HEADER HYDROLASE/DNA 16-JUL-15 5CL3 TITLE ALKYLPURINE DNA GLYCOSYLASE ALKD BOUND TO DNA CONTAINING A 3- TITLE 2 METHYLADENINE ANALOG (100% SUBSTRATE AT 4 HOURS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKD; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*CP*CP*GP*AP*(DZM)P*AP*GP*TP*CP*CP*G)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*CP*GP*GP*AP*CP*TP*TP*TP*CP*GP*GP*G)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 ATCC: 14579; SOURCE 5 GENE: IKE_03968; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBG103; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS DNA GLYCOSYLASE, HEAT-LIKE REPEAT, PROTEIN-DNA COMPLEX, HYDROLASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.A.MULLINS,B.F.EICHMAN REVDAT 6 27-SEP-23 5CL3 1 REMARK REVDAT 5 27-NOV-19 5CL3 1 REMARK REVDAT 4 06-SEP-17 5CL3 1 JRNL REMARK REVDAT 3 25-NOV-15 5CL3 1 JRNL REVDAT 2 18-NOV-15 5CL3 1 JRNL REVDAT 1 28-OCT-15 5CL3 0 JRNL AUTH E.A.MULLINS,R.SHI,Z.D.PARSONS,P.K.YUEN,S.S.DAVID,Y.IGARASHI, JRNL AUTH 2 B.F.EICHMAN JRNL TITL THE DNA GLYCOSYLASE ALKD USES A NON-BASE-FLIPPING MECHANISM JRNL TITL 2 TO EXCISE BULKY LESIONS. JRNL REF NATURE V. 527 254 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 26524531 JRNL DOI 10.1038/NATURE15728 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.0063 - 3.9410 1.00 2644 140 0.1379 0.1545 REMARK 3 2 3.9410 - 3.1285 1.00 2609 137 0.1455 0.1513 REMARK 3 3 3.1285 - 2.7331 1.00 2609 140 0.1602 0.1985 REMARK 3 4 2.7331 - 2.4833 1.00 2612 141 0.1715 0.2284 REMARK 3 5 2.4833 - 2.3053 1.00 2581 134 0.1645 0.2100 REMARK 3 6 2.3053 - 2.1694 1.00 2608 133 0.1658 0.2415 REMARK 3 7 2.1694 - 2.0608 1.00 2590 138 0.1849 0.2774 REMARK 3 8 2.0608 - 1.9711 0.99 2565 136 0.2169 0.3046 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2637 REMARK 3 ANGLE : 0.990 3695 REMARK 3 CHIRALITY : 0.041 397 REMARK 3 PLANARITY : 0.005 373 REMARK 3 DIHEDRAL : 19.613 1016 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1847 20.6395 65.4523 REMARK 3 T TENSOR REMARK 3 T11: 0.3573 T22: 0.2236 REMARK 3 T33: 0.2715 T12: -0.0162 REMARK 3 T13: 0.0339 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 4.2132 L22: 6.4353 REMARK 3 L33: 6.9230 L12: -1.7759 REMARK 3 L13: 1.3633 L23: -5.8542 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: 0.0654 S13: 0.3607 REMARK 3 S21: 0.1787 S22: -0.1871 S23: -0.1154 REMARK 3 S31: -0.6809 S32: 0.0373 S33: 0.1469 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.2262 6.6761 70.4946 REMARK 3 T TENSOR REMARK 3 T11: 0.2215 T22: 0.2252 REMARK 3 T33: 0.1910 T12: -0.0075 REMARK 3 T13: -0.0448 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 7.8688 L22: 2.4271 REMARK 3 L33: 8.6996 L12: -1.6192 REMARK 3 L13: -7.7967 L23: 2.3717 REMARK 3 S TENSOR REMARK 3 S11: -0.0868 S12: -0.5978 S13: -0.1121 REMARK 3 S21: 0.1590 S22: 0.0700 S23: 0.0069 REMARK 3 S31: -0.0219 S32: 0.5122 S33: 0.0508 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1604 12.6349 62.0637 REMARK 3 T TENSOR REMARK 3 T11: 0.2305 T22: 0.2713 REMARK 3 T33: 0.2539 T12: -0.0538 REMARK 3 T13: -0.0047 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 6.8129 L22: 6.3355 REMARK 3 L33: 8.9185 L12: -5.6024 REMARK 3 L13: 4.5832 L23: -5.3802 REMARK 3 S TENSOR REMARK 3 S11: 0.1617 S12: -0.1700 S13: -0.2174 REMARK 3 S21: -0.1362 S22: 0.2053 S23: 0.4678 REMARK 3 S31: 0.1346 S32: -0.3783 S33: -0.3838 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.9378 19.9799 55.4061 REMARK 3 T TENSOR REMARK 3 T11: 0.2689 T22: 0.2129 REMARK 3 T33: 0.2329 T12: -0.0127 REMARK 3 T13: 0.0201 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.9954 L22: 2.2189 REMARK 3 L33: 7.5199 L12: -1.3283 REMARK 3 L13: 1.7436 L23: -1.5869 REMARK 3 S TENSOR REMARK 3 S11: -0.0701 S12: 0.0223 S13: 0.3442 REMARK 3 S21: 0.1136 S22: -0.1259 S23: -0.1448 REMARK 3 S31: -0.5253 S32: 0.1545 S33: -0.0214 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.7189 10.0706 46.9910 REMARK 3 T TENSOR REMARK 3 T11: 0.2168 T22: 0.1564 REMARK 3 T33: 0.1901 T12: -0.0203 REMARK 3 T13: 0.0208 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.5799 L22: 0.7401 REMARK 3 L33: 3.5945 L12: -0.3492 REMARK 3 L13: -0.9782 L23: 0.1463 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: 0.0042 S13: 0.0076 REMARK 3 S21: -0.0559 S22: -0.0234 S23: 0.0502 REMARK 3 S31: -0.0858 S32: -0.0895 S33: 0.0327 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.4680 -0.2077 43.0966 REMARK 3 T TENSOR REMARK 3 T11: 0.2124 T22: 0.1582 REMARK 3 T33: 0.1782 T12: 0.0076 REMARK 3 T13: -0.0043 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 6.0731 L22: 5.2554 REMARK 3 L33: 4.9933 L12: 1.1128 REMARK 3 L13: 0.6595 L23: 0.8827 REMARK 3 S TENSOR REMARK 3 S11: 0.1058 S12: 0.2724 S13: -0.0924 REMARK 3 S21: -0.4000 S22: 0.0506 S23: 0.2578 REMARK 3 S31: -0.0977 S32: -0.0449 S33: -0.0067 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.1967 -7.5417 43.1455 REMARK 3 T TENSOR REMARK 3 T11: 0.2480 T22: 0.1985 REMARK 3 T33: 0.1789 T12: 0.0004 REMARK 3 T13: 0.0133 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.8425 L22: 4.6856 REMARK 3 L33: 1.0030 L12: -0.0833 REMARK 3 L13: -0.5273 L23: 0.4814 REMARK 3 S TENSOR REMARK 3 S11: -0.0606 S12: 0.0264 S13: -0.1714 REMARK 3 S21: -0.2274 S22: -0.0191 S23: 0.0089 REMARK 3 S31: 0.1589 S32: 0.0453 S33: 0.0470 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.6040 -17.3204 47.8764 REMARK 3 T TENSOR REMARK 3 T11: 0.3206 T22: 0.2236 REMARK 3 T33: 0.2304 T12: 0.0082 REMARK 3 T13: 0.0658 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 3.4790 L22: 2.1864 REMARK 3 L33: 3.9161 L12: -0.7752 REMARK 3 L13: 2.1306 L23: 1.7949 REMARK 3 S TENSOR REMARK 3 S11: 0.1411 S12: -0.2194 S13: 0.0418 REMARK 3 S21: 0.2960 S22: -0.1646 S23: 0.0797 REMARK 3 S31: 0.1771 S32: -0.2371 S33: 0.0528 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.1419 -10.2044 62.5548 REMARK 3 T TENSOR REMARK 3 T11: 0.2849 T22: 0.4078 REMARK 3 T33: 0.4005 T12: 0.0342 REMARK 3 T13: 0.0553 T23: 0.1214 REMARK 3 L TENSOR REMARK 3 L11: 0.1675 L22: 4.7778 REMARK 3 L33: 3.9623 L12: -0.8260 REMARK 3 L13: -0.5176 L23: 0.9477 REMARK 3 S TENSOR REMARK 3 S11: -0.3353 S12: -0.8091 S13: -0.7775 REMARK 3 S21: 0.1729 S22: 0.2333 S23: -0.0607 REMARK 3 S31: 0.2498 S32: -0.2412 S33: 0.0385 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.0939 -14.6111 64.0628 REMARK 3 T TENSOR REMARK 3 T11: 0.3877 T22: 0.7394 REMARK 3 T33: 0.6852 T12: 0.0572 REMARK 3 T13: 0.1074 T23: 0.2731 REMARK 3 L TENSOR REMARK 3 L11: 8.8628 L22: 2.9608 REMARK 3 L33: 8.7872 L12: -2.2923 REMARK 3 L13: -7.9379 L23: 4.0264 REMARK 3 S TENSOR REMARK 3 S11: -1.2036 S12: 0.0028 S13: -1.4920 REMARK 3 S21: 0.6279 S22: 0.5542 S23: 0.5436 REMARK 3 S31: 0.5061 S32: 0.4557 S33: 0.7879 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 7 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.0986 -6.4104 61.9486 REMARK 3 T TENSOR REMARK 3 T11: 0.3355 T22: 0.4699 REMARK 3 T33: 0.4245 T12: 0.0347 REMARK 3 T13: 0.0136 T23: 0.0690 REMARK 3 L TENSOR REMARK 3 L11: 5.3935 L22: 8.1207 REMARK 3 L33: 9.2495 L12: 2.1828 REMARK 3 L13: -0.9721 L23: 1.4376 REMARK 3 S TENSOR REMARK 3 S11: -0.4100 S12: -0.9574 S13: -0.8796 REMARK 3 S21: -0.5740 S22: 0.5974 S23: 0.7624 REMARK 3 S31: -0.6533 S32: -1.3216 S33: -0.1310 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211724. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21947 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.52100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.865 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3BVS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% W/V PEG4000, 42 MM SODIUM ACETATE, REMARK 280 PH 4.6, 85 MM AMMONIUM ACETATE, 5% V/V GLYCEROL, PH 5.7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.82600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 DT C 18 O HOH C 101 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 14 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG C 23 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 54 157.64 68.81 REMARK 500 THR A 118 -76.14 -93.05 REMARK 500 TYR A 134 -47.69 -134.84 REMARK 500 LYS A 158 -119.42 52.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CL4 RELATED DB: PDB REMARK 900 RELATED ID: 5CL5 RELATED DB: PDB REMARK 900 RELATED ID: 5CL6 RELATED DB: PDB REMARK 900 RELATED ID: 5CL7 RELATED DB: PDB REMARK 900 RELATED ID: 5CL8 RELATED DB: PDB REMARK 900 RELATED ID: 5CL9 RELATED DB: PDB REMARK 900 RELATED ID: 5CLA RELATED DB: PDB REMARK 900 RELATED ID: 5CLB RELATED DB: PDB REMARK 900 RELATED ID: 5CLC RELATED DB: PDB REMARK 900 RELATED ID: 5CLD RELATED DB: PDB REMARK 900 RELATED ID: 5CLE RELATED DB: PDB DBREF 5CL3 A 1 229 UNP R8GWR7 R8GWR7_BACCE 1 229 DBREF 5CL3 B 1 12 PDB 5CL3 5CL3 1 12 DBREF 5CL3 C 13 24 PDB 5CL3 5CL3 13 24 SEQADV 5CL3 GLY A -3 UNP R8GWR7 EXPRESSION TAG SEQADV 5CL3 PRO A -2 UNP R8GWR7 EXPRESSION TAG SEQADV 5CL3 VAL A -1 UNP R8GWR7 EXPRESSION TAG SEQADV 5CL3 PRO A 0 UNP R8GWR7 EXPRESSION TAG SEQRES 1 A 233 GLY PRO VAL PRO MET HIS PRO PHE VAL LYS ALA LEU GLN SEQRES 2 A 233 GLU HIS PHE THR ALA HIS GLN ASN PRO GLU LYS ALA GLU SEQRES 3 A 233 PRO MET ALA ARG TYR MET LYS ASN HIS PHE LEU PHE LEU SEQRES 4 A 233 GLY ILE GLN THR PRO GLU ARG ARG GLN LEU LEU LYS ASP SEQRES 5 A 233 ILE ILE GLN ILE HIS THR LEU PRO ASP GLN LYS ASP PHE SEQRES 6 A 233 GLN ILE ILE ILE ARG GLU LEU TRP ASP LEU PRO GLU ARG SEQRES 7 A 233 GLU PHE GLN ALA ALA ALA LEU ASP ILE MET GLN LYS TYR SEQRES 8 A 233 LYS LYS HIS ILE ASN GLU THR HIS ILE PRO PHE LEU GLU SEQRES 9 A 233 GLU LEU ILE VAL THR LYS SER TRP TRP ASP SER VAL ASP SEQRES 10 A 233 SER ILE VAL PRO THR PHE LEU GLY ASP ILE PHE LEU LYS SEQRES 11 A 233 HIS PRO GLU LEU ILE SER ALA TYR ILE PRO LYS TRP ILE SEQRES 12 A 233 ALA SER ASP ASN ILE TRP LEU GLN ARG ALA ALA ILE LEU SEQRES 13 A 233 PHE GLN LEU LYS TYR LYS GLN LYS MET ASP GLU GLU LEU SEQRES 14 A 233 LEU PHE TRP ILE ILE GLY GLN LEU HIS SER SER LYS GLU SEQRES 15 A 233 PHE PHE ILE GLN LYS ALA ILE GLY TRP VAL LEU ARG GLU SEQRES 16 A 233 TYR ALA LYS THR ASN PRO ASP VAL VAL TRP GLU TYR VAL SEQRES 17 A 233 GLN ASN ASN GLU LEU ALA PRO LEU SER LYS ARG GLU ALA SEQRES 18 A 233 ILE LYS HIS ILE LYS GLN ASN TYR GLY ILE ASN ASN SEQRES 1 B 12 DC DC DC DG DA DZM DA DG DT DC DC DG SEQRES 1 C 12 DC DG DG DA DC DT DT DT DC DG DG DG HET DZM B 6 44 HETNAM DZM 3-DEAZA-3-METHYLADENINE HETSYN DZM 1-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO- HETSYN 2 DZM PENTOFURANOSYL)-7-METHYL-1H-IMIDAZO[4,5-C]PYRIDIN-4- HETSYN 3 DZM AMINE FORMUL 2 DZM C12 H17 N4 O6 P FORMUL 4 HOH *177(H2 O) HELIX 1 AA1 HIS A 2 HIS A 15 1 14 HELIX 2 AA2 ASN A 17 MET A 28 1 12 HELIX 3 AA3 GLN A 38 THR A 54 1 17 HELIX 4 AA4 ASP A 57 LYS A 59 5 3 HELIX 5 AA5 ASP A 60 LEU A 71 1 12 HELIX 6 AA6 GLU A 73 TYR A 87 1 15 HELIX 7 AA7 LYS A 88 ILE A 91 5 4 HELIX 8 AA8 ASN A 92 THR A 94 5 3 HELIX 9 AA9 HIS A 95 THR A 105 1 11 HELIX 10 AB1 TRP A 108 VAL A 116 1 9 HELIX 11 AB2 THR A 118 HIS A 127 1 10 HELIX 12 AB3 PRO A 128 ALA A 133 5 6 HELIX 13 AB4 TYR A 134 SER A 141 1 8 HELIX 14 AB5 ASN A 143 PHE A 153 1 11 HELIX 15 AB6 TYR A 157 MET A 161 5 5 HELIX 16 AB7 ASP A 162 HIS A 174 1 13 HELIX 17 AB8 GLU A 178 ALA A 193 1 16 HELIX 18 AB9 ASN A 196 ASN A 207 1 12 HELIX 19 AC1 ALA A 210 ILE A 218 1 9 HELIX 20 AC2 ILE A 221 GLY A 226 1 6 LINK O3' DA B 5 P ADZM B 6 1555 1555 1.61 LINK O3' DA B 5 P BDZM B 6 1555 1555 1.61 LINK O3'ADZM B 6 P DA B 7 1555 1555 1.61 LINK O3'BDZM B 6 P DA B 7 1555 1555 1.61 CRYST1 38.194 93.652 48.075 90.00 113.05 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026182 0.000000 0.011143 0.00000 SCALE2 0.000000 0.010678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022606 0.00000 CONECT 2043 2056 2057 CONECT 2056 2043 2080 2084 2098 CONECT 2057 2043 2081 2085 2099 CONECT 2058 2060 2068 CONECT 2059 2061 2069 CONECT 2060 2058 2062 CONECT 2061 2059 2063 CONECT 2062 2060 2064 2090 CONECT 2063 2061 2065 2091 CONECT 2064 2062 2066 2076 CONECT 2065 2063 2067 2077 CONECT 2066 2064 2068 2072 CONECT 2067 2065 2069 2073 CONECT 2068 2058 2066 2070 CONECT 2069 2059 2067 2071 CONECT 2070 2068 CONECT 2071 2069 CONECT 2072 2066 2074 CONECT 2073 2067 2075 CONECT 2074 2072 2076 CONECT 2075 2073 2077 CONECT 2076 2064 2074 2078 CONECT 2077 2065 2075 2079 CONECT 2078 2076 2082 2094 CONECT 2079 2077 2083 2095 CONECT 2080 2056 CONECT 2081 2057 CONECT 2082 2078 2086 CONECT 2083 2079 2087 CONECT 2084 2056 CONECT 2085 2057 CONECT 2086 2082 2088 2092 CONECT 2087 2083 2089 2093 CONECT 2088 2086 2100 CONECT 2089 2087 2100 CONECT 2090 2062 CONECT 2091 2063 CONECT 2092 2086 2094 2096 CONECT 2093 2087 2095 2097 CONECT 2094 2078 2092 CONECT 2095 2079 2093 CONECT 2096 2092 2098 CONECT 2097 2093 2099 CONECT 2098 2056 2096 CONECT 2099 2057 2097 CONECT 2100 2088 2089 MASTER 430 0 1 20 0 0 0 6 2615 3 46 20 END