HEADER MUCIN-BINDING PROTEIN 15-JUL-15 5CK0 TITLE BT4246 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUSD HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 40-642; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 GENE: BT_4246; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS SUSD HOMOLOGUE, TETRA-TRICO PEPTIDE REPEAT (TPR), MUCIN-BINDING KEYWDS 2 PROTEIN, MICROBIOTA EXPDTA X-RAY DIFFRACTION AUTHOR N.M.KOROPATKIN REVDAT 2 01-MAY-24 5CK0 1 LINK REVDAT 1 12-OCT-16 5CK0 0 JRNL AUTH D.A.NDEH,S.NAKJANG,K.J.KWIATKOWSKI,N.M.KOROPATKIN,R.P.HIRT, JRNL AUTH 2 D.N.BOLAM JRNL TITL MECHANISTIC INSIGHT INTO MUCIN DEGRADATION BY THE HUMAN GUT JRNL TITL 2 MICROBIOTA REVEALS TARGETING OF THE GLYCOPROTEIN CORE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 55887 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.580 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2408 - 4.8095 0.99 4142 154 0.1662 0.2016 REMARK 3 2 4.8095 - 3.8180 0.99 3940 146 0.1477 0.1652 REMARK 3 3 3.8180 - 3.3355 0.99 3896 145 0.1664 0.2064 REMARK 3 4 3.3355 - 3.0306 0.99 3869 143 0.1814 0.2451 REMARK 3 5 3.0306 - 2.8135 1.00 3872 144 0.1915 0.2377 REMARK 3 6 2.8135 - 2.6476 1.00 3830 142 0.1871 0.2334 REMARK 3 7 2.6476 - 2.5150 1.00 3842 142 0.1931 0.2210 REMARK 3 8 2.5150 - 2.4055 1.00 3836 143 0.1955 0.2205 REMARK 3 9 2.4055 - 2.3129 1.00 3820 141 0.1927 0.2440 REMARK 3 10 2.3129 - 2.2331 1.00 3816 142 0.2051 0.2532 REMARK 3 11 2.2331 - 2.1633 1.00 3797 141 0.2139 0.2706 REMARK 3 12 2.1633 - 2.1015 1.00 3807 141 0.2307 0.2548 REMARK 3 13 2.1015 - 2.0461 0.99 3800 142 0.2427 0.2718 REMARK 3 14 2.0461 - 1.9962 0.95 3620 134 0.2549 0.3247 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5007 REMARK 3 ANGLE : 0.972 6819 REMARK 3 CHIRALITY : 0.041 699 REMARK 3 PLANARITY : 0.005 891 REMARK 3 DIHEDRAL : 12.951 1782 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CK0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211789. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55908 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.996 REMARK 200 RESOLUTION RANGE LOW (A) : 46.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.20250 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.88100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: SEMET STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, KCL, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1351 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1395 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1418 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1499 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 SER A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 GLU A 29 REMARK 465 ASN A 30 REMARK 465 LEU A 31 REMARK 465 TYR A 32 REMARK 465 PHE A 33 REMARK 465 GLN A 34 REMARK 465 GLY A 35 REMARK 465 HIS A 36 REMARK 465 MET A 37 REMARK 465 ALA A 38 REMARK 465 SER A 39 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1315 O HOH A 1328 2.00 REMARK 500 O HOH A 849 O HOH A 1197 2.05 REMARK 500 O HOH A 1362 O HOH A 1401 2.05 REMARK 500 O HOH A 1044 O HOH A 1280 2.09 REMARK 500 O HOH A 1156 O HOH A 1312 2.09 REMARK 500 O HOH A 1229 O HOH A 1386 2.14 REMARK 500 NH1 ARG A 140 O HOH A 801 2.16 REMARK 500 O HOH A 823 O HOH A 1169 2.16 REMARK 500 O HOH A 1196 O HOH A 1410 2.18 REMARK 500 O HOH A 831 O HOH A 1281 2.18 REMARK 500 O HOH A 866 O HOH A 1247 2.19 REMARK 500 O HOH A 1172 O HOH A 1331 2.19 REMARK 500 O HOH A 1387 O HOH A 1438 2.19 REMARK 500 O HOH A 876 O HOH A 1004 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 831 O HOH A 1335 4865 2.04 REMARK 500 O HOH A 1148 O HOH A 1210 4865 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 41 -133.55 170.51 REMARK 500 SER A 64 -4.30 75.71 REMARK 500 ASN A 209 -159.80 -154.00 REMARK 500 TYR A 241 75.49 -119.81 REMARK 500 THR A 284 -95.19 -109.03 REMARK 500 ASP A 292 21.81 -143.79 REMARK 500 SER A 331 29.53 -142.71 REMARK 500 LEU A 357 -77.88 -62.47 REMARK 500 THR A 399 135.64 -36.61 REMARK 500 THR A 440 -58.89 -120.03 REMARK 500 MET A 457 -82.15 -125.21 REMARK 500 ASN A 461 84.22 -168.15 REMARK 500 ASN A 466 -118.60 58.40 REMARK 500 PHE A 479 -4.05 74.94 REMARK 500 MET A 550 97.30 -160.17 REMARK 500 ASN A 587 -2.67 71.53 REMARK 500 PRO A 613 49.22 -77.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 701 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 204 OD1 REMARK 620 2 ARG A 205 O 63.6 REMARK 620 3 GLU A 334 OE1 109.0 118.3 REMARK 620 4 HOH A 809 O 144.2 139.9 41.0 REMARK 620 5 HOH A1012 O 53.2 82.9 145.2 135.0 REMARK 620 6 HOH A1020 O 125.5 152.6 84.9 50.6 85.1 REMARK 620 7 HOH A1073 O 55.8 61.0 66.2 106.4 108.7 146.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 702 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 399 OG1 REMARK 620 2 LYS A 418 O 100.8 REMARK 620 3 VAL A 421 O 150.8 66.0 REMARK 620 4 HOH A1317 O 61.4 159.0 123.7 REMARK 620 5 HOH A1459 O 93.6 90.7 111.8 100.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 705 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CJZ RELATED DB: PDB REMARK 900 BT4246 WITH GALACTOSE DBREF 5CK0 A 40 642 UNP Q89ZX5 Q89ZX5_BACTN 40 642 SEQADV 5CK0 MET A 17 UNP Q89ZX5 INITIATING METHIONINE SEQADV 5CK0 GLY A 18 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 SER A 19 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 SER A 20 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 HIS A 21 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 HIS A 22 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 HIS A 23 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 HIS A 24 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 HIS A 25 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 HIS A 26 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 SER A 27 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 SER A 28 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 GLU A 29 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 ASN A 30 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 LEU A 31 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 TYR A 32 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 PHE A 33 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 GLN A 34 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 GLY A 35 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 HIS A 36 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 MET A 37 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 ALA A 38 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 SER A 39 UNP Q89ZX5 EXPRESSION TAG SEQADV 5CK0 ALA A 207 UNP Q89ZX5 VAL 207 CONFLICT SEQRES 1 A 626 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLU SEQRES 2 A 626 ASN LEU TYR PHE GLN GLY HIS MET ALA SER ALA MET SER SEQRES 3 A 626 SER PRO THR ARG ALA LEU GLY PHE LEU TYR SER CYS TYR SEQRES 4 A 626 GLY GLY VAL SER THR ASP LEU PRO SER ALA TYR LEU GLY SEQRES 5 A 626 GLU ILE ASN SER THR THR ASP GLU TYR VAL LEU PRO TYR SEQRES 6 A 626 SER TRP ASN THR ASP GLY TYR TRP GLY ALA TYR ALA PHE SEQRES 7 A 626 ASN THR ALA SER SER THR ASN GLN ASP TRP LEU TRP GLY SEQRES 8 A 626 THR THR TYR GLN TYR ILE GLY GLN CYS TYR LEU PHE LEU SEQRES 9 A 626 GLN LYS LEU GLU ASN ALA GLY SER ASP ILE ALA SER ASP SEQRES 10 A 626 ALA GLU LYS GLU GLN TRP ARG ALA GLU CYS GLN PHE LEU SEQRES 11 A 626 VAL ALA TYR TYR HIS PHE ALA THR LEU ARG ARG TYR GLY SEQRES 12 A 626 PRO ILE PRO ILE THR ASP SER TYR ILE PRO MET ASP THR SEQRES 13 A 626 PRO THR SER GLU TYR ASN GLY ARG PHE HIS PHE ASP TYR SEQRES 14 A 626 CYS VAL ASP TRP ILE ALA ASN GLN LEU ASP GLU ALA ALA SEQRES 15 A 626 LYS VAL LEU PRO ALA ASN ARG THR ALA THR ASN GLU TRP SEQRES 16 A 626 GLY ARG ALA THR SER THR ILE ALA LYS ALA VAL LYS ALA SEQRES 17 A 626 ARG LEU LEU LEU TYR ALA ALA SER PRO LEU TRP ASN GLY SEQRES 18 A 626 SER PHE PRO TYR PRO ASN TRP GLN ASN GLU ASN PHE GLU SEQRES 19 A 626 THR PRO GLY TYR GLY LYS ALA LEU VAL SER ASN THR TYR SEQRES 20 A 626 ASP LYS SER LYS TRP GLU ARG ALA LEU ALA ALA CYS GLN SEQRES 21 A 626 GLU ALA LEU THR LEU ALA THR THR SER GLY ASP ARG GLU SEQRES 22 A 626 LEU TYR ASP ASP ASP GLU TYR TYR SER ARG GLN SER LEU SEQRES 23 A 626 ASN LEU PRO PHE VAL PRO GLY VAL ALA ASP VAL GLU ASP SEQRES 24 A 626 ASN LYS GLU PHE LEU LYS ASN VAL MET LYS MET ARG TYR SEQRES 25 A 626 ALA VAL SER THR ARG GLU SER GLU GLY ASN LYS GLU ILE SEQRES 26 A 626 ILE TRP GLY LEU SER ASN GLN PHE ASP PHE TYR SER ARG SEQRES 27 A 626 TYR PRO LEU ARG ILE LEU LYS LYS SER ASP GLY THR TRP SEQRES 28 A 626 HIS ALA GLY TYR SER GLY VAL SER PRO THR LEU TYR THR SEQRES 29 A 626 PHE GLU HIS PHE TYR THR ALA ASN GLY LYS LEU PRO GLU SEQRES 30 A 626 LYS ASP LEU ASP PHE THR PRO SER SER GLU TRP PHE GLU SEQRES 31 A 626 SER ALA GLY ILE SER SER ARG GLU ASP ILE ILE LYS LEU SEQRES 32 A 626 ASN VAL GLY ARG GLU PRO ARG PHE TYR ALA TRP MET ALA SEQRES 33 A 626 PHE ASP GLY GLY ASP TYR GLY THR LYS PHE ALA ALA GLY SEQRES 34 A 626 SER PRO LEU LYS LEU GLU MET ARG ASN SER GLU MET HIS SEQRES 35 A 626 GLY TYR ASN PRO SER LEU PHE ASN ARG ASP HIS SER VAL SEQRES 36 A 626 THR GLY PHE LEU THR GLN LYS PHE VAL ASP PRO VAL THR SEQRES 37 A 626 GLU PHE TYR THR ALA GLY GLY SER THR SER GLY THR SER SEQRES 38 A 626 ALA PRO THR ILE LEU PHE ARG LEU ALA GLU LEU TYR LEU SEQRES 39 A 626 ASN VAL ALA GLU CYS HIS ALA ALA LEU GLY ASN THR GLN SEQRES 40 A 626 GLU ALA ILE ASP ALA LEU ASN PRO VAL ARG GLU ARG ALA SEQRES 41 A 626 GLY ILE PRO LYS LEU THR LEU ALA ASP ILE THR ASN ASN SEQRES 42 A 626 MET THR ILE LYS ASP TRP VAL HIS ASN GLU ARG PHE VAL SEQRES 43 A 626 GLU LEU TRP ASN GLU GLY HIS ARG PHE PHE ASP VAL ARG SEQRES 44 A 626 ARG TRP ALA GLU GLY ALA LYS TYR PHE GLY ALA ASN LYS SEQRES 45 A 626 ARG GLU GLY LEU ASN ALA GLU VAL GLN SER PRO THR PHE SEQRES 46 A 626 GLU GLU PHE ASN LYS ARG THR THR VAL ASP ALA PRO TYR SEQRES 47 A 626 VAL TRP GLU ASN ARG MET TYR LEU ASN PRO VAL PHE TYR SEQRES 48 A 626 ASN GLU VAL TYR LYS ASN PRO GLN MET VAL GLN ALA PRO SEQRES 49 A 626 GLY TYR HET K A 701 1 HET K A 702 1 HET NI A 703 1 HET NI A 704 1 HET NI A 705 1 HETNAM K POTASSIUM ION HETNAM NI NICKEL (II) ION FORMUL 2 K 2(K 1+) FORMUL 4 NI 3(NI 2+) FORMUL 7 HOH *699(H2 O) HELIX 1 AA1 SER A 43 TYR A 55 1 13 HELIX 2 AA2 GLY A 56 VAL A 58 5 3 HELIX 3 AA3 PRO A 80 ASP A 86 5 7 HELIX 4 AA4 TYR A 88 PHE A 94 1 7 HELIX 5 AA5 TRP A 104 ASN A 125 1 22 HELIX 6 AA6 SER A 132 GLY A 159 1 28 HELIX 7 AA7 PRO A 173 TYR A 177 5 5 HELIX 8 AA8 HIS A 182 LEU A 201 1 20 HELIX 9 AA9 THR A 215 SER A 232 1 18 HELIX 10 AB1 PRO A 233 ASN A 236 5 4 HELIX 11 AB2 LYS A 265 THR A 284 1 20 HELIX 12 AB3 GLU A 295 GLN A 300 1 6 HELIX 13 AB4 VAL A 313 ASP A 315 5 3 HELIX 14 AB5 ASN A 316 VAL A 330 1 15 HELIX 15 AB6 ARG A 333 GLY A 337 5 5 HELIX 16 AB7 THR A 377 PHE A 384 1 8 HELIX 17 AB8 PRO A 400 TRP A 404 5 5 HELIX 18 AB9 ILE A 417 VAL A 421 5 5 HELIX 19 AC1 GLU A 424 TRP A 430 1 7 HELIX 20 AC2 ASN A 461 ASN A 466 1 6 HELIX 21 AC3 LEU A 505 GLY A 520 1 16 HELIX 22 AC4 ASN A 521 ALA A 536 1 16 HELIX 23 AC5 THR A 542 ILE A 546 5 5 HELIX 24 AC6 THR A 551 LEU A 564 1 14 HELIX 25 AC7 HIS A 569 TRP A 577 1 9 HELIX 26 AC8 GLU A 579 GLY A 585 1 7 HELIX 27 AC9 THR A 600 ASN A 605 1 6 HELIX 28 AD1 GLU A 617 LEU A 622 5 6 HELIX 29 AD2 PHE A 626 ASN A 633 1 8 SHEET 1 AA1 2 TYR A 77 VAL A 78 0 SHEET 2 AA1 2 SER A 375 PRO A 376 -1 O SER A 375 N VAL A 78 SHEET 1 AA2 2 ILE A 341 LEU A 345 0 SHEET 2 AA2 2 THR A 500 ARG A 504 -1 O THR A 500 N LEU A 345 SHEET 1 AA3 2 ARG A 358 LYS A 361 0 SHEET 2 AA3 2 TRP A 367 ALA A 369 -1 O HIS A 368 N LEU A 360 SHEET 1 AA4 2 MET A 431 PHE A 433 0 SHEET 2 AA4 2 PHE A 474 THR A 476 -1 O LEU A 475 N ALA A 432 SHEET 1 AA5 2 ASP A 437 ALA A 443 0 SHEET 2 AA5 2 SER A 446 LYS A 449 -1 O SER A 446 N ALA A 443 SHEET 1 AA6 2 GLU A 485 PHE A 486 0 SHEET 2 AA6 2 SER A 492 THR A 493 -1 O THR A 493 N GLU A 485 SHEET 1 AA7 2 GLU A 590 GLY A 591 0 SHEET 2 AA7 2 THR A 608 THR A 609 -1 O THR A 608 N GLY A 591 LINK OD1 ASN A 204 K K A 701 1555 1555 3.38 LINK O ARG A 205 K K A 701 1555 1555 3.08 LINK OE1 GLU A 334 K K A 701 1555 1555 3.41 LINK OG1 THR A 399 K K A 702 1555 1555 2.96 LINK O LYS A 418 K K A 702 1555 1555 3.01 LINK O VAL A 421 K K A 702 1555 1555 3.04 LINK K K A 701 O HOH A 809 1555 1555 3.34 LINK K K A 701 O HOH A1012 1555 1555 2.56 LINK K K A 701 O HOH A1020 1555 1555 3.01 LINK K K A 701 O HOH A1073 1555 1555 2.32 LINK K K A 702 O HOH A1317 1555 1555 3.26 LINK K K A 702 O HOH A1459 1555 1555 3.23 SITE 1 AC1 6 ASN A 204 ARG A 205 GLU A 334 HOH A1012 SITE 2 AC1 6 HOH A1020 HOH A1073 SITE 1 AC2 4 PHE A 398 THR A 399 LYS A 418 VAL A 421 SITE 1 AC3 2 GLY A 237 ASN A 261 SITE 1 AC4 6 VAL A 630 ASN A 633 PRO A 634 MET A 636 SITE 2 AC4 6 HOH A1361 HOH A1404 SITE 1 AC5 5 PRO A 392 GLU A 393 ASP A 395 PHE A 398 SITE 2 AC5 5 THR A 399 CRYST1 156.216 156.216 114.704 90.00 90.00 120.00 P 6 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006401 0.003696 0.000000 0.00000 SCALE2 0.000000 0.007392 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008718 0.00000