1 7 CYS A 85 ASP A 91 1 O MET A 89 N VAL A 16 SHEET 6 AA1 7 ILE A 117 ASN A 122 1 O ASN A 122 N PHE A 90 SHEET 7 AA1 7 GLN A 145 ASP A 148 1 O GLN A 145 N LEU A 119 SHEET 1 AA2 3 LYS A 38 VAL A 40 0 SHEET 2 AA2 3 VAL A 45 THR A 54 -1 O VAL A 45 N VAL A 40 SHEET 3 AA2 3 PHE A 176 ALA A 178 -1 O VAL A 177 N HIS A 53 SHEET 1 AA3 7 LYS B 38 VAL B 40 0 SHEET 2 AA3 7 VAL B 45 THR B 54 -1 O VAL B 47 N LYS B 38 SHEET 3 AA3 7 GLY B 57 THR B 66 -1 O PHE B 61 N LEU B 50 SHEET 4 AA3 7 GLN B 10 GLY B 17 1 N PHE B 11 O ASN B 62 SHEET 5 AA3 7 CYS B 85 ASP B 91 1 O ILE B 87 N VAL B 16 SHEET 6 AA3 7 ILE B 117 ASN B 122 1 O ASN B 122 N PHE B 90 SHEET 7 AA3 7 GLN B 145 ASP B 148 1 O GLN B 145 N LEU B 119 SHEET 1 AA4 3 LYS B 38 VAL B 40 0 SHEET 2 AA4 3 VAL B 45 THR B 54 -1 O VAL B 47 N LYS B 38 SHEET 3 AA4 3 PHE B 176 ALA B 178 -1 O VAL B 177 N HIS B 53 LINK OG1 THR A 24 MG MG A 302 1555 1555 2.12 LINK O2B GDP A 301 MG MG A 302 1555 1555 1.98 LINK MG MG A 302 O HOH A 416 1555 1555 2.18 LINK MG MG A 302 O HOH A 424 1555 1555 2.18 LINK MG MG A 302 O HOH A 434 1555 1555 2.15 LINK MG MG A 302 O HOH A 443 1555 1555 1.98 LINK OG1 THR B 24 MG MG B 301 1555 1555 2.18 LINK MG MG B 301 O2B GDP B 302 1555 1555 1.99 LINK MG MG B 301 O HOH B 406 1555 1555 1.93 LINK MG MG B 301 O HOH B 409 1555 1555 2.11 LINK MG MG B 301 O HOH B 415 1555 1555 2.14 LINK MG MG B 301 O HOH B 421 1555 1555 1.93 SITE 1 AC1 21 GLY A 20 THR A 21 GLY A 22 LYS A 23 SITE 2 AC1 21 THR A 24 THR A 25 ASN A 122 LYS A 123 SITE 3 AC1 21 ASP A 125 ILE A 126 SER A 150 ALA A 151 SITE 4 AC1 21 LYS A 152 MG A 302 HOH A 401 HOH A 416 SITE 5 AC1 21 HOH A 418 HOH A 424 HOH A 443 HOH A 454 SITE 6 AC1 21 LYS B 127 SITE 1 AC2 6 THR A 24 GDP A 301 HOH A 416 HOH A 424 SITE 2 AC2 6 HOH A 434 HOH A 443 SITE 1 AC3 6 THR B 24 GDP B 302 HOH B 406 HOH B 409 SITE 2 AC3 6 HOH B 415 HOH B 421 SITE 1 AC4 19 GLY B 20 THR B 21 GLY B 22 LYS B 23 SITE 2 AC4 19 THR B 24 THR B 25 GLU B 70 ASN B 122 SITE 3 AC4 19 LYS B 123 ASP B 125 ILE B 126 SER B 150 SITE 4 AC4 19 ALA B 151 LYS B 152 MG B 301 HOH B 406 SITE 5 AC4 19 HOH B 409 HOH B 410 HOH B 421 CRYST1 57.900 59.330 64.790 90.00 96.55 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017271 0.000000 0.001984 0.00000 SCALE2 0.000000 0.016855 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015536 0.00000