HEADER TRANSFERASE/ANTIBIOTIC 15-JUL-15 5CKR
TITLE CRYSTAL STRUCTURE OF MRAY IN COMPLEX WITH MURAYMYCIN D2
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: UDP-MURNAC-PENTAPEPTIDE PHOSPHOTRANSFERASE;
COMPND 5 EC: 2.7.8.13;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS (STRAIN VF5);
SOURCE 3 ORGANISM_TAXID: 224324;
SOURCE 4 STRAIN: VF5;
SOURCE 5 GENE: MRAY, AQ_053;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26
KEYWDS ALPHA-HELICAL, PNPT SUPERFAMILY, PHOSPHO-MURNAC-PENTAPEPTIDE
KEYWDS 2 TRANSLOCASE, MEMBRANE PROTEIN, BACTERIAL CELL WALL, SYNTHESIS,
KEYWDS 3 NATURAL PRODUCT INHIBITOR, TRANSFERASE-ANTIBIOTIC COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR S.Y.LEE,B.C.CHUNG,E.H.MASHALIDIS,T.TANINO,M.KIM,J.HONG,S.ICHIKAWA
REVDAT 5 27-SEP-23 5CKR 1 HETSYN
REVDAT 4 25-DEC-19 5CKR 1 REMARK
REVDAT 3 27-SEP-17 5CKR 1 JRNL REMARK
REVDAT 2 01-JUN-16 5CKR 1 JRNL
REVDAT 1 02-MAR-16 5CKR 0
JRNL AUTH B.C.CHUNG,E.H.MASHALIDIS,T.TANINO,M.KIM,A.MATSUDA,J.HONG,
JRNL AUTH 2 S.ICHIKAWA,S.Y.LEE
JRNL TITL STRUCTURAL INSIGHTS INTO INHIBITION OF LIPID I PRODUCTION IN
JRNL TITL 2 BACTERIAL CELL WALL SYNTHESIS.
JRNL REF NATURE V. 533 557 2016
JRNL REFN ESSN 1476-4687
JRNL PMID 27088606
JRNL DOI 10.1038/NATURE17636
REMARK 2
REMARK 2 RESOLUTION. 2.95 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.9_1692
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.03
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3
REMARK 3 NUMBER OF REFLECTIONS : 14053
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.248
REMARK 3 R VALUE (WORKING SET) : 0.247
REMARK 3 FREE R VALUE : 0.261
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 702
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 51.0326 - 5.0431 1.00 2801 138 0.2403 0.2543
REMARK 3 2 5.0431 - 4.0034 1.00 2708 129 0.2071 0.2065
REMARK 3 3 4.0034 - 3.4975 1.00 2660 132 0.2337 0.2433
REMARK 3 4 3.4975 - 3.1778 1.00 2620 169 0.2973 0.3245
REMARK 3 5 3.1778 - 2.9500 0.97 2562 134 0.3548 0.3814
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.650
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.008 2700
REMARK 3 ANGLE : 1.139 3682
REMARK 3 CHIRALITY : 0.049 448
REMARK 3 PLANARITY : 0.006 432
REMARK 3 DIHEDRAL : 12.763 900
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5CKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-15.
REMARK 100 THE DEPOSITION ID IS D_1000211243.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 15-FEB-14
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.6
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 22-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.00
REMARK 200 MONOCHROMATOR : SI(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 0.6.1, IMOSFLM 0.7.1
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14178
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950
REMARK 200 RESOLUTION RANGE LOW (A) : 67.900
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 7.000
REMARK 200 R MERGE (I) : 0.27000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 6.30
REMARK 200 R MERGE FOR SHELL (I) : 1.50000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4J72
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 69.22
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MGCL2, 40% PEG400, AND 100 MM
REMARK 280 SODIUM CACODYLATE PH 5.6, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 290K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -X,Y,-Z+1/2
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.90000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.90000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.24000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.02500
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.24000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.02500
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.90000
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.24000
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.02500
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.90000
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.24000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.02500
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2700 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 28170 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -5
REMARK 465 PRO A -4
REMARK 465 ALA A -3
REMARK 465 VAL A -2
REMARK 465 PRO A -1
REMARK 465 ARG A 0
REMARK 465 MET A 1
REMARK 465 LEU A 2
REMARK 465 TYR A 3
REMARK 465 GLN A 4
REMARK 465 LEU A 5
REMARK 465 ALA A 6
REMARK 465 LEU A 7
REMARK 465 LEU A 8
REMARK 465 LEU A 9
REMARK 465 LYS A 10
REMARK 465 ASP A 11
REMARK 465 TYR A 12
REMARK 465 TRP A 13
REMARK 465 PHE A 14
REMARK 465 ALA A 15
REMARK 465 PHE A 16
REMARK 465 ASN A 17
REMARK 465 VAL A 18
REMARK 465 LEU A 19
REMARK 465 TYR A 58
REMARK 465 VAL A 59
REMARK 465 ARG A 60
REMARK 465 GLU A 61
REMARK 465 TYR A 62
REMARK 465 THR A 63
REMARK 465 PRO A 64
REMARK 465 GLU A 65
REMARK 465 SER A 66
REMARK 465 HIS A 67
REMARK 465 GLU A 68
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2
REMARK 470 TYR A 72 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 LYS A 125 CG CD CE NZ
REMARK 470 LYS A 131 CG CD CE NZ
REMARK 470 LYS A 357 CG CD CE NZ
REMARK 470 ARG A 359 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD1 ASP A 193 O HOH A 501 1.96
REMARK 500 O ILE A 148 O ALA A 152 2.07
REMARK 500 O GLY A 197 NE1 TRP A 342 2.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS A 98 -2.30 78.35
REMARK 500 LYS A 125 -1.27 80.19
REMARK 500 TYR A 150 -64.07 -120.75
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 57M A 401
DBREF 5CKR A 1 359 UNP O66465 MRAY_AQUAE 1 359
SEQADV 5CKR GLY A -5 UNP O66465 EXPRESSION TAG
SEQADV 5CKR PRO A -4 UNP O66465 EXPRESSION TAG
SEQADV 5CKR ALA A -3 UNP O66465 EXPRESSION TAG
SEQADV 5CKR VAL A -2 UNP O66465 EXPRESSION TAG
SEQADV 5CKR PRO A -1 UNP O66465 EXPRESSION TAG
SEQADV 5CKR ARG A 0 UNP O66465 EXPRESSION TAG
SEQRES 1 A 365 GLY PRO ALA VAL PRO ARG MET LEU TYR GLN LEU ALA LEU
SEQRES 2 A 365 LEU LEU LYS ASP TYR TRP PHE ALA PHE ASN VAL LEU LYS
SEQRES 3 A 365 TYR ILE THR PHE ARG SER PHE THR ALA VAL LEU ILE ALA
SEQRES 4 A 365 PHE PHE LEU THR LEU VAL LEU SER PRO SER PHE ILE ASN
SEQRES 5 A 365 ARG LEU ARG LYS ILE GLN ARG LEU PHE GLY GLY TYR VAL
SEQRES 6 A 365 ARG GLU TYR THR PRO GLU SER HIS GLU VAL LYS LYS TYR
SEQRES 7 A 365 THR PRO THR MET GLY GLY ILE VAL ILE LEU ILE VAL VAL
SEQRES 8 A 365 THR LEU SER THR LEU LEU LEU MET ARG TRP ASP ILE LYS
SEQRES 9 A 365 TYR THR TRP VAL VAL LEU LEU SER PHE LEU SER PHE GLY
SEQRES 10 A 365 THR ILE GLY PHE TRP ASP ASP TYR VAL LYS LEU LYS ASN
SEQRES 11 A 365 LYS LYS GLY ILE SER ILE LYS THR LYS PHE LEU LEU GLN
SEQRES 12 A 365 VAL LEU SER ALA SER LEU ILE SER VAL LEU ILE TYR TYR
SEQRES 13 A 365 TRP ALA ASP ILE ASP THR ILE LEU TYR PHE PRO PHE PHE
SEQRES 14 A 365 LYS GLU LEU TYR VAL ASP LEU GLY VAL LEU TYR LEU PRO
SEQRES 15 A 365 PHE ALA VAL PHE VAL ILE VAL GLY SER ALA ASN ALA VAL
SEQRES 16 A 365 ASN LEU THR ASP GLY LEU ASP GLY LEU ALA ILE GLY PRO
SEQRES 17 A 365 ALA MET THR THR ALA THR ALA LEU GLY VAL VAL ALA TYR
SEQRES 18 A 365 ALA VAL GLY HIS SER LYS ILE ALA GLN TYR LEU ASN ILE
SEQRES 19 A 365 PRO TYR VAL PRO TYR ALA GLY GLU LEU THR VAL PHE CYS
SEQRES 20 A 365 PHE ALA LEU VAL GLY ALA GLY LEU GLY PHE LEU TRP PHE
SEQRES 21 A 365 ASN SER PHE PRO ALA GLN MET PHE MET GLY ASP VAL GLY
SEQRES 22 A 365 SER LEU SER ILE GLY ALA SER LEU ALA THR VAL ALA LEU
SEQRES 23 A 365 LEU THR LYS SER GLU PHE ILE PHE ALA VAL ALA ALA GLY
SEQRES 24 A 365 VAL PHE VAL PHE GLU THR ILE SER VAL ILE LEU GLN ILE
SEQRES 25 A 365 ILE TYR PHE ARG TRP THR GLY GLY LYS ARG LEU PHE LYS
SEQRES 26 A 365 ARG ALA PRO PHE HIS HIS HIS LEU GLU LEU ASN GLY LEU
SEQRES 27 A 365 PRO GLU PRO LYS ILE VAL VAL ARG MET TRP ILE ILE SER
SEQRES 28 A 365 ILE LEU LEU ALA ILE ILE ALA ILE SER MET LEU LYS LEU
SEQRES 29 A 365 ARG
HET 57M A 401 64
HETNAM 57M MURAYMYCIN D2
HETSYN 57M N-({(1S)-2-{[(2S)-1-{[3-({(1S,2S)-2-[(5-AMINO-5-DEOXY-
HETSYN 2 57M BETA-D-RIBOFURANOSYL)OXY]-1-CARBOXY-2-[(2S,3S,4R,5R)-
HETSYN 3 57M 5-(2,4-DIOXO -3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-
HETSYN 4 57M DIHYDROXYTETRAHYDROFURAN-2-YL]ETHYL}AMINO)
HETSYN 5 57M PROPYL]AMINO}-4-METHYL-1-OXOPENTAN-2-YL]AM INO}-1-
HETSYN 6 57M [(4S)-2-AMINO-3,4,5,6-TETRAHYDROPYRIMIDIN-4-YL]-2-
HETSYN 7 57M OXOETHYL}CARBAMOYL)-L-VALINE
FORMUL 2 57M C37 H61 N11 O16
FORMUL 3 HOH *9(H2 O)
HELIX 1 AA1 LYS A 20 GLY A 57 1 38
HELIX 2 AA2 GLY A 77 MET A 93 1 17
HELIX 3 AA3 LYS A 98 LYS A 125 1 28
HELIX 4 AA4 SER A 129 TYR A 150 1 22
HELIX 5 AA5 LEU A 173 ASP A 193 1 21
HELIX 6 AA6 ALA A 199 VAL A 217 1 19
HELIX 7 AA7 HIS A 219 LEU A 226 1 8
HELIX 8 AA8 ALA A 234 SER A 256 1 23
HELIX 9 AA9 MET A 263 THR A 282 1 20
HELIX 10 AB1 SER A 284 ALA A 292 1 9
HELIX 11 AB2 ALA A 292 GLY A 313 1 22
HELIX 12 AB3 PRO A 322 ASN A 330 1 9
HELIX 13 AB4 PRO A 333 LYS A 357 1 25
SHEET 1 AA1 2 ILE A 157 TYR A 159 0
SHEET 2 AA1 2 TYR A 167 ASP A 169 -1 O VAL A 168 N LEU A 158
CISPEP 1 PHE A 257 PRO A 258 0 -10.71
CISPEP 2 ALA A 321 PRO A 322 0 6.23
SITE 1 AC1 20 LYS A 70 THR A 75 ASN A 190 ASP A 193
SITE 2 AC1 20 GLY A 194 LEU A 195 ASP A 196 ASN A 255
SITE 3 AC1 20 PHE A 262 MET A 263 GLY A 264 ASP A 265
SITE 4 AC1 20 SER A 268 VAL A 302 GLN A 305 ARG A 320
SITE 5 AC1 20 ALA A 321 PRO A 322 HIS A 325 HOH A 503
CRYST1 94.480 102.050 135.800 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010584 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009799 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007364 0.00000