data_5CKI # _entry.id 5CKI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5CKI WWPDB D_1000211357 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5CKI _pdbx_database_status.recvd_initial_deposition_date 2015-07-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ponce-Salvatierra, A.' 1 'Hoebartner, C.' 2 'Pena, V.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 529 _citation.language ? _citation.page_first 231 _citation.page_last 234 _citation.title 'Crystal structure of a DNA catalyst.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nature16471 _citation.pdbx_database_id_PubMed 26735012 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ponce-Salvatierra, A.' 1 primary 'Wawrzyniak-Turek, K.' 2 primary 'Steuerwald, U.' 3 primary 'Hobartner, C.' 4 primary 'Pena, V.' 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5CKI _cell.details ? _cell.formula_units_Z ? _cell.length_a 80.845 _cell.length_a_esd ? _cell.length_b 80.845 _cell.length_b_esd ? _cell.length_c 55.814 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(P*GP*CP*AP*CP*UP*AP*GP*AP*UP*CP*GP*GP*AP*UP*G)-3') ; 4831.938 1 ? ? ? ? 2 polymer syn 'DNA (44-MER)' 13964.939 1 ? ? ? ? 3 non-polymer syn 'COBALT (II) ION' 58.933 4 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GCACUAGAUCGGAUG GCACUAGAUCGGAUG D ? 2 polydeoxyribonucleotide no no ;(DA)(DT)(DC)(DC)(DG)(DA)(DT)(DG)(DG)(DA)(DT)(DC)(DA)(DT)(DA)(DA)(DC)(DG)(DG)(DT) (DC)(DG)(DG)(DA)(DG)(DG)(DG)(DG)(DT)(DT)(DT)(DG)(DC)(DC)(DG)(DT)(DT)(DT)(DA)(DA) (DG)(DT)(DG)(DC)(DC) ; ATCCGATGGATCATAACGGTCGGAGGGGTTTGCCGTTTAAGTGCC Y ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 A n 1 4 C n 1 5 U n 1 6 A n 1 7 G n 1 8 A n 1 9 U n 1 10 C n 1 11 G n 1 12 G n 1 13 A n 1 14 U n 1 15 G n 2 1 DA n 2 2 DT n 2 3 DC n 2 4 DC n 2 5 DG n 2 6 DA n 2 7 DT n 2 8 DG n 2 9 DG n 2 10 DA n 2 11 DT n 2 12 DC n 2 13 DA n 2 14 DT n 2 15 DA n 2 16 DA n 2 17 DC n 2 18 DG n 2 19 DG n 2 20 DT n 2 21 DC n 2 22 DG n 2 23 DG n 2 24 DA n 2 25 DG n 2 26 DG n 2 27 DG n 2 28 DG n 2 29 DT n 2 30 DT n 2 31 DT n 2 32 DG n 2 33 DC n 2 34 DC n 2 35 DG n 2 36 DT n 2 37 DT n 2 38 DT n 2 39 DA n 2 40 DA n 2 41 DG n 2 42 DT n 2 43 DG n 2 44 DC n 2 45 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 15 'synthetic construct' ? 32630 ? 2 1 sample 1 45 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 5CKI 5CKI ? 1 ? 1 2 PDB 5CKI 5CKI ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5CKI D 1 ? 15 ? 5CKI -6 ? 9 ? -6 9 2 2 5CKI Y 1 ? 45 ? 5CKI 1 ? 44 ? 1 44 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5CKI _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.47 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'MPD, spermine, magnesium chloride, sodium chloride, sodium cacodylate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-11-26 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.604 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.604 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5CKI _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.98 _reflns.d_resolution_low 45.93 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4060 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 25.23 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.Rmerge_I_obs 3.99 _reflns_shell.d_res_high 2.98 _reflns_shell.d_res_low 3.09 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_sigI_obs 0.86 _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_gt ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_gt ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_redundancy 24 _reflns_shell.pdbx_rejects ? _reflns_shell.percent_possible_all 98 _reflns_shell.percent_possible_gt ? _reflns_shell.percent_possible_obs ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5CKI _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.985 _refine.ls_d_res_low 45.93 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4053 _refine.ls_number_reflns_R_free 356 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.42 _refine.ls_percent_reflns_R_free 4.97 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2591 _refine.ls_R_factor_R_free 0.3109 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2561 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.55 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1232 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1238 _refine_hist.d_res_high 2.985 _refine_hist.d_res_low 45.93 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? 1380 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.599 ? 2134 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 28.985 ? 614 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.029 ? 251 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 59 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.9853 3.417 . . 119 2239 98.00 . . . 0.4232 . 0.3878 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.417 4.304 . . 120 2292 100.00 . . . 0.4114 . 0.3427 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.304 45.936 . . 117 2273 100.00 . . . 0.2633 . 0.2168 . . . . . . . . . . # _struct.entry_id 5CKI _struct.title 'Crystal structure of 9DB1* deoxyribozyme (Cobalt hexammine soaked crystals)' _struct.pdbx_descriptor ;RNA (5'-R(P*GP*CP*AP*CP*UP*AP*GP*AP*UP*CP*GP*GP*AP*UP*G)-3'), DNA (44-MER) ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5CKI _struct_keywords.text 'deoxyribozyme, RNA-ligase, catalytic DNA, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A A 6 N7 ? ? ? 1_555 C CO . CO ? ? D A -1 D CO 101 1_555 ? ? ? ? ? ? ? 2.203 ? metalc2 metalc ? ? A A 6 N6 ? ? ? 1_555 C CO . CO ? ? D A -1 D CO 101 1_555 ? ? ? ? ? ? ? 2.752 ? metalc3 metalc ? ? B DG 8 N7 ? ? ? 1_555 F CO . CO ? ? Y DG 8 Y CO 102 1_555 ? ? ? ? ? ? ? 2.728 ? metalc4 metalc ? ? B DT 14 OP1 ? ? ? 1_555 H MG . MG ? ? Y DT 14 Y MG 104 1_555 ? ? ? ? ? ? ? 2.138 ? metalc5 metalc ? ? B DA 16 OP1 ? ? ? 1_555 H MG . MG ? ? Y DA 15 Y MG 104 1_555 ? ? ? ? ? ? ? 2.014 ? metalc6 metalc ? ? B DA 16 OP2 ? ? ? 1_555 G MG . MG ? ? Y DA 15 Y MG 103 1_555 ? ? ? ? ? ? ? 2.036 ? metalc7 metalc ? ? B DG 26 OP2 ? ? ? 1_555 F CO . CO ? ? Y DG 25 Y CO 102 1_555 ? ? ? ? ? ? ? 2.227 ? metalc8 metalc ? ? B DA 40 N7 ? ? ? 1_555 E CO . CO ? ? Y DA 39 Y CO 101 1_555 ? ? ? ? ? ? ? 2.161 ? metalc9 metalc ? ? A G 1 N7 ? ? ? 1_555 D CO . CO ? ? D G -6 D CO 102 3_545 ? ? ? ? ? ? ? 1.911 ? metalc10 metalc ? ? A G 1 C5 ? ? ? 1_555 D CO . CO ? ? D G -6 D CO 102 3_545 ? ? ? ? ? ? ? 2.643 ? metalc11 metalc ? ? A G 1 O6 ? ? ? 1_555 D CO . CO ? ? D G -6 D CO 102 3_545 ? ? ? ? ? ? ? 2.761 ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B DC 44 N3 ? ? D G -6 Y DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B DC 44 O2 ? ? D G -6 Y DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B DC 44 N4 ? ? D G -6 Y DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B DG 43 N1 ? ? D C -5 Y DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B DG 43 O6 ? ? D C -5 Y DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B DG 43 N2 ? ? D C -5 Y DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 B DT 42 N3 ? ? D A -4 Y DT 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 B DT 42 O4 ? ? D A -4 Y DT 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 B DG 41 N1 ? ? D C -3 Y DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 B DG 41 O6 ? ? D C -3 Y DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 B DG 41 N2 ? ? D C -3 Y DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 B DA 40 N1 ? ? D U -2 Y DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A U 5 O4 ? ? ? 1_555 B DA 40 N6 ? ? D U -2 Y DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 B DT 31 N3 ? ? D A -1 Y DT 30 1_555 ? ? ? ? ? ? 'A-DT PAIR' ? ? hydrog15 hydrog ? ? A G 7 N2 ? ? ? 1_555 B DT 30 O2 ? ? D G 1 Y DT 29 1_555 ? ? ? ? ? ? 'G-DT MISPAIR' ? ? hydrog16 hydrog ? ? A A 8 N1 ? ? ? 1_555 B DT 7 N3 ? ? D A 2 Y DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A A 8 N6 ? ? ? 1_555 B DT 7 O4 ? ? D A 2 Y DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A U 9 N3 ? ? ? 1_555 B DA 6 N1 ? ? D U 3 Y DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A U 9 O4 ? ? ? 1_555 B DA 6 N6 ? ? D U 3 Y DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A C 10 N3 ? ? ? 1_555 B DG 5 N1 ? ? D C 4 Y DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A C 10 N4 ? ? ? 1_555 B DG 5 O6 ? ? D C 4 Y DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A C 10 O2 ? ? ? 1_555 B DG 5 N2 ? ? D C 4 Y DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A G 11 N1 ? ? ? 1_555 B DC 4 N3 ? ? D G 5 Y DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A G 11 N2 ? ? ? 1_555 B DC 4 O2 ? ? D G 5 Y DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A G 11 O6 ? ? ? 1_555 B DC 4 N4 ? ? D G 5 Y DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A G 12 N1 ? ? ? 1_555 B DC 3 N3 ? ? D G 6 Y DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A G 12 N2 ? ? ? 1_555 B DC 3 O2 ? ? D G 6 Y DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A G 12 O6 ? ? ? 1_555 B DC 3 N4 ? ? D G 6 Y DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A A 13 N1 ? ? ? 1_555 B DT 2 N3 ? ? D A 7 Y DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A A 13 N6 ? ? ? 1_555 B DT 2 O4 ? ? D A 7 Y DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A U 14 N3 ? ? ? 1_555 B DA 1 N1 ? ? D U 8 Y DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A U 14 O4 ? ? ? 1_555 B DA 1 N6 ? ? D U 8 Y DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? B DG 8 N3 ? ? ? 1_555 B DA 10 N6 ? ? Y DG 8 Y DA 10 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? hydrog34 hydrog ? ? B DG 8 N1 ? ? ? 1_555 B DG 27 N7 ? ? Y DG 8 Y DG 26 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? hydrog35 hydrog ? ? B DG 8 N2 ? ? ? 1_555 B DG 27 O6 ? ? Y DG 8 Y DG 26 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? hydrog36 hydrog ? ? B DT 11 O2 ? ? ? 1_555 B DG 25 N2 ? ? Y DT 11 Y DG 24 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? hydrog37 hydrog ? ? B DC 12 N3 ? ? ? 1_555 B DG 27 N1 ? ? Y DC 12 Y DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? B DC 12 N4 ? ? ? 1_555 B DG 27 O6 ? ? Y DC 12 Y DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? B DC 12 O2 ? ? ? 1_555 B DG 27 N2 ? ? Y DC 12 Y DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? B DT 14 O4 ? ? ? 1_555 B DG 22 N1 ? ? Y DT 14 Y DG 21 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? hydrog41 hydrog ? ? B DT 14 N3 ? ? ? 1_555 B DG 26 O6 ? ? Y DT 14 Y DG 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog42 hydrog ? ? B DT 14 O2 ? ? ? 1_555 B DG 26 N1 ? ? Y DT 14 Y DG 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog43 hydrog ? ? B DC 17 N3 ? ? ? 1_555 B DG 35 N1 ? ? Y DC 16 Y DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? B DC 17 N4 ? ? ? 1_555 B DG 35 O6 ? ? Y DC 16 Y DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? B DC 17 O2 ? ? ? 1_555 B DG 35 N2 ? ? Y DC 16 Y DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? B DG 18 N1 ? ? ? 1_555 B DC 34 N3 ? ? Y DG 17 Y DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? B DG 18 N2 ? ? ? 1_555 B DC 34 O2 ? ? Y DG 17 Y DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? B DG 18 O6 ? ? ? 1_555 B DC 34 N4 ? ? Y DG 17 Y DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? B DG 19 N2 ? ? ? 1_555 B DG 23 O6 ? ? Y DG 18 Y DG 22 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? hydrog50 hydrog ? ? B DG 19 N1 ? ? ? 1_555 B DC 33 N3 ? ? Y DG 18 Y DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? B DG 19 N2 ? ? ? 1_555 B DC 33 O2 ? ? Y DG 18 Y DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? B DG 19 O6 ? ? ? 1_555 B DC 33 N4 ? ? Y DG 18 Y DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? B DC 21 N3 ? ? ? 1_555 B DG 32 N1 ? ? Y DC 20 Y DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? B DC 21 N4 ? ? ? 1_555 B DG 32 O6 ? ? Y DC 20 Y DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? B DC 21 O2 ? ? ? 1_555 B DG 32 N2 ? ? Y DC 20 Y DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? B DG 22 N2 ? ? ? 1_555 B DA 24 N1 ? ? Y DG 21 Y DA 23 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? hydrog57 hydrog ? ? B DG 22 N3 ? ? ? 1_555 B DA 24 N6 ? ? Y DG 21 Y DA 23 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? hydrog58 hydrog ? ? B DA 24 N1 ? ? ? 1_555 B DG 32 N2 ? ? Y DA 23 Y DG 31 1_555 ? ? ? ? ? ? 'DA-DG MISPAIR' ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software D CO 101 ? 2 'binding site for residue CO D 101' AC2 Software D CO 102 ? 3 'binding site for residue CO D 102' AC3 Software Y CO 101 ? 1 'binding site for residue CO Y 101' AC4 Software Y CO 102 ? 2 'binding site for residue CO Y 102' AC5 Software Y MG 103 ? 1 'binding site for residue MG Y 103' AC6 Software Y MG 104 ? 2 'binding site for residue MG Y 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 A A 6 ? A D -1 . ? 1_555 ? 2 AC1 2 G A 7 ? G D 1 . ? 1_555 ? 3 AC2 3 G A 1 ? G D -6 . ? 4_554 ? 4 AC2 3 U A 14 ? U D 8 . ? 1_555 ? 5 AC2 3 G A 15 ? G D 9 . ? 1_555 ? 6 AC3 1 DA B 40 ? DA Y 39 . ? 1_555 ? 7 AC4 2 DG B 8 ? DG Y 8 . ? 1_555 ? 8 AC4 2 DG B 26 ? DG Y 25 . ? 1_555 ? 9 AC5 1 DA B 16 ? DA Y 15 . ? 1_555 ? 10 AC6 2 DT B 14 ? DT Y 14 . ? 1_555 ? 11 AC6 2 DA B 16 ? DA Y 15 . ? 1_555 ? # _atom_sites.entry_id 5CKI _atom_sites.fract_transf_matrix[1][1] 0.012369 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012369 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017917 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 -6 -6 G G D . n A 1 2 C 2 -5 -5 C C D . n A 1 3 A 3 -4 -4 A A D . n A 1 4 C 4 -3 -3 C C D . n A 1 5 U 5 -2 -2 U U D . n A 1 6 A 6 -1 -1 A A D . n A 1 7 G 7 1 1 G G D . n A 1 8 A 8 2 2 A A D . n A 1 9 U 9 3 3 U U D . n A 1 10 C 10 4 4 C C D . n A 1 11 G 11 5 5 G G D . n A 1 12 G 12 6 6 G G D . n A 1 13 A 13 7 7 A A D . n A 1 14 U 14 8 8 U U D . n A 1 15 G 15 9 9 G G D . n B 2 1 DA 1 1 1 DA DA Y . n B 2 2 DT 2 2 2 DT DT Y . n B 2 3 DC 3 3 3 DC DC Y . n B 2 4 DC 4 4 4 DC DC Y . n B 2 5 DG 5 5 5 DG DG Y . n B 2 6 DA 6 6 6 DA DA Y . n B 2 7 DT 7 7 7 DT DT Y . n B 2 8 DG 8 8 8 DG DG Y . n B 2 9 DG 9 9 9 DG DG Y . n B 2 10 DA 10 10 10 DA DA Y . n B 2 11 DT 11 11 11 DT DT Y . n B 2 12 DC 12 12 12 DC DC Y . n B 2 13 DA 13 13 13 DA DA Y . n B 2 14 DT 14 14 14 DT DT Y . n B 2 15 DA 15 14 ? ? ? Y A n B 2 16 DA 16 15 15 DA DA Y . n B 2 17 DC 17 16 16 DC DC Y . n B 2 18 DG 18 17 17 DG DG Y . n B 2 19 DG 19 18 18 DG DG Y . n B 2 20 DT 20 19 19 DT DT Y . n B 2 21 DC 21 20 20 DC DC Y . n B 2 22 DG 22 21 21 DG DG Y . n B 2 23 DG 23 22 22 DG DG Y . n B 2 24 DA 24 23 23 DA DA Y . n B 2 25 DG 25 24 24 DG DG Y . n B 2 26 DG 26 25 25 DG DG Y . n B 2 27 DG 27 26 26 DG DG Y . n B 2 28 DG 28 27 27 DG DG Y . n B 2 29 DT 29 28 28 DT DT Y . n B 2 30 DT 30 29 29 DT DT Y . n B 2 31 DT 31 30 30 DT DT Y . n B 2 32 DG 32 31 31 DG DG Y . n B 2 33 DC 33 32 32 DC DC Y . n B 2 34 DC 34 33 33 DC DC Y . n B 2 35 DG 35 34 34 DG DG Y . n B 2 36 DT 36 35 35 DT DT Y . n B 2 37 DT 37 36 36 DT DT Y . n B 2 38 DT 38 37 37 DT DT Y . n B 2 39 DA 39 38 38 DA DA Y . n B 2 40 DA 40 39 39 DA DA Y . n B 2 41 DG 41 40 40 DG DG Y . n B 2 42 DT 42 41 41 DT DT Y . n B 2 43 DG 43 42 42 DG DG Y . n B 2 44 DC 44 43 43 DC DC Y . n B 2 45 DC 45 44 44 DC DC Y . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CO 1 101 9 CO CO D . D 3 CO 1 102 10 CO CO D . E 3 CO 1 101 7 CO CO Y . F 3 CO 1 102 8 CO CO Y . G 4 MG 1 103 1 MG MG Y . H 4 MG 1 104 2 MG MG Y . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3130 ? 1 MORE -55 ? 1 'SSA (A^2)' 9080 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A A 6 ? D A -1 ? 1_555 CO ? C CO . ? D CO 101 ? 1_555 N6 ? A A 6 ? D A -1 ? 1_555 76.0 ? 2 N7 ? B DG 8 ? Y DG 8 ? 1_555 CO ? F CO . ? Y CO 102 ? 1_555 OP2 ? B DG 26 ? Y DG 25 ? 1_555 72.4 ? 3 OP1 ? B DT 14 ? Y DT 14 ? 1_555 MG ? H MG . ? Y MG 104 ? 1_555 OP1 ? B DA 16 ? Y DA 15 ? 1_555 104.0 ? 4 N7 ? A G 1 ? D G -6 ? 1_555 CO ? D CO . ? D CO 102 ? 3_545 C5 ? A G 1 ? D G -6 ? 1_555 30.4 ? 5 N7 ? A G 1 ? D G -6 ? 1_555 CO ? D CO . ? D CO 102 ? 3_545 O6 ? A G 1 ? D G -6 ? 1_555 80.3 ? 6 C5 ? A G 1 ? D G -6 ? 1_555 CO ? D CO . ? D CO 102 ? 3_545 O6 ? A G 1 ? D G -6 ? 1_555 52.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-01-13 2 'Structure model' 1 1 2016-01-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 22.9316 _pdbx_refine_tls.origin_y 4.7277 _pdbx_refine_tls.origin_z 22.6955 _pdbx_refine_tls.T[1][1] 1.0539 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.1146 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.0926 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 1.2921 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.1458 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 1.1304 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 2.6182 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.3343 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.7690 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 4.2460 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -0.7477 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 2.8653 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.0556 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.1105 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.1967 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.5832 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.2188 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.8572 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.2211 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.2552 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.1028 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ;chain 'D' or chain 'Y' ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10pre_2086 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id Y _pdbx_unobs_or_zero_occ_residues.auth_comp_id DA _pdbx_unobs_or_zero_occ_residues.auth_seq_id 14 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code A _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id DA _pdbx_unobs_or_zero_occ_residues.label_seq_id 15 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5CKI 'double helix' 5CKI 'a-form double helix' 5CKI 'bulge loop' 5CKI 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B DC 44 1_555 -0.138 -0.158 -0.074 -2.190 -1.756 -2.354 1 D_G-6:DC43_Y D -6 ? Y 43 ? 19 1 1 A C 2 1_555 B DG 43 1_555 -0.731 -0.160 -0.064 5.358 -4.006 1.089 2 D_C-5:DG42_Y D -5 ? Y 42 ? 19 1 1 A A 3 1_555 B DT 42 1_555 1.296 0.016 0.174 2.571 0.876 -18.734 3 D_A-4:DT41_Y D -4 ? Y 41 ? 20 1 1 A C 4 1_555 B DG 41 1_555 1.188 -0.359 0.078 3.703 -2.775 0.406 4 D_C-3:DG40_Y D -3 ? Y 40 ? 19 1 1 A U 5 1_555 B DA 40 1_555 0.495 -0.063 0.048 0.774 -6.764 -9.898 5 D_U-2:DA39_Y D -2 ? Y 39 ? 20 1 1 A A 6 1_555 B DT 31 1_555 1.869 0.019 -0.315 31.450 -25.459 14.359 6 D_A-1:DT30_Y D -1 ? Y 30 ? ? ? 1 A G 7 1_555 B DT 30 1_555 1.020 0.352 0.784 30.336 -33.685 11.963 7 D_G1:DT29_Y D 1 ? Y 29 ? ? ? 1 B DA 1 1_555 A U 14 1_555 -0.213 -0.222 0.184 -6.857 -8.739 1.868 8 Y_DA1:U8_D Y 1 ? D 8 ? 20 1 1 B DT 2 1_555 A A 13 1_555 0.300 -0.008 0.198 -7.224 -4.965 8.766 9 Y_DT2:A7_D Y 2 ? D 7 ? 20 1 1 B DC 3 1_555 A G 12 1_555 -0.182 -0.025 0.201 -6.029 7.152 3.142 10 Y_DC3:G6_D Y 3 ? D 6 ? 19 1 1 B DC 4 1_555 A G 11 1_555 -1.047 -0.062 0.133 1.332 13.234 -3.490 11 Y_DC4:G5_D Y 4 ? D 5 ? 19 1 1 B DG 5 1_555 A C 10 1_555 0.483 -0.302 0.063 13.650 7.283 -2.813 12 Y_DG5:C4_D Y 5 ? D 4 ? 19 1 1 B DA 6 1_555 A U 9 1_555 0.667 0.013 -0.100 19.433 -5.777 6.115 13 Y_DA6:U3_D Y 6 ? D 3 ? 20 1 1 B DT 7 1_555 A A 8 1_555 -0.162 0.050 -0.612 21.735 -18.846 2.112 14 Y_DT7:A2_D Y 7 ? D 2 ? 20 1 1 B DG 27 1_555 B DC 12 1_555 0.578 0.086 1.044 21.004 4.213 -2.218 15 Y_DG26:DC12_Y Y 26 ? Y 12 ? 19 1 1 B DT 14 1_555 B DG 26 1_555 2.358 -0.711 0.707 -0.744 7.137 -2.526 16 Y_DT14:DG25_Y Y 14 ? Y 25 ? 28 1 1 B DG 22 1_555 B DA 24 1_555 3.392 -3.994 0.131 -21.571 10.016 -59.003 17 Y_DG21:DA23_Y Y 21 ? Y 23 ? 10 6 1 B DT 11 1_555 B DG 25 1_555 -0.619 0.568 0.199 11.686 -27.877 1.749 18 Y_DT11:DG24_Y Y 11 ? Y 24 ? ? ? 1 B DC 17 1_555 B DG 35 1_555 0.087 -0.071 -0.050 -9.138 -7.367 -5.227 19 Y_DC16:DG34_Y Y 16 ? Y 34 ? 19 1 1 B DG 18 1_555 B DC 34 1_555 -0.190 -0.140 -0.287 -2.181 -6.923 -0.516 20 Y_DG17:DC33_Y Y 17 ? Y 33 ? 19 1 1 B DG 19 1_555 B DC 33 1_555 -0.216 -0.142 -0.202 -1.121 -8.461 0.960 21 Y_DG18:DC32_Y Y 18 ? Y 32 ? 19 1 1 B DC 21 1_555 B DG 32 1_555 1.208 -0.394 -0.489 22.637 -22.163 9.457 22 Y_DC20:DG31_Y Y 20 ? Y 31 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B DC 44 1_555 A C 2 1_555 B DG 43 1_555 -0.221 -1.697 3.062 0.214 3.454 33.760 -3.412 0.410 2.878 5.929 -0.367 33.932 1 DD_G-6C-5:DG42DC43_YY D -6 ? Y 43 ? D -5 ? Y 42 ? 1 A C 2 1_555 B DG 43 1_555 A A 3 1_555 B DT 42 1_555 -0.938 -1.646 3.065 -0.945 11.438 43.424 -3.071 1.154 2.592 15.145 1.251 44.844 2 DD_C-5A-4:DT41DG42_YY D -5 ? Y 42 ? D -4 ? Y 41 ? 1 A A 3 1_555 B DT 42 1_555 A C 4 1_555 B DG 41 1_555 0.660 -1.773 3.284 0.662 3.726 29.195 -4.265 -1.161 3.053 7.352 -1.306 29.433 3 DD_A-4C-3:DG40DT41_YY D -4 ? Y 41 ? D -3 ? Y 40 ? 1 A C 4 1_555 B DG 41 1_555 A U 5 1_555 B DA 40 1_555 0.056 -1.869 3.099 3.738 4.687 35.896 -3.589 0.386 2.832 7.540 -6.013 36.377 4 DD_C-3U-2:DA39DG40_YY D -3 ? Y 40 ? D -2 ? Y 39 ? 1 A U 5 1_555 B DA 40 1_555 A A 6 1_555 B DT 31 1_555 1.820 -1.421 6.865 -21.904 31.644 45.552 -4.591 -4.028 4.039 34.567 23.927 58.963 5 DD_U-2A-1:DT30DA39_YY D -2 ? Y 39 ? D -1 ? Y 30 ? 1 A A 6 1_555 B DT 31 1_555 A G 7 1_555 B DT 30 1_555 0.788 0.524 3.728 3.466 5.745 24.759 -0.728 -0.624 3.822 13.094 -7.899 25.638 6 DD_A-1G1:DT29DT30_YY D -1 ? Y 30 ? D 1 ? Y 29 ? 1 B DA 1 1_555 A U 14 1_555 B DT 2 1_555 A A 13 1_555 0.217 -1.495 3.282 -1.062 1.126 35.812 -2.589 -0.503 3.228 1.829 1.726 35.845 7 YY_DA1DT2:A7U8_DD Y 1 ? D 8 ? Y 2 ? D 7 ? 1 B DT 2 1_555 A A 13 1_555 B DC 3 1_555 A G 12 1_555 -0.294 -1.508 3.136 -1.565 6.336 28.432 -4.256 0.272 2.755 12.689 3.135 29.157 8 YY_DT2DC3:G6A7_DD Y 2 ? D 7 ? Y 3 ? D 6 ? 1 B DC 3 1_555 A G 12 1_555 B DC 4 1_555 A G 11 1_555 -0.747 -1.515 3.025 -1.512 6.426 27.712 -4.373 1.214 2.649 13.181 3.101 28.473 9 YY_DC3DC4:G5G6_DD Y 3 ? D 6 ? Y 4 ? D 5 ? 1 B DC 4 1_555 A G 11 1_555 B DG 5 1_555 A C 10 1_555 -0.242 -0.973 2.706 -1.386 6.013 37.708 -2.099 0.229 2.534 9.228 2.127 38.192 10 YY_DC4DG5:C4G5_DD Y 4 ? D 5 ? Y 5 ? D 4 ? 1 B DG 5 1_555 A C 10 1_555 B DA 6 1_555 A U 9 1_555 0.207 -0.624 3.072 1.410 6.399 35.843 -1.820 -0.151 2.926 10.291 -2.268 36.417 11 YY_DG5DA6:U3C4_DD Y 5 ? D 4 ? Y 6 ? D 3 ? 1 B DA 6 1_555 A U 9 1_555 B DT 7 1_555 A A 8 1_555 0.450 -0.821 3.071 5.928 4.130 36.866 -1.780 0.025 2.999 6.455 -9.265 37.543 12 YY_DA6DT7:A2U3_DD Y 6 ? D 3 ? Y 7 ? D 2 ? 1 B DT 7 1_555 A A 8 1_555 B DG 27 1_555 B DC 12 1_555 -5.824 -1.388 2.127 56.538 168.240 -59.673 -0.936 -2.365 3.809 -84.719 28.470 -177.819 13 YY_DT7DG26:DC12A2_YD Y 7 ? D 2 ? Y 26 ? Y 12 ? 1 B DG 27 1_555 B DC 12 1_555 B DT 14 1_555 B DG 26 1_555 0.847 2.689 0.536 -168.068 57.355 37.012 1.255 -0.686 0.233 28.944 84.814 177.710 14 YY_DG26DT14:DG25DC12_YY Y 26 ? Y 12 ? Y 14 ? Y 25 ? 1 B DT 14 1_555 B DG 26 1_555 B DG 22 1_555 B DA 24 1_555 3.878 3.665 -3.307 143.117 65.047 -115.598 -1.325 0.810 -5.466 -33.234 73.122 -167.911 15 YY_DT14DG21:DA23DG25_YY Y 14 ? Y 25 ? Y 21 ? Y 23 ? 1 B DC 17 1_555 B DG 35 1_555 B DG 18 1_555 B DC 34 1_555 -0.706 0.686 3.440 -2.118 3.861 36.430 0.525 0.811 3.526 6.148 3.372 36.687 16 YY_DC16DG17:DC33DG34_YY Y 16 ? Y 34 ? Y 17 ? Y 33 ? 1 B DG 18 1_555 B DC 34 1_555 B DG 19 1_555 B DC 33 1_555 -0.229 -0.421 3.071 -4.664 4.387 32.386 -1.438 -0.338 2.993 7.770 8.262 32.996 17 YY_DG17DG18:DC32DC33_YY Y 17 ? Y 33 ? Y 18 ? Y 32 ? 1 B DG 19 1_555 B DC 33 1_555 B DC 21 1_555 B DG 32 1_555 1.009 -0.446 2.661 7.843 -2.108 46.933 -0.410 -0.720 2.802 -2.624 -9.762 47.591 18 YY_DG18DC20:DG31DC32_YY Y 18 ? Y 32 ? Y 20 ? Y 31 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'COBALT (II) ION' CO 4 'MAGNESIUM ION' MG #