HEADER HYDROLASE/DNA 16-JUL-15 5CL9 TITLE ALKYLPURINE DNA GLYCOSYLASE ALKD BOUND TO DNA CONTAINING AN ABASIC TITLE 2 SITE AND A FREE NUCLEOBASE (100% PRODUCT AT 240 HOURS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKD; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*CP*CP*GP*AP*(ORP)P*AP*GP*TP*CP*CP*G)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*CP*GP*GP*AP*CP*TP*TP*TP*CP*GP*GP*G)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 ATCC: 14579; SOURCE 5 GENE: IKE_03968; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBG103; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS DNA GLYCOSYLASE, HEAT-LIKE REPEAT, PROTEIN-DNA COMPLEX, HYDROLASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.A.MULLINS,B.F.EICHMAN REVDAT 6 27-SEP-23 5CL9 1 REMARK REVDAT 5 27-NOV-19 5CL9 1 REMARK REVDAT 4 13-SEP-17 5CL9 1 JRNL REMARK REVDAT 3 25-NOV-15 5CL9 1 JRNL REVDAT 2 18-NOV-15 5CL9 1 JRNL REVDAT 1 28-OCT-15 5CL9 0 JRNL AUTH E.A.MULLINS,R.SHI,Z.D.PARSONS,P.K.YUEN,S.S.DAVID,Y.IGARASHI, JRNL AUTH 2 B.F.EICHMAN JRNL TITL THE DNA GLYCOSYLASE ALKD USES A NON-BASE-FLIPPING MECHANISM JRNL TITL 2 TO EXCISE BULKY LESIONS. JRNL REF NATURE V. 527 254 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 26524531 JRNL DOI 10.1038/NATURE15728 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 45352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.410 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.0291 - 3.7048 0.97 3067 146 0.1388 0.1663 REMARK 3 2 3.7048 - 2.9411 1.00 3139 145 0.1519 0.1877 REMARK 3 3 2.9411 - 2.5694 1.00 3117 139 0.1701 0.1795 REMARK 3 4 2.5694 - 2.3346 1.00 3113 144 0.1641 0.1844 REMARK 3 5 2.3346 - 2.1673 1.00 3115 144 0.1567 0.1799 REMARK 3 6 2.1673 - 2.0395 1.00 3112 145 0.1604 0.1846 REMARK 3 7 2.0395 - 1.9374 1.00 3075 146 0.1661 0.2155 REMARK 3 8 1.9374 - 1.8530 1.00 3121 141 0.1718 0.1916 REMARK 3 9 1.8530 - 1.7817 1.00 3080 141 0.1775 0.1993 REMARK 3 10 1.7817 - 1.7202 1.00 3101 137 0.1844 0.2123 REMARK 3 11 1.7202 - 1.6664 1.00 3091 153 0.1835 0.2127 REMARK 3 12 1.6664 - 1.6188 1.00 3118 142 0.1953 0.2289 REMARK 3 13 1.6188 - 1.5762 1.00 3090 141 0.2135 0.2454 REMARK 3 14 1.5762 - 1.5377 0.97 3015 134 0.2270 0.2679 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2571 REMARK 3 ANGLE : 0.972 3587 REMARK 3 CHIRALITY : 0.041 386 REMARK 3 PLANARITY : 0.006 372 REMARK 3 DIHEDRAL : 17.959 990 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.8897 -21.2504 21.4202 REMARK 3 T TENSOR REMARK 3 T11: 0.2936 T22: 0.1735 REMARK 3 T33: 0.2779 T12: 0.0138 REMARK 3 T13: -0.0570 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.7468 L22: 6.4274 REMARK 3 L33: 2.8187 L12: -1.2917 REMARK 3 L13: -1.4906 L23: 4.1200 REMARK 3 S TENSOR REMARK 3 S11: 0.1507 S12: 0.0664 S13: -0.6307 REMARK 3 S21: 0.2669 S22: -0.1407 S23: -0.0330 REMARK 3 S31: 0.7274 S32: -0.0335 S33: -0.0851 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.5066 -7.3426 25.9949 REMARK 3 T TENSOR REMARK 3 T11: 0.2149 T22: 0.2839 REMARK 3 T33: 0.2081 T12: 0.0083 REMARK 3 T13: 0.0145 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 6.0024 L22: 3.2840 REMARK 3 L33: 7.9498 L12: -0.6212 REMARK 3 L13: 4.9510 L23: -1.2290 REMARK 3 S TENSOR REMARK 3 S11: -0.2189 S12: -0.5029 S13: 0.2816 REMARK 3 S21: 0.1047 S22: 0.1221 S23: 0.1944 REMARK 3 S31: -0.2751 S32: -0.7483 S33: 0.0857 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7951 -11.2879 19.6298 REMARK 3 T TENSOR REMARK 3 T11: 0.1921 T22: 0.2223 REMARK 3 T33: 0.2190 T12: -0.0394 REMARK 3 T13: 0.0085 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 9.0297 L22: 3.8521 REMARK 3 L33: 6.2028 L12: -5.3213 REMARK 3 L13: -1.8152 L23: 3.0116 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: -0.0267 S13: 0.0713 REMARK 3 S21: -0.0411 S22: 0.1749 S23: -0.5525 REMARK 3 S31: -0.0112 S32: 0.6411 S33: -0.1591 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6585 -20.5260 10.7970 REMARK 3 T TENSOR REMARK 3 T11: 0.2734 T22: 0.1861 REMARK 3 T33: 0.2460 T12: 0.0046 REMARK 3 T13: -0.0334 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 3.8628 L22: 3.5374 REMARK 3 L33: 5.8464 L12: -1.3027 REMARK 3 L13: 0.0647 L23: 2.1143 REMARK 3 S TENSOR REMARK 3 S11: 0.0681 S12: 0.3861 S13: -0.2652 REMARK 3 S21: -0.0219 S22: 0.0557 S23: -0.2243 REMARK 3 S31: 0.4784 S32: 0.1981 S33: -0.0542 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.7840 -10.5226 2.5919 REMARK 3 T TENSOR REMARK 3 T11: 0.1682 T22: 0.1807 REMARK 3 T33: 0.1768 T12: -0.0276 REMARK 3 T13: -0.0087 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.5368 L22: 0.7984 REMARK 3 L33: 3.1690 L12: -0.4078 REMARK 3 L13: 0.8477 L23: -0.3275 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: 0.0757 S13: -0.0301 REMARK 3 S21: -0.0481 S22: 0.0157 S23: -0.0358 REMARK 3 S31: 0.0081 S32: 0.1774 S33: -0.0245 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.7322 -0.2877 -1.3182 REMARK 3 T TENSOR REMARK 3 T11: 0.1485 T22: 0.1253 REMARK 3 T33: 0.1273 T12: -0.0089 REMARK 3 T13: -0.0047 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 4.1591 L22: 6.0602 REMARK 3 L33: 6.3853 L12: 1.0430 REMARK 3 L13: -1.2318 L23: -2.2864 REMARK 3 S TENSOR REMARK 3 S11: 0.0466 S12: 0.0239 S13: 0.0917 REMARK 3 S21: -0.2263 S22: -0.0729 S23: -0.3000 REMARK 3 S31: -0.2836 S32: 0.2187 S33: 0.0070 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.5243 7.0365 -1.2508 REMARK 3 T TENSOR REMARK 3 T11: 0.1682 T22: 0.1249 REMARK 3 T33: 0.1309 T12: 0.0117 REMARK 3 T13: 0.0122 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 2.2731 L22: 3.4576 REMARK 3 L33: 1.9126 L12: 0.0538 REMARK 3 L13: 0.5679 L23: 0.4430 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: 0.0502 S13: 0.1815 REMARK 3 S21: -0.2381 S22: 0.0125 S23: -0.0147 REMARK 3 S31: -0.2838 S32: -0.0074 S33: 0.0020 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.2307 16.5677 3.8262 REMARK 3 T TENSOR REMARK 3 T11: 0.2728 T22: 0.2135 REMARK 3 T33: 0.2217 T12: 0.0147 REMARK 3 T13: 0.0034 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 2.6526 L22: 7.8938 REMARK 3 L33: 2.8425 L12: 0.4682 REMARK 3 L13: -0.2122 L23: -0.9886 REMARK 3 S TENSOR REMARK 3 S11: -0.0241 S12: -0.1366 S13: 0.1723 REMARK 3 S21: 0.3768 S22: -0.0199 S23: -0.0207 REMARK 3 S31: -0.2987 S32: 0.0418 S33: 0.0759 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.9257 9.8722 18.8089 REMARK 3 T TENSOR REMARK 3 T11: 0.3823 T22: 0.4707 REMARK 3 T33: 0.4636 T12: 0.0786 REMARK 3 T13: -0.0599 T23: -0.1223 REMARK 3 L TENSOR REMARK 3 L11: 1.4097 L22: 3.8035 REMARK 3 L33: 3.2279 L12: -1.2273 REMARK 3 L13: 0.2982 L23: -0.1268 REMARK 3 S TENSOR REMARK 3 S11: -0.3972 S12: -0.7300 S13: 0.8444 REMARK 3 S21: 0.4163 S22: 0.3068 S23: 0.1441 REMARK 3 S31: -0.2404 S32: 0.0783 S33: -0.0038 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.8812 14.2347 19.2756 REMARK 3 T TENSOR REMARK 3 T11: 0.4308 T22: 0.8176 REMARK 3 T33: 0.9478 T12: 0.0849 REMARK 3 T13: -0.0217 T23: -0.2117 REMARK 3 L TENSOR REMARK 3 L11: 3.8466 L22: 3.0045 REMARK 3 L33: 2.8417 L12: -2.0789 REMARK 3 L13: 1.7932 L23: -2.9114 REMARK 3 S TENSOR REMARK 3 S11: -0.6647 S12: 0.8380 S13: 1.2250 REMARK 3 S21: 0.5532 S22: 0.3327 S23: -0.4037 REMARK 3 S31: -0.5401 S32: -0.2677 S33: 0.2624 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 7 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.4225 5.6526 16.3614 REMARK 3 T TENSOR REMARK 3 T11: 0.4833 T22: 0.5613 REMARK 3 T33: 0.6340 T12: 0.0865 REMARK 3 T13: 0.1208 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 2.4126 L22: 2.3149 REMARK 3 L33: 4.8692 L12: 2.2620 REMARK 3 L13: -1.3460 L23: -1.5063 REMARK 3 S TENSOR REMARK 3 S11: -0.3305 S12: -0.6194 S13: 0.9870 REMARK 3 S21: -0.5324 S22: 0.2877 S23: -1.2511 REMARK 3 S31: 0.5378 S32: 1.0290 S33: 0.2501 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CL9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45394 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.538 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.032 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3BVS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% W/V PEG4000, 42 MM SODIUM ACETATE, REMARK 280 PH 4.6, 85 MM AMMONIUM ACETATE, 5% V/V GLYCEROL, PH 5.7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.43450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLU A 230 REMARK 465 LYS A 231 REMARK 465 ILE A 232 REMARK 465 GLY A 233 REMARK 465 GLU A 234 REMARK 465 THR A 235 REMARK 465 LEU A 236 REMARK 465 SER A 237 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 17 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 54 154.50 66.60 REMARK 500 THR A 118 -72.84 -95.22 REMARK 500 TYR A 134 -44.97 -131.84 REMARK 500 LYS A 158 -122.43 51.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 54K B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CL3 RELATED DB: PDB REMARK 900 RELATED ID: 5CL4 RELATED DB: PDB REMARK 900 RELATED ID: 5CL5 RELATED DB: PDB REMARK 900 RELATED ID: 5CL6 RELATED DB: PDB REMARK 900 RELATED ID: 5CL7 RELATED DB: PDB REMARK 900 RELATED ID: 5CL8 RELATED DB: PDB REMARK 900 RELATED ID: 5CLA RELATED DB: PDB REMARK 900 RELATED ID: 5CLB RELATED DB: PDB REMARK 900 RELATED ID: 5CLC RELATED DB: PDB REMARK 900 RELATED ID: 5CLD RELATED DB: PDB REMARK 900 RELATED ID: 5CLE RELATED DB: PDB DBREF 5CL9 A 1 237 UNP R8GWR7 R8GWR7_BACCE 1 237 DBREF 5CL9 B 1 12 PDB 5CL9 5CL9 1 12 DBREF 5CL9 C 13 24 PDB 5CL9 5CL9 13 24 SEQADV 5CL9 GLY A -3 UNP R8GWR7 EXPRESSION TAG SEQADV 5CL9 PRO A -2 UNP R8GWR7 EXPRESSION TAG SEQADV 5CL9 VAL A -1 UNP R8GWR7 EXPRESSION TAG SEQADV 5CL9 PRO A 0 UNP R8GWR7 EXPRESSION TAG SEQRES 1 A 241 GLY PRO VAL PRO MET HIS PRO PHE VAL LYS ALA LEU GLN SEQRES 2 A 241 GLU HIS PHE THR ALA HIS GLN ASN PRO GLU LYS ALA GLU SEQRES 3 A 241 PRO MET ALA ARG TYR MET LYS ASN HIS PHE LEU PHE LEU SEQRES 4 A 241 GLY ILE GLN THR PRO GLU ARG ARG GLN LEU LEU LYS ASP SEQRES 5 A 241 ILE ILE GLN ILE HIS THR LEU PRO ASP GLN LYS ASP PHE SEQRES 6 A 241 GLN ILE ILE ILE ARG GLU LEU TRP ASP LEU PRO GLU ARG SEQRES 7 A 241 GLU PHE GLN ALA ALA ALA LEU ASP ILE MET GLN LYS TYR SEQRES 8 A 241 LYS LYS HIS ILE ASN GLU THR HIS ILE PRO PHE LEU GLU SEQRES 9 A 241 GLU LEU ILE VAL THR LYS SER TRP TRP ASP SER VAL ASP SEQRES 10 A 241 SER ILE VAL PRO THR PHE LEU GLY ASP ILE PHE LEU LYS SEQRES 11 A 241 HIS PRO GLU LEU ILE SER ALA TYR ILE PRO LYS TRP ILE SEQRES 12 A 241 ALA SER ASP ASN ILE TRP LEU GLN ARG ALA ALA ILE LEU SEQRES 13 A 241 PHE GLN LEU LYS TYR LYS GLN LYS MET ASP GLU GLU LEU SEQRES 14 A 241 LEU PHE TRP ILE ILE GLY GLN LEU HIS SER SER LYS GLU SEQRES 15 A 241 PHE PHE ILE GLN LYS ALA ILE GLY TRP VAL LEU ARG GLU SEQRES 16 A 241 TYR ALA LYS THR ASN PRO ASP VAL VAL TRP GLU TYR VAL SEQRES 17 A 241 GLN ASN ASN GLU LEU ALA PRO LEU SER LYS ARG GLU ALA SEQRES 18 A 241 ILE LYS HIS ILE LYS GLN ASN TYR GLY ILE ASN ASN GLU SEQRES 19 A 241 LYS ILE GLY GLU THR LEU SER SEQRES 1 B 12 DC DC DC DG DA ORP DA DG DT DC DC DG SEQRES 1 C 12 DC DG DG DA DC DT DT DT DC DG DG DG HET ORP B 6 12 HET 54K B 101 11 HETNAM ORP 2-DEOXY-5-PHOSPHONO-RIBOSE HETNAM 54K 7-METHYL-3H-IMIDAZO[4,5-C]PYRIDIN-4-AMINE HETSYN 54K 3-DEAZA-3-METHYLADENINE FORMUL 2 ORP C5 H11 O7 P FORMUL 4 54K C7 H8 N4 FORMUL 5 HOH *248(H2 O) HELIX 1 AA1 HIS A 2 HIS A 15 1 14 HELIX 2 AA2 ASN A 17 MET A 28 1 12 HELIX 3 AA3 GLN A 38 THR A 54 1 17 HELIX 4 AA4 ASP A 57 LYS A 59 5 3 HELIX 5 AA5 ASP A 60 ASP A 70 1 11 HELIX 6 AA6 GLU A 73 TYR A 87 1 15 HELIX 7 AA7 LYS A 88 ILE A 91 5 4 HELIX 8 AA8 ASN A 92 THR A 94 5 3 HELIX 9 AA9 HIS A 95 VAL A 104 1 10 HELIX 10 AB1 TRP A 108 VAL A 116 1 9 HELIX 11 AB2 THR A 118 HIS A 127 1 10 HELIX 12 AB3 PRO A 128 ALA A 133 5 6 HELIX 13 AB4 TYR A 134 SER A 141 1 8 HELIX 14 AB5 ASN A 143 PHE A 153 1 11 HELIX 15 AB6 TYR A 157 MET A 161 5 5 HELIX 16 AB7 ASP A 162 HIS A 174 1 13 HELIX 17 AB8 GLU A 178 ALA A 193 1 16 HELIX 18 AB9 ASN A 196 ASN A 207 1 12 HELIX 19 AC1 ALA A 210 ILE A 218 1 9 HELIX 20 AC2 ILE A 221 GLY A 226 1 6 LINK O3' DA B 5 P ORP B 6 1555 1555 1.61 LINK O3 ORP B 6 P DA B 7 1555 1555 1.60 SITE 1 AC1 8 TYR A 27 DA B 5 DA B 7 HOH B 208 SITE 2 AC1 8 HOH B 209 DT C 18 DT C 19 DT C 20 CRYST1 37.896 92.869 48.492 90.00 113.77 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026388 0.000000 0.011621 0.00000 SCALE2 0.000000 0.010768 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022533 0.00000