data_5CLA # _entry.id 5CLA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5CLA pdb_00005cla 10.2210/pdb5cla/pdb WWPDB D_1000211809 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 5CL3 unspecified PDB . 5CL4 unspecified PDB . 5CL5 unspecified PDB . 5CL6 unspecified PDB . 5CL7 unspecified PDB . 5CL8 unspecified PDB . 5CL9 unspecified PDB . 5CLB unspecified PDB . 5CLC unspecified PDB . 5CLD unspecified PDB . 5CLE unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5CLA _pdbx_database_status.recvd_initial_deposition_date 2015-07-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mullins, E.A.' 1 'Eichman, B.F.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 527 _citation.language ? _citation.page_first 254 _citation.page_last 258 _citation.title 'The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nature15728 _citation.pdbx_database_id_PubMed 26524531 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mullins, E.A.' 1 ? primary 'Shi, R.' 2 ? primary 'Parsons, Z.D.' 3 ? primary 'Yuen, P.K.' 4 ? primary 'David, S.S.' 5 ? primary 'Igarashi, Y.' 6 ? primary 'Eichman, B.F.' 7 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 112.610 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5CLA _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.427 _cell.length_a_esd ? _cell.length_b 93.082 _cell.length_b_esd ? _cell.length_c 48.045 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CLA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man AlkD 28578.043 1 3.2.2.- ? ? ? 2 polymer syn ;DNA (5'-D(*CP*CP*CP*GP*AP*(ORP)P*AP*GP*TP*CP*CP*G)-3') ; 3515.270 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*CP*GP*GP*AP*CP*TP*TP*TP*CP*GP*GP*G)-3') ; 3694.402 1 ? ? ? ? 4 non-polymer syn '7-methyl-3H-imidazo[4,5-c]pyridin-4-amine' 148.165 1 ? ? ? ? 5 water nat water 18.015 400 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPVPMHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREF QAAALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLK YKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNYGINNEKIGETL S ; ;GPVPMHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREF QAAALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLK YKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNYGINNEKIGETL S ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DC)(DC)(DG)(DA)(ORP)(DA)(DG)(DT)(DC)(DC)(DG)' CCCGAXAGTCCG B ? 3 polydeoxyribonucleotide no no '(DC)(DG)(DG)(DA)(DC)(DT)(DT)(DT)(DC)(DG)(DG)(DG)' CGGACTTTCGGG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 VAL n 1 4 PRO n 1 5 MET n 1 6 HIS n 1 7 PRO n 1 8 PHE n 1 9 VAL n 1 10 LYS n 1 11 ALA n 1 12 LEU n 1 13 GLN n 1 14 GLU n 1 15 HIS n 1 16 PHE n 1 17 THR n 1 18 ALA n 1 19 HIS n 1 20 GLN n 1 21 ASN n 1 22 PRO n 1 23 GLU n 1 24 LYS n 1 25 ALA n 1 26 GLU n 1 27 PRO n 1 28 MET n 1 29 ALA n 1 30 ARG n 1 31 TYR n 1 32 MET n 1 33 LYS n 1 34 ASN n 1 35 HIS n 1 36 PHE n 1 37 LEU n 1 38 PHE n 1 39 LEU n 1 40 GLY n 1 41 ILE n 1 42 GLN n 1 43 THR n 1 44 PRO n 1 45 GLU n 1 46 ARG n 1 47 ARG n 1 48 GLN n 1 49 LEU n 1 50 LEU n 1 51 LYS n 1 52 ASP n 1 53 ILE n 1 54 ILE n 1 55 GLN n 1 56 ILE n 1 57 HIS n 1 58 THR n 1 59 LEU n 1 60 PRO n 1 61 ASP n 1 62 GLN n 1 63 LYS n 1 64 ASP n 1 65 PHE n 1 66 GLN n 1 67 ILE n 1 68 ILE n 1 69 ILE n 1 70 ARG n 1 71 GLU n 1 72 LEU n 1 73 TRP n 1 74 ASP n 1 75 LEU n 1 76 PRO n 1 77 GLU n 1 78 ARG n 1 79 GLU n 1 80 PHE n 1 81 GLN n 1 82 ALA n 1 83 ALA n 1 84 ALA n 1 85 LEU n 1 86 ASP n 1 87 ILE n 1 88 MET n 1 89 GLN n 1 90 LYS n 1 91 TYR n 1 92 LYS n 1 93 LYS n 1 94 HIS n 1 95 ILE n 1 96 ASN n 1 97 GLU n 1 98 THR n 1 99 HIS n 1 100 ILE n 1 101 PRO n 1 102 PHE n 1 103 LEU n 1 104 GLU n 1 105 GLU n 1 106 LEU n 1 107 ILE n 1 108 VAL n 1 109 THR n 1 110 LYS n 1 111 SER n 1 112 TRP n 1 113 TRP n 1 114 ASP n 1 115 SER n 1 116 VAL n 1 117 ASP n 1 118 SER n 1 119 ILE n 1 120 VAL n 1 121 PRO n 1 122 THR n 1 123 PHE n 1 124 LEU n 1 125 GLY n 1 126 ASP n 1 127 ILE n 1 128 PHE n 1 129 LEU n 1 130 LYS n 1 131 HIS n 1 132 PRO n 1 133 GLU n 1 134 LEU n 1 135 ILE n 1 136 SER n 1 137 ALA n 1 138 TYR n 1 139 ILE n 1 140 PRO n 1 141 LYS n 1 142 TRP n 1 143 ILE n 1 144 ALA n 1 145 SER n 1 146 ASP n 1 147 ASN n 1 148 ILE n 1 149 TRP n 1 150 LEU n 1 151 GLN n 1 152 ARG n 1 153 ALA n 1 154 ALA n 1 155 ILE n 1 156 LEU n 1 157 PHE n 1 158 GLN n 1 159 LEU n 1 160 LYS n 1 161 TYR n 1 162 LYS n 1 163 GLN n 1 164 LYS n 1 165 MET n 1 166 ASP n 1 167 GLU n 1 168 GLU n 1 169 LEU n 1 170 LEU n 1 171 PHE n 1 172 TRP n 1 173 ILE n 1 174 ILE n 1 175 GLY n 1 176 GLN n 1 177 LEU n 1 178 HIS n 1 179 SER n 1 180 SER n 1 181 LYS n 1 182 GLU n 1 183 PHE n 1 184 PHE n 1 185 ILE n 1 186 GLN n 1 187 LYS n 1 188 ALA n 1 189 ILE n 1 190 GLY n 1 191 TRP n 1 192 VAL n 1 193 LEU n 1 194 ARG n 1 195 GLU n 1 196 TYR n 1 197 ALA n 1 198 LYS n 1 199 THR n 1 200 ASN n 1 201 PRO n 1 202 ASP n 1 203 VAL n 1 204 VAL n 1 205 TRP n 1 206 GLU n 1 207 TYR n 1 208 VAL n 1 209 GLN n 1 210 ASN n 1 211 ASN n 1 212 GLU n 1 213 LEU n 1 214 ALA n 1 215 PRO n 1 216 LEU n 1 217 SER n 1 218 LYS n 1 219 ARG n 1 220 GLU n 1 221 ALA n 1 222 ILE n 1 223 LYS n 1 224 HIS n 1 225 ILE n 1 226 LYS n 1 227 GLN n 1 228 ASN n 1 229 TYR n 1 230 GLY n 1 231 ILE n 1 232 ASN n 1 233 ASN n 1 234 GLU n 1 235 LYS n 1 236 ILE n 1 237 GLY n 1 238 GLU n 1 239 THR n 1 240 LEU n 1 241 SER n 2 1 DC n 2 2 DC n 2 3 DC n 2 4 DG n 2 5 DA n 2 6 ORP n 2 7 DA n 2 8 DG n 2 9 DT n 2 10 DC n 2 11 DC n 2 12 DG n 3 1 DC n 3 2 DG n 3 3 DG n 3 4 DA n 3 5 DC n 3 6 DT n 3 7 DT n 3 8 DT n 3 9 DC n 3 10 DG n 3 11 DG n 3 12 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 241 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene IKE_03968 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus cereus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1396 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 14579 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HMS174 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pBG103 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 12 'synthetic construct' ? 32630 ? 3 1 sample 1 12 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP R8GWR7_BACCE R8GWR7 ? 1 ;MHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAAA LDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYKQK MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNYGINNEKIGETLS ; 1 2 PDB 5CLA 5CLA ? 2 ? 1 3 PDB 5CLA 5CLA ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5CLA A 5 ? 241 ? R8GWR7 1 ? 237 ? 1 237 2 2 5CLA B 1 ? 12 ? 5CLA 1 ? 12 ? 1 12 3 3 5CLA C 1 ? 12 ? 5CLA 13 ? 24 ? 13 24 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5CLA GLY A 1 ? UNP R8GWR7 ? ? 'expression tag' -3 1 1 5CLA PRO A 2 ? UNP R8GWR7 ? ? 'expression tag' -2 2 1 5CLA VAL A 3 ? UNP R8GWR7 ? ? 'expression tag' -1 3 1 5CLA PRO A 4 ? UNP R8GWR7 ? ? 'expression tag' 0 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 54K non-polymer . '7-methyl-3H-imidazo[4,5-c]pyridin-4-amine' 3-deaza-3-methyladenine 'C7 H8 N4' 148.165 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 ORP saccharide . 2-DEOXY-5-PHOSPHONO-RIBOSE ? 'C5 H11 O7 P' 214.110 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5CLA _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '15% w/v PEG4000, 42 mM sodium acetate, pH 4.6, 85 mM ammonium acetate, 5% v/v glycerol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-08-15 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'diamond(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97872 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 13.690 _reflns.entry_id 5CLA _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.540 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 44689 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.700 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 41.066 _reflns.pdbx_netI_over_sigmaI 20.900 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.351 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.053 _reflns.pdbx_Rpim_I_all 0.019 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 344562 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.540 1.600 ? 16.594 ? ? ? 4231 ? 92.300 ? ? ? ? 0.138 ? ? ? ? ? ? ? ? 7.400 ? 1.171 ? ? 0.149 0.054 0 1 1 0.994 ? 1.600 1.660 ? ? ? ? ? 4420 ? 96.200 ? ? ? ? 0.110 ? ? ? ? ? ? ? ? 7.600 ? 1.252 ? ? 0.118 0.043 0 2 1 0.995 ? 1.660 1.730 ? ? ? ? ? 4429 ? 96.600 ? ? ? ? 0.089 ? ? ? ? ? ? ? ? 7.700 ? 1.359 ? ? 0.096 0.035 0 3 1 0.996 ? 1.730 1.830 ? ? ? ? ? 4455 ? 96.600 ? ? ? ? 0.075 ? ? ? ? ? ? ? ? 7.700 ? 1.445 ? ? 0.081 0.029 0 4 1 0.997 ? 1.830 1.940 ? ? ? ? ? 4473 ? 97.100 ? ? ? ? 0.065 ? ? ? ? ? ? ? ? 7.800 ? 1.641 ? ? 0.070 0.025 0 5 1 0.997 ? 1.940 2.090 ? ? ? ? ? 4487 ? 97.600 ? ? ? ? 0.055 ? ? ? ? ? ? ? ? 7.800 ? 1.524 ? ? 0.058 0.021 0 6 1 0.998 ? 2.090 2.300 ? ? ? ? ? 4495 ? 97.900 ? ? ? ? 0.050 ? ? ? ? ? ? ? ? 7.800 ? 1.363 ? ? 0.054 0.019 0 7 1 0.998 ? 2.300 2.630 ? ? ? ? ? 4536 ? 98.400 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? 7.800 ? 1.213 ? ? 0.053 0.019 0 8 1 0.998 ? 2.630 3.320 ? ? ? ? ? 4579 ? 98.900 ? ? ? ? 0.048 ? ? ? ? ? ? ? ? 7.800 ? 1.378 ? ? 0.051 0.018 0 9 1 0.998 ? 3.320 50.000 ? ? ? ? ? 4584 ? 97.500 ? ? ? ? 0.043 ? ? ? ? ? ? ? ? 7.600 ? 1.146 ? ? 0.046 0.017 0 10 1 0.998 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 88.700 _refine.B_iso_mean 21.8958 _refine.B_iso_min 8.020 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5CLA _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.5410 _refine.ls_d_res_low 35.0430 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 44651 _refine.ls_number_reflns_R_free 1997 _refine.ls_number_reflns_R_work 42654 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.1100 _refine.ls_percent_reflns_R_free 4.4700 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1490 _refine.ls_R_factor_R_free 0.1694 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1480 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.370 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 3BVS' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 16.9200 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.5410 _refine_hist.d_res_low 35.0430 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 400 _refine_hist.number_atoms_total 2839 _refine_hist.pdbx_number_residues_total 255 _refine_hist.pdbx_B_iso_mean_ligand 13.61 _refine_hist.pdbx_B_iso_mean_solvent 33.51 _refine_hist.pdbx_number_atoms_protein 1951 _refine_hist.pdbx_number_atoms_nucleic_acid 477 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 2587 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.041 ? 3614 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.043 ? 390 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 376 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 17.986 ? 1001 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.5407 1.5792 . . 132 2905 94.0000 4.3464 . . 0.1935 . 0.1472 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5792 1.6219 . . 143 3024 96.0000 4.5153 . . 0.1614 . 0.1474 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6219 1.6697 . . 138 3034 96.0000 4.3506 . . 0.1477 . 0.1419 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6697 1.7236 . . 141 2995 97.0000 4.4962 . . 0.1922 . 0.1404 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7236 1.7852 . . 147 3005 96.0000 4.6637 . . 0.1842 . 0.1464 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7852 1.8566 . . 136 3045 97.0000 4.2754 . . 0.1671 . 0.1511 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8566 1.9411 . . 149 3059 97.0000 4.6446 . . 0.1839 . 0.1509 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9411 2.0434 . . 144 3042 97.0000 4.5198 . . 0.1935 . 0.1546 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0434 2.1715 . . 141 3054 98.0000 4.4131 . . 0.1695 . 0.1519 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1715 2.3391 . . 149 3067 98.0000 4.6331 . . 0.1583 . 0.1508 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3391 2.5744 . . 144 3109 98.0000 4.4267 . . 0.1929 . 0.1592 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5744 2.9468 . . 145 3089 99.0000 4.4836 . . 0.1723 . 0.1638 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9468 3.7120 . . 149 3125 99.0000 4.5510 . . 0.1752 . 0.1465 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7120 35.0519 . . 139 3101 97.0000 4.2901 . . 0.1395 . 0.1321 . . . . . . . . . . # _struct.entry_id 5CLA _struct.title 'Alkylpurine DNA glycosylase AlkD bound to DNA containing an abasic site and a free nucleobase (100% product at 360 hours)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5CLA _struct_keywords.text 'DNA glycosylase, HEAT-like repeat, protein-DNA complex, HYDROLASE-DNA complex' _struct_keywords.pdbx_keywords HYDROLASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 6 ? ALA A 18 ? HIS A 2 ALA A 14 1 ? 13 HELX_P HELX_P2 AA2 ASN A 21 ? MET A 32 ? ASN A 17 MET A 28 1 ? 12 HELX_P HELX_P3 AA3 GLN A 42 ? THR A 58 ? GLN A 38 THR A 54 1 ? 17 HELX_P HELX_P4 AA4 ASP A 61 ? LYS A 63 ? ASP A 57 LYS A 59 5 ? 3 HELX_P HELX_P5 AA5 ASP A 64 ? ASP A 74 ? ASP A 60 ASP A 70 1 ? 11 HELX_P HELX_P6 AA6 GLU A 77 ? TYR A 91 ? GLU A 73 TYR A 87 1 ? 15 HELX_P HELX_P7 AA7 LYS A 92 ? ILE A 95 ? LYS A 88 ILE A 91 5 ? 4 HELX_P HELX_P8 AA8 ASN A 96 ? THR A 98 ? ASN A 92 THR A 94 5 ? 3 HELX_P HELX_P9 AA9 HIS A 99 ? VAL A 108 ? HIS A 95 VAL A 104 1 ? 10 HELX_P HELX_P10 AB1 TRP A 112 ? VAL A 120 ? TRP A 108 VAL A 116 1 ? 9 HELX_P HELX_P11 AB2 THR A 122 ? HIS A 131 ? THR A 118 HIS A 127 1 ? 10 HELX_P HELX_P12 AB3 PRO A 132 ? ALA A 137 ? PRO A 128 ALA A 133 5 ? 6 HELX_P HELX_P13 AB4 TYR A 138 ? SER A 145 ? TYR A 134 SER A 141 1 ? 8 HELX_P HELX_P14 AB5 ASN A 147 ? PHE A 157 ? ASN A 143 PHE A 153 1 ? 11 HELX_P HELX_P15 AB6 TYR A 161 ? MET A 165 ? TYR A 157 MET A 161 5 ? 5 HELX_P HELX_P16 AB7 ASP A 166 ? HIS A 178 ? ASP A 162 HIS A 174 1 ? 13 HELX_P HELX_P17 AB8 GLU A 182 ? ALA A 197 ? GLU A 178 ALA A 193 1 ? 16 HELX_P HELX_P18 AB9 ASN A 200 ? ASN A 211 ? ASN A 196 ASN A 207 1 ? 12 HELX_P HELX_P19 AC1 ALA A 214 ? ILE A 222 ? ALA A 210 ILE A 218 1 ? 9 HELX_P HELX_P20 AC2 ILE A 225 ? GLY A 230 ? ILE A 221 GLY A 226 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DA 5 "O3'" ? ? ? 1_555 B ORP 6 P ? ? B DA 5 B ORP 6 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale2 covale one ? B ORP 6 O3 ? ? ? 1_555 B DA 7 P ? ? B ORP 6 B DA 7 1_555 ? ? ? ? ? ? ? 1.608 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 12 N1 ? ? B DC 1 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 12 O6 ? ? B DC 1 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 12 N2 ? ? B DC 1 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 2 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 2 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 2 C DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 10 N1 ? ? B DC 3 C DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 10 O6 ? ? B DC 3 C DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 3 C DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 9 N3 ? ? B DG 4 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 9 O2 ? ? B DG 4 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 9 N4 ? ? B DG 4 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 5 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 5 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 6 N3 ? ? B DA 7 C DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 6 O4 ? ? B DA 7 C DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 5 N3 ? ? B DG 8 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 5 O2 ? ? B DG 8 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 5 N4 ? ? B DG 8 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 9 C DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 9 C DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 10 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 10 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 10 C DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 2 N1 ? ? B DC 11 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 2 O6 ? ? B DC 11 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 2 N2 ? ? B DC 11 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 1 N3 ? ? B DG 12 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 1 O2 ? ? B DG 12 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 12 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id 54K _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'binding site for residue 54K B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 TYR A 31 ? TYR A 27 . ? 1_555 ? 2 AC1 9 DA B 5 ? DA B 5 . ? 1_555 ? 3 AC1 9 DA B 7 ? DA B 7 . ? 1_555 ? 4 AC1 9 HOH F . ? HOH B 214 . ? 1_555 ? 5 AC1 9 HOH F . ? HOH B 217 . ? 1_555 ? 6 AC1 9 DT C 6 ? DT C 18 . ? 1_555 ? 7 AC1 9 DT C 7 ? DT C 19 . ? 1_555 ? 8 AC1 9 DT C 8 ? DT C 20 . ? 1_555 ? 9 AC1 9 HOH G . ? HOH C 103 . ? 1_555 ? # _atom_sites.entry_id 5CLA _atom_sites.fract_transf_matrix[1][1] 0.026023 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010837 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010743 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022546 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 ? ? ? A . n A 1 3 VAL 3 -1 -1 VAL VAL A . n A 1 4 PRO 4 0 0 PRO PRO A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 HIS 6 2 2 HIS HIS A . n A 1 7 PRO 7 3 3 PRO PRO A . n A 1 8 PHE 8 4 4 PHE PHE A . n A 1 9 VAL 9 5 5 VAL VAL A . n A 1 10 LYS 10 6 6 LYS LYS A . n A 1 11 ALA 11 7 7 ALA ALA A . n A 1 12 LEU 12 8 8 LEU LEU A . n A 1 13 GLN 13 9 9 GLN GLN A . n A 1 14 GLU 14 10 10 GLU GLU A . n A 1 15 HIS 15 11 11 HIS HIS A . n A 1 16 PHE 16 12 12 PHE PHE A . n A 1 17 THR 17 13 13 THR THR A . n A 1 18 ALA 18 14 14 ALA ALA A . n A 1 19 HIS 19 15 15 HIS HIS A . n A 1 20 GLN 20 16 16 GLN GLN A . n A 1 21 ASN 21 17 17 ASN ASN A . n A 1 22 PRO 22 18 18 PRO PRO A . n A 1 23 GLU 23 19 19 GLU GLU A . n A 1 24 LYS 24 20 20 LYS LYS A . n A 1 25 ALA 25 21 21 ALA ALA A . n A 1 26 GLU 26 22 22 GLU GLU A . n A 1 27 PRO 27 23 23 PRO PRO A . n A 1 28 MET 28 24 24 MET MET A . n A 1 29 ALA 29 25 25 ALA ALA A . n A 1 30 ARG 30 26 26 ARG ARG A . n A 1 31 TYR 31 27 27 TYR TYR A . n A 1 32 MET 32 28 28 MET MET A . n A 1 33 LYS 33 29 29 LYS LYS A . n A 1 34 ASN 34 30 30 ASN ASN A . n A 1 35 HIS 35 31 31 HIS HIS A . n A 1 36 PHE 36 32 32 PHE PHE A . n A 1 37 LEU 37 33 33 LEU LEU A . n A 1 38 PHE 38 34 34 PHE PHE A . n A 1 39 LEU 39 35 35 LEU LEU A . n A 1 40 GLY 40 36 36 GLY GLY A . n A 1 41 ILE 41 37 37 ILE ILE A . n A 1 42 GLN 42 38 38 GLN GLN A . n A 1 43 THR 43 39 39 THR THR A . n A 1 44 PRO 44 40 40 PRO PRO A . n A 1 45 GLU 45 41 41 GLU GLU A . n A 1 46 ARG 46 42 42 ARG ARG A . n A 1 47 ARG 47 43 43 ARG ARG A . n A 1 48 GLN 48 44 44 GLN GLN A . n A 1 49 LEU 49 45 45 LEU LEU A . n A 1 50 LEU 50 46 46 LEU LEU A . n A 1 51 LYS 51 47 47 LYS LYS A . n A 1 52 ASP 52 48 48 ASP ASP A . n A 1 53 ILE 53 49 49 ILE ILE A . n A 1 54 ILE 54 50 50 ILE ILE A . n A 1 55 GLN 55 51 51 GLN GLN A . n A 1 56 ILE 56 52 52 ILE ILE A . n A 1 57 HIS 57 53 53 HIS HIS A . n A 1 58 THR 58 54 54 THR THR A . n A 1 59 LEU 59 55 55 LEU LEU A . n A 1 60 PRO 60 56 56 PRO PRO A . n A 1 61 ASP 61 57 57 ASP ASP A . n A 1 62 GLN 62 58 58 GLN GLN A . n A 1 63 LYS 63 59 59 LYS LYS A . n A 1 64 ASP 64 60 60 ASP ASP A . n A 1 65 PHE 65 61 61 PHE PHE A . n A 1 66 GLN 66 62 62 GLN GLN A . n A 1 67 ILE 67 63 63 ILE ILE A . n A 1 68 ILE 68 64 64 ILE ILE A . n A 1 69 ILE 69 65 65 ILE ILE A . n A 1 70 ARG 70 66 66 ARG ARG A . n A 1 71 GLU 71 67 67 GLU GLU A . n A 1 72 LEU 72 68 68 LEU LEU A . n A 1 73 TRP 73 69 69 TRP TRP A . n A 1 74 ASP 74 70 70 ASP ASP A . n A 1 75 LEU 75 71 71 LEU LEU A . n A 1 76 PRO 76 72 72 PRO PRO A . n A 1 77 GLU 77 73 73 GLU GLU A . n A 1 78 ARG 78 74 74 ARG ARG A . n A 1 79 GLU 79 75 75 GLU GLU A . n A 1 80 PHE 80 76 76 PHE PHE A . n A 1 81 GLN 81 77 77 GLN GLN A . n A 1 82 ALA 82 78 78 ALA ALA A . n A 1 83 ALA 83 79 79 ALA ALA A . n A 1 84 ALA 84 80 80 ALA ALA A . n A 1 85 LEU 85 81 81 LEU LEU A . n A 1 86 ASP 86 82 82 ASP ASP A . n A 1 87 ILE 87 83 83 ILE ILE A . n A 1 88 MET 88 84 84 MET MET A . n A 1 89 GLN 89 85 85 GLN GLN A . n A 1 90 LYS 90 86 86 LYS LYS A . n A 1 91 TYR 91 87 87 TYR TYR A . n A 1 92 LYS 92 88 88 LYS LYS A . n A 1 93 LYS 93 89 89 LYS LYS A . n A 1 94 HIS 94 90 90 HIS HIS A . n A 1 95 ILE 95 91 91 ILE ILE A . n A 1 96 ASN 96 92 92 ASN ASN A . n A 1 97 GLU 97 93 93 GLU GLU A . n A 1 98 THR 98 94 94 THR THR A . n A 1 99 HIS 99 95 95 HIS HIS A . n A 1 100 ILE 100 96 96 ILE ILE A . n A 1 101 PRO 101 97 97 PRO PRO A . n A 1 102 PHE 102 98 98 PHE PHE A . n A 1 103 LEU 103 99 99 LEU LEU A . n A 1 104 GLU 104 100 100 GLU GLU A . n A 1 105 GLU 105 101 101 GLU GLU A . n A 1 106 LEU 106 102 102 LEU LEU A . n A 1 107 ILE 107 103 103 ILE ILE A . n A 1 108 VAL 108 104 104 VAL VAL A . n A 1 109 THR 109 105 105 THR THR A . n A 1 110 LYS 110 106 106 LYS LYS A . n A 1 111 SER 111 107 107 SER SER A . n A 1 112 TRP 112 108 108 TRP TRP A . n A 1 113 TRP 113 109 109 TRP TRP A . n A 1 114 ASP 114 110 110 ASP ASP A . n A 1 115 SER 115 111 111 SER SER A . n A 1 116 VAL 116 112 112 VAL VAL A . n A 1 117 ASP 117 113 113 ASP ASP A . n A 1 118 SER 118 114 114 SER SER A . n A 1 119 ILE 119 115 115 ILE ILE A . n A 1 120 VAL 120 116 116 VAL VAL A . n A 1 121 PRO 121 117 117 PRO PRO A . n A 1 122 THR 122 118 118 THR THR A . n A 1 123 PHE 123 119 119 PHE PHE A . n A 1 124 LEU 124 120 120 LEU LEU A . n A 1 125 GLY 125 121 121 GLY GLY A . n A 1 126 ASP 126 122 122 ASP ASP A . n A 1 127 ILE 127 123 123 ILE ILE A . n A 1 128 PHE 128 124 124 PHE PHE A . n A 1 129 LEU 129 125 125 LEU LEU A . n A 1 130 LYS 130 126 126 LYS LYS A . n A 1 131 HIS 131 127 127 HIS HIS A . n A 1 132 PRO 132 128 128 PRO PRO A . n A 1 133 GLU 133 129 129 GLU GLU A . n A 1 134 LEU 134 130 130 LEU LEU A . n A 1 135 ILE 135 131 131 ILE ILE A . n A 1 136 SER 136 132 132 SER SER A . n A 1 137 ALA 137 133 133 ALA ALA A . n A 1 138 TYR 138 134 134 TYR TYR A . n A 1 139 ILE 139 135 135 ILE ILE A . n A 1 140 PRO 140 136 136 PRO PRO A . n A 1 141 LYS 141 137 137 LYS LYS A . n A 1 142 TRP 142 138 138 TRP TRP A . n A 1 143 ILE 143 139 139 ILE ILE A . n A 1 144 ALA 144 140 140 ALA ALA A . n A 1 145 SER 145 141 141 SER SER A . n A 1 146 ASP 146 142 142 ASP ASP A . n A 1 147 ASN 147 143 143 ASN ASN A . n A 1 148 ILE 148 144 144 ILE ILE A . n A 1 149 TRP 149 145 145 TRP TRP A . n A 1 150 LEU 150 146 146 LEU LEU A . n A 1 151 GLN 151 147 147 GLN GLN A . n A 1 152 ARG 152 148 148 ARG ARG A . n A 1 153 ALA 153 149 149 ALA ALA A . n A 1 154 ALA 154 150 150 ALA ALA A . n A 1 155 ILE 155 151 151 ILE ILE A . n A 1 156 LEU 156 152 152 LEU LEU A . n A 1 157 PHE 157 153 153 PHE PHE A . n A 1 158 GLN 158 154 154 GLN GLN A . n A 1 159 LEU 159 155 155 LEU LEU A . n A 1 160 LYS 160 156 156 LYS LYS A . n A 1 161 TYR 161 157 157 TYR TYR A . n A 1 162 LYS 162 158 158 LYS LYS A . n A 1 163 GLN 163 159 159 GLN GLN A . n A 1 164 LYS 164 160 160 LYS LYS A . n A 1 165 MET 165 161 161 MET MET A . n A 1 166 ASP 166 162 162 ASP ASP A . n A 1 167 GLU 167 163 163 GLU GLU A . n A 1 168 GLU 168 164 164 GLU GLU A . n A 1 169 LEU 169 165 165 LEU LEU A . n A 1 170 LEU 170 166 166 LEU LEU A . n A 1 171 PHE 171 167 167 PHE PHE A . n A 1 172 TRP 172 168 168 TRP TRP A . n A 1 173 ILE 173 169 169 ILE ILE A . n A 1 174 ILE 174 170 170 ILE ILE A . n A 1 175 GLY 175 171 171 GLY GLY A . n A 1 176 GLN 176 172 172 GLN GLN A . n A 1 177 LEU 177 173 173 LEU LEU A . n A 1 178 HIS 178 174 174 HIS HIS A . n A 1 179 SER 179 175 175 SER SER A . n A 1 180 SER 180 176 176 SER SER A . n A 1 181 LYS 181 177 177 LYS LYS A . n A 1 182 GLU 182 178 178 GLU GLU A . n A 1 183 PHE 183 179 179 PHE PHE A . n A 1 184 PHE 184 180 180 PHE PHE A . n A 1 185 ILE 185 181 181 ILE ILE A . n A 1 186 GLN 186 182 182 GLN GLN A . n A 1 187 LYS 187 183 183 LYS LYS A . n A 1 188 ALA 188 184 184 ALA ALA A . n A 1 189 ILE 189 185 185 ILE ILE A . n A 1 190 GLY 190 186 186 GLY GLY A . n A 1 191 TRP 191 187 187 TRP TRP A . n A 1 192 VAL 192 188 188 VAL VAL A . n A 1 193 LEU 193 189 189 LEU LEU A . n A 1 194 ARG 194 190 190 ARG ARG A . n A 1 195 GLU 195 191 191 GLU GLU A . n A 1 196 TYR 196 192 192 TYR TYR A . n A 1 197 ALA 197 193 193 ALA ALA A . n A 1 198 LYS 198 194 194 LYS LYS A . n A 1 199 THR 199 195 195 THR THR A . n A 1 200 ASN 200 196 196 ASN ASN A . n A 1 201 PRO 201 197 197 PRO PRO A . n A 1 202 ASP 202 198 198 ASP ASP A . n A 1 203 VAL 203 199 199 VAL VAL A . n A 1 204 VAL 204 200 200 VAL VAL A . n A 1 205 TRP 205 201 201 TRP TRP A . n A 1 206 GLU 206 202 202 GLU GLU A . n A 1 207 TYR 207 203 203 TYR TYR A . n A 1 208 VAL 208 204 204 VAL VAL A . n A 1 209 GLN 209 205 205 GLN GLN A . n A 1 210 ASN 210 206 206 ASN ASN A . n A 1 211 ASN 211 207 207 ASN ASN A . n A 1 212 GLU 212 208 208 GLU GLU A . n A 1 213 LEU 213 209 209 LEU LEU A . n A 1 214 ALA 214 210 210 ALA ALA A . n A 1 215 PRO 215 211 211 PRO PRO A . n A 1 216 LEU 216 212 212 LEU LEU A . n A 1 217 SER 217 213 213 SER SER A . n A 1 218 LYS 218 214 214 LYS LYS A . n A 1 219 ARG 219 215 215 ARG ARG A . n A 1 220 GLU 220 216 216 GLU GLU A . n A 1 221 ALA 221 217 217 ALA ALA A . n A 1 222 ILE 222 218 218 ILE ILE A . n A 1 223 LYS 223 219 219 LYS LYS A . n A 1 224 HIS 224 220 220 HIS HIS A . n A 1 225 ILE 225 221 221 ILE ILE A . n A 1 226 LYS 226 222 222 LYS LYS A . n A 1 227 GLN 227 223 223 GLN GLN A . n A 1 228 ASN 228 224 224 ASN ASN A . n A 1 229 TYR 229 225 225 TYR TYR A . n A 1 230 GLY 230 226 226 GLY GLY A . n A 1 231 ILE 231 227 227 ILE ILE A . n A 1 232 ASN 232 228 228 ASN ASN A . n A 1 233 ASN 233 229 229 ASN ASN A . n A 1 234 GLU 234 230 ? ? ? A . n A 1 235 LYS 235 231 ? ? ? A . n A 1 236 ILE 236 232 ? ? ? A . n A 1 237 GLY 237 233 ? ? ? A . n A 1 238 GLU 238 234 ? ? ? A . n A 1 239 THR 239 235 ? ? ? A . n A 1 240 LEU 240 236 ? ? ? A . n A 1 241 SER 241 237 ? ? ? A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DA 5 5 5 DA DA B . n B 2 6 ORP 6 6 6 ORP ORP B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DC 10 10 10 DC DC B . n B 2 11 DC 11 11 11 DC DC B . n B 2 12 DG 12 12 12 DG DG B . n C 3 1 DC 1 13 13 DC DC C . n C 3 2 DG 2 14 14 DG DG C . n C 3 3 DG 3 15 15 DG DG C . n C 3 4 DA 4 16 16 DA DA C . n C 3 5 DC 5 17 17 DC DC C . n C 3 6 DT 6 18 18 DT DT C . n C 3 7 DT 7 19 19 DT DT C . n C 3 8 DT 8 20 20 DT DT C . n C 3 9 DC 9 21 21 DC DC C . n C 3 10 DG 10 22 22 DG DG C . n C 3 11 DG 11 23 23 DG DG C . n C 3 12 DG 12 24 24 DG DG C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 54K 1 101 1 54K UNK B . E 5 HOH 1 301 306 HOH HOH A . E 5 HOH 2 302 518 HOH HOH A . E 5 HOH 3 303 192 HOH HOH A . E 5 HOH 4 304 378 HOH HOH A . E 5 HOH 5 305 125 HOH HOH A . E 5 HOH 6 306 245 HOH HOH A . E 5 HOH 7 307 118 HOH HOH A . E 5 HOH 8 308 282 HOH HOH A . E 5 HOH 9 309 311 HOH HOH A . E 5 HOH 10 310 143 HOH HOH A . E 5 HOH 11 311 418 HOH HOH A . E 5 HOH 12 312 135 HOH HOH A . E 5 HOH 13 313 390 HOH HOH A . E 5 HOH 14 314 303 HOH HOH A . E 5 HOH 15 315 495 HOH HOH A . E 5 HOH 16 316 105 HOH HOH A . E 5 HOH 17 317 437 HOH HOH A . E 5 HOH 18 318 39 HOH HOH A . E 5 HOH 19 319 40 HOH HOH A . E 5 HOH 20 320 74 HOH HOH A . E 5 HOH 21 321 35 HOH HOH A . E 5 HOH 22 322 127 HOH HOH A . E 5 HOH 23 323 331 HOH HOH A . E 5 HOH 24 324 121 HOH HOH A . E 5 HOH 25 325 20 HOH HOH A . E 5 HOH 26 326 1 HOH HOH A . E 5 HOH 27 327 511 HOH HOH A . E 5 HOH 28 328 70 HOH HOH A . E 5 HOH 29 329 130 HOH HOH A . E 5 HOH 30 330 463 HOH HOH A . E 5 HOH 31 331 493 HOH HOH A . E 5 HOH 32 332 3 HOH HOH A . E 5 HOH 33 333 525 HOH HOH A . E 5 HOH 34 334 167 HOH HOH A . E 5 HOH 35 335 28 HOH HOH A . E 5 HOH 36 336 279 HOH HOH A . E 5 HOH 37 337 110 HOH HOH A . E 5 HOH 38 338 30 HOH HOH A . E 5 HOH 39 339 64 HOH HOH A . E 5 HOH 40 340 29 HOH HOH A . E 5 HOH 41 341 260 HOH HOH A . E 5 HOH 42 342 385 HOH HOH A . E 5 HOH 43 343 42 HOH HOH A . E 5 HOH 44 344 75 HOH HOH A . E 5 HOH 45 345 18 HOH HOH A . E 5 HOH 46 346 19 HOH HOH A . E 5 HOH 47 347 34 HOH HOH A . E 5 HOH 48 348 95 HOH HOH A . E 5 HOH 49 349 133 HOH HOH A . E 5 HOH 50 350 22 HOH HOH A . E 5 HOH 51 351 98 HOH HOH A . E 5 HOH 52 352 142 HOH HOH A . E 5 HOH 53 353 398 HOH HOH A . E 5 HOH 54 354 330 HOH HOH A . E 5 HOH 55 355 455 HOH HOH A . E 5 HOH 56 356 10 HOH HOH A . E 5 HOH 57 357 256 HOH HOH A . E 5 HOH 58 358 520 HOH HOH A . E 5 HOH 59 359 111 HOH HOH A . E 5 HOH 60 360 2 HOH HOH A . E 5 HOH 61 361 65 HOH HOH A . E 5 HOH 62 362 44 HOH HOH A . E 5 HOH 63 363 278 HOH HOH A . E 5 HOH 64 364 393 HOH HOH A . E 5 HOH 65 365 280 HOH HOH A . E 5 HOH 66 366 48 HOH HOH A . E 5 HOH 67 367 96 HOH HOH A . E 5 HOH 68 368 60 HOH HOH A . E 5 HOH 69 369 26 HOH HOH A . E 5 HOH 70 370 137 HOH HOH A . E 5 HOH 71 371 21 HOH HOH A . E 5 HOH 72 372 487 HOH HOH A . E 5 HOH 73 373 352 HOH HOH A . E 5 HOH 74 374 85 HOH HOH A . E 5 HOH 75 375 244 HOH HOH A . E 5 HOH 76 376 266 HOH HOH A . E 5 HOH 77 377 496 HOH HOH A . E 5 HOH 78 378 490 HOH HOH A . E 5 HOH 79 379 323 HOH HOH A . E 5 HOH 80 380 494 HOH HOH A . E 5 HOH 81 381 37 HOH HOH A . E 5 HOH 82 382 196 HOH HOH A . E 5 HOH 83 383 175 HOH HOH A . E 5 HOH 84 384 277 HOH HOH A . E 5 HOH 85 385 117 HOH HOH A . E 5 HOH 86 386 69 HOH HOH A . E 5 HOH 87 387 53 HOH HOH A . E 5 HOH 88 388 23 HOH HOH A . E 5 HOH 89 389 119 HOH HOH A . E 5 HOH 90 390 141 HOH HOH A . E 5 HOH 91 391 291 HOH HOH A . E 5 HOH 92 392 328 HOH HOH A . E 5 HOH 93 393 340 HOH HOH A . E 5 HOH 94 394 80 HOH HOH A . E 5 HOH 95 395 218 HOH HOH A . E 5 HOH 96 396 7 HOH HOH A . E 5 HOH 97 397 476 HOH HOH A . E 5 HOH 98 398 326 HOH HOH A . E 5 HOH 99 399 89 HOH HOH A . E 5 HOH 100 400 453 HOH HOH A . E 5 HOH 101 401 413 HOH HOH A . E 5 HOH 102 402 129 HOH HOH A . E 5 HOH 103 403 134 HOH HOH A . E 5 HOH 104 404 150 HOH HOH A . E 5 HOH 105 405 149 HOH HOH A . E 5 HOH 106 406 51 HOH HOH A . E 5 HOH 107 407 157 HOH HOH A . E 5 HOH 108 408 484 HOH HOH A . E 5 HOH 109 409 166 HOH HOH A . E 5 HOH 110 410 84 HOH HOH A . E 5 HOH 111 411 313 HOH HOH A . E 5 HOH 112 412 247 HOH HOH A . E 5 HOH 113 413 4 HOH HOH A . E 5 HOH 114 414 139 HOH HOH A . E 5 HOH 115 415 325 HOH HOH A . E 5 HOH 116 416 15 HOH HOH A . E 5 HOH 117 417 131 HOH HOH A . E 5 HOH 118 418 457 HOH HOH A . E 5 HOH 119 419 488 HOH HOH A . E 5 HOH 120 420 93 HOH HOH A . E 5 HOH 121 421 186 HOH HOH A . E 5 HOH 122 422 351 HOH HOH A . E 5 HOH 123 423 160 HOH HOH A . E 5 HOH 124 424 76 HOH HOH A . E 5 HOH 125 425 17 HOH HOH A . E 5 HOH 126 426 72 HOH HOH A . E 5 HOH 127 427 287 HOH HOH A . E 5 HOH 128 428 154 HOH HOH A . E 5 HOH 129 429 97 HOH HOH A . E 5 HOH 130 430 288 HOH HOH A . E 5 HOH 131 431 404 HOH HOH A . E 5 HOH 132 432 9 HOH HOH A . E 5 HOH 133 433 172 HOH HOH A . E 5 HOH 134 434 228 HOH HOH A . E 5 HOH 135 435 41 HOH HOH A . E 5 HOH 136 436 33 HOH HOH A . E 5 HOH 137 437 106 HOH HOH A . E 5 HOH 138 438 336 HOH HOH A . E 5 HOH 139 439 250 HOH HOH A . E 5 HOH 140 440 112 HOH HOH A . E 5 HOH 141 441 402 HOH HOH A . E 5 HOH 142 442 271 HOH HOH A . E 5 HOH 143 443 423 HOH HOH A . E 5 HOH 144 444 87 HOH HOH A . E 5 HOH 145 445 13 HOH HOH A . E 5 HOH 146 446 290 HOH HOH A . E 5 HOH 147 447 6 HOH HOH A . E 5 HOH 148 448 99 HOH HOH A . E 5 HOH 149 449 425 HOH HOH A . E 5 HOH 150 450 86 HOH HOH A . E 5 HOH 151 451 100 HOH HOH A . E 5 HOH 152 452 78 HOH HOH A . E 5 HOH 153 453 138 HOH HOH A . E 5 HOH 154 454 156 HOH HOH A . E 5 HOH 155 455 103 HOH HOH A . E 5 HOH 156 456 14 HOH HOH A . E 5 HOH 157 457 285 HOH HOH A . E 5 HOH 158 458 55 HOH HOH A . E 5 HOH 159 459 526 HOH HOH A . E 5 HOH 160 460 107 HOH HOH A . E 5 HOH 161 461 184 HOH HOH A . E 5 HOH 162 462 509 HOH HOH A . E 5 HOH 163 463 183 HOH HOH A . E 5 HOH 164 464 169 HOH HOH A . E 5 HOH 165 465 343 HOH HOH A . E 5 HOH 166 466 120 HOH HOH A . E 5 HOH 167 467 16 HOH HOH A . E 5 HOH 168 468 104 HOH HOH A . E 5 HOH 169 469 165 HOH HOH A . E 5 HOH 170 470 382 HOH HOH A . E 5 HOH 171 471 517 HOH HOH A . E 5 HOH 172 472 524 HOH HOH A . E 5 HOH 173 473 132 HOH HOH A . E 5 HOH 174 474 47 HOH HOH A . E 5 HOH 175 475 170 HOH HOH A . E 5 HOH 176 476 367 HOH HOH A . E 5 HOH 177 477 499 HOH HOH A . E 5 HOH 178 478 451 HOH HOH A . E 5 HOH 179 479 81 HOH HOH A . E 5 HOH 180 480 128 HOH HOH A . E 5 HOH 181 481 82 HOH HOH A . E 5 HOH 182 482 191 HOH HOH A . E 5 HOH 183 483 349 HOH HOH A . E 5 HOH 184 484 71 HOH HOH A . E 5 HOH 185 485 126 HOH HOH A . E 5 HOH 186 486 94 HOH HOH A . E 5 HOH 187 487 88 HOH HOH A . E 5 HOH 188 488 152 HOH HOH A . E 5 HOH 189 489 36 HOH HOH A . E 5 HOH 190 490 214 HOH HOH A . E 5 HOH 191 491 43 HOH HOH A . E 5 HOH 192 492 146 HOH HOH A . E 5 HOH 193 493 77 HOH HOH A . E 5 HOH 194 494 255 HOH HOH A . E 5 HOH 195 495 54 HOH HOH A . E 5 HOH 196 496 329 HOH HOH A . E 5 HOH 197 497 506 HOH HOH A . E 5 HOH 198 498 305 HOH HOH A . E 5 HOH 199 499 67 HOH HOH A . E 5 HOH 200 500 116 HOH HOH A . E 5 HOH 201 501 435 HOH HOH A . E 5 HOH 202 502 310 HOH HOH A . E 5 HOH 203 503 483 HOH HOH A . E 5 HOH 204 504 429 HOH HOH A . E 5 HOH 205 505 350 HOH HOH A . E 5 HOH 206 506 83 HOH HOH A . E 5 HOH 207 507 510 HOH HOH A . E 5 HOH 208 508 460 HOH HOH A . E 5 HOH 209 509 396 HOH HOH A . E 5 HOH 210 510 233 HOH HOH A . E 5 HOH 211 511 318 HOH HOH A . E 5 HOH 212 512 512 HOH HOH A . E 5 HOH 213 513 283 HOH HOH A . E 5 HOH 214 514 449 HOH HOH A . E 5 HOH 215 515 91 HOH HOH A . E 5 HOH 216 516 497 HOH HOH A . E 5 HOH 217 517 272 HOH HOH A . E 5 HOH 218 518 491 HOH HOH A . E 5 HOH 219 519 523 HOH HOH A . E 5 HOH 220 520 300 HOH HOH A . E 5 HOH 221 521 251 HOH HOH A . E 5 HOH 222 522 163 HOH HOH A . E 5 HOH 223 523 407 HOH HOH A . E 5 HOH 224 524 289 HOH HOH A . E 5 HOH 225 525 454 HOH HOH A . E 5 HOH 226 526 164 HOH HOH A . E 5 HOH 227 527 502 HOH HOH A . E 5 HOH 228 528 346 HOH HOH A . E 5 HOH 229 529 505 HOH HOH A . E 5 HOH 230 530 508 HOH HOH A . E 5 HOH 231 531 243 HOH HOH A . E 5 HOH 232 532 456 HOH HOH A . E 5 HOH 233 533 507 HOH HOH A . E 5 HOH 234 534 226 HOH HOH A . E 5 HOH 235 535 173 HOH HOH A . E 5 HOH 236 536 267 HOH HOH A . E 5 HOH 237 537 345 HOH HOH A . E 5 HOH 238 538 101 HOH HOH A . E 5 HOH 239 539 317 HOH HOH A . E 5 HOH 240 540 448 HOH HOH A . E 5 HOH 241 541 61 HOH HOH A . E 5 HOH 242 542 462 HOH HOH A . E 5 HOH 243 543 333 HOH HOH A . E 5 HOH 244 544 242 HOH HOH A . E 5 HOH 245 545 334 HOH HOH A . E 5 HOH 246 546 269 HOH HOH A . E 5 HOH 247 547 316 HOH HOH A . E 5 HOH 248 548 140 HOH HOH A . E 5 HOH 249 549 180 HOH HOH A . E 5 HOH 250 550 273 HOH HOH A . E 5 HOH 251 551 193 HOH HOH A . E 5 HOH 252 552 122 HOH HOH A . E 5 HOH 253 553 401 HOH HOH A . E 5 HOH 254 554 500 HOH HOH A . E 5 HOH 255 555 46 HOH HOH A . E 5 HOH 256 556 268 HOH HOH A . E 5 HOH 257 557 258 HOH HOH A . E 5 HOH 258 558 215 HOH HOH A . E 5 HOH 259 559 79 HOH HOH A . E 5 HOH 260 560 335 HOH HOH A . E 5 HOH 261 561 320 HOH HOH A . E 5 HOH 262 562 364 HOH HOH A . E 5 HOH 263 563 155 HOH HOH A . E 5 HOH 264 564 296 HOH HOH A . E 5 HOH 265 565 162 HOH HOH A . E 5 HOH 266 566 237 HOH HOH A . E 5 HOH 267 567 312 HOH HOH A . E 5 HOH 268 568 182 HOH HOH A . E 5 HOH 269 569 113 HOH HOH A . E 5 HOH 270 570 394 HOH HOH A . E 5 HOH 271 571 486 HOH HOH A . E 5 HOH 272 572 492 HOH HOH A . E 5 HOH 273 573 489 HOH HOH A . E 5 HOH 274 574 459 HOH HOH A . E 5 HOH 275 575 168 HOH HOH A . E 5 HOH 276 576 151 HOH HOH A . E 5 HOH 277 577 403 HOH HOH A . E 5 HOH 278 578 284 HOH HOH A . E 5 HOH 279 579 522 HOH HOH A . E 5 HOH 280 580 90 HOH HOH A . E 5 HOH 281 581 248 HOH HOH A . E 5 HOH 282 582 238 HOH HOH A . E 5 HOH 283 583 447 HOH HOH A . E 5 HOH 284 584 395 HOH HOH A . E 5 HOH 285 585 400 HOH HOH A . E 5 HOH 286 586 339 HOH HOH A . E 5 HOH 287 587 222 HOH HOH A . E 5 HOH 288 588 332 HOH HOH A . E 5 HOH 289 589 176 HOH HOH A . E 5 HOH 290 590 417 HOH HOH A . E 5 HOH 291 591 185 HOH HOH A . E 5 HOH 292 592 440 HOH HOH A . E 5 HOH 293 593 452 HOH HOH A . E 5 HOH 294 594 337 HOH HOH A . E 5 HOH 295 595 239 HOH HOH A . E 5 HOH 296 596 424 HOH HOH A . E 5 HOH 297 597 292 HOH HOH A . E 5 HOH 298 598 147 HOH HOH A . E 5 HOH 299 599 412 HOH HOH A . E 5 HOH 300 600 281 HOH HOH A . E 5 HOH 301 601 433 HOH HOH A . E 5 HOH 302 602 432 HOH HOH A . E 5 HOH 303 603 187 HOH HOH A . E 5 HOH 304 604 274 HOH HOH A . E 5 HOH 305 605 319 HOH HOH A . E 5 HOH 306 606 521 HOH HOH A . E 5 HOH 307 607 485 HOH HOH A . E 5 HOH 308 608 189 HOH HOH A . E 5 HOH 309 609 293 HOH HOH A . E 5 HOH 310 610 381 HOH HOH A . E 5 HOH 311 611 408 HOH HOH A . E 5 HOH 312 612 392 HOH HOH A . E 5 HOH 313 613 50 HOH HOH A . E 5 HOH 314 614 519 HOH HOH A . E 5 HOH 315 615 315 HOH HOH A . E 5 HOH 316 616 391 HOH HOH A . E 5 HOH 317 617 295 HOH HOH A . E 5 HOH 318 618 63 HOH HOH A . E 5 HOH 319 619 498 HOH HOH A . E 5 HOH 320 620 227 HOH HOH A . E 5 HOH 321 621 458 HOH HOH A . E 5 HOH 322 622 430 HOH HOH A . E 5 HOH 323 623 49 HOH HOH A . E 5 HOH 324 624 446 HOH HOH A . E 5 HOH 325 625 246 HOH HOH A . E 5 HOH 326 626 144 HOH HOH A . E 5 HOH 327 627 178 HOH HOH A . E 5 HOH 328 628 436 HOH HOH A . E 5 HOH 329 629 342 HOH HOH A . E 5 HOH 330 630 298 HOH HOH A . E 5 HOH 331 631 431 HOH HOH A . E 5 HOH 332 632 344 HOH HOH A . E 5 HOH 333 633 504 HOH HOH A . E 5 HOH 334 634 304 HOH HOH A . E 5 HOH 335 635 501 HOH HOH A . E 5 HOH 336 636 434 HOH HOH A . E 5 HOH 337 637 27 HOH HOH A . E 5 HOH 338 638 411 HOH HOH A . E 5 HOH 339 639 450 HOH HOH A . E 5 HOH 340 640 307 HOH HOH A . E 5 HOH 341 641 194 HOH HOH A . E 5 HOH 342 642 171 HOH HOH A . E 5 HOH 343 643 341 HOH HOH A . E 5 HOH 344 644 161 HOH HOH A . F 5 HOH 1 201 181 HOH HOH B . F 5 HOH 2 202 444 HOH HOH B . F 5 HOH 3 203 513 HOH HOH B . F 5 HOH 4 204 309 HOH HOH B . F 5 HOH 5 205 473 HOH HOH B . F 5 HOH 6 206 376 HOH HOH B . F 5 HOH 7 207 11 HOH HOH B . F 5 HOH 8 208 92 HOH HOH B . F 5 HOH 9 209 442 HOH HOH B . F 5 HOH 10 210 465 HOH HOH B . F 5 HOH 11 211 466 HOH HOH B . F 5 HOH 12 212 25 HOH HOH B . F 5 HOH 13 213 516 HOH HOH B . F 5 HOH 14 214 464 HOH HOH B . F 5 HOH 15 215 73 HOH HOH B . F 5 HOH 16 216 481 HOH HOH B . F 5 HOH 17 217 375 HOH HOH B . F 5 HOH 18 218 57 HOH HOH B . F 5 HOH 19 219 475 HOH HOH B . F 5 HOH 20 220 474 HOH HOH B . F 5 HOH 21 221 422 HOH HOH B . F 5 HOH 22 222 443 HOH HOH B . F 5 HOH 23 223 472 HOH HOH B . F 5 HOH 24 224 261 HOH HOH B . F 5 HOH 25 225 347 HOH HOH B . F 5 HOH 26 226 115 HOH HOH B . F 5 HOH 27 227 234 HOH HOH B . F 5 HOH 28 228 109 HOH HOH B . F 5 HOH 29 229 503 HOH HOH B . F 5 HOH 30 230 179 HOH HOH B . F 5 HOH 31 231 190 HOH HOH B . G 5 HOH 1 101 240 HOH HOH C . G 5 HOH 2 102 470 HOH HOH C . G 5 HOH 3 103 445 HOH HOH C . G 5 HOH 4 104 314 HOH HOH C . G 5 HOH 5 105 468 HOH HOH C . G 5 HOH 6 106 469 HOH HOH C . G 5 HOH 7 107 482 HOH HOH C . G 5 HOH 8 108 158 HOH HOH C . G 5 HOH 9 109 478 HOH HOH C . G 5 HOH 10 110 441 HOH HOH C . G 5 HOH 11 111 515 HOH HOH C . G 5 HOH 12 112 230 HOH HOH C . G 5 HOH 13 113 225 HOH HOH C . G 5 HOH 14 114 514 HOH HOH C . G 5 HOH 15 115 124 HOH HOH C . G 5 HOH 16 116 477 HOH HOH C . G 5 HOH 17 117 479 HOH HOH C . G 5 HOH 18 118 229 HOH HOH C . G 5 HOH 19 119 471 HOH HOH C . G 5 HOH 20 120 252 HOH HOH C . G 5 HOH 21 121 108 HOH HOH C . G 5 HOH 22 122 159 HOH HOH C . G 5 HOH 23 123 480 HOH HOH C . G 5 HOH 24 124 52 HOH HOH C . G 5 HOH 25 125 461 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3090 ? 1 MORE -19 ? 1 'SSA (A^2)' 14990 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-10-28 2 'Structure model' 1 1 2015-11-18 3 'Structure model' 1 2 2015-11-25 4 'Structure model' 1 3 2017-09-13 5 'Structure model' 1 4 2019-11-27 6 'Structure model' 1 5 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Author supporting evidence' 7 6 'Structure model' 'Data collection' 8 6 'Structure model' 'Database references' 9 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' pdbx_audit_support 3 4 'Structure model' pdbx_struct_oper_list 4 5 'Structure model' pdbx_audit_support 5 6 'Structure model' chem_comp_atom 6 6 'Structure model' chem_comp_bond 7 6 'Structure model' database_2 8 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_id_CSD' 2 4 'Structure model' '_pdbx_audit_support.funding_organization' 3 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 4 5 'Structure model' '_pdbx_audit_support.funding_organization' 5 6 'Structure model' '_database_2.pdbx_DOI' 6 6 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 45.5997 21.1052 65.9670 0.1962 ? 0.0032 ? 0.0390 ? 0.1229 ? -0.0005 ? 0.1677 ? 1.3727 ? -0.7783 ? 0.6217 ? 4.5034 ? -3.5847 ? 4.5896 ? 0.0525 ? 0.0134 ? 0.3379 ? 0.1450 ? -0.0736 ? -0.0486 ? -0.5475 ? 0.0450 ? -0.0059 ? 2 'X-RAY DIFFRACTION' ? refined 58.1096 7.1395 70.5412 0.0943 ? 0.0048 ? -0.0178 ? 0.1451 ? 0.0010 ? 0.1017 ? 2.5292 ? -0.2961 ? -2.0990 ? 1.7865 ? 0.9152 ? 3.5394 ? -0.0723 ? -0.2636 ? -0.0639 ? 0.0562 ? 0.0860 ? -0.1012 ? 0.0399 ? 0.3705 ? -0.0041 ? 3 'X-RAY DIFFRACTION' ? refined 40.0298 12.8938 62.2583 0.1273 ? 0.0022 ? -0.0137 ? 0.1398 ? 0.0023 ? 0.1396 ? 2.8221 ? -0.9015 ? 0.5812 ? 3.6261 ? -2.1996 ? 3.9659 ? 0.1331 ? 0.0856 ? 0.0529 ? -0.0992 ? 0.1012 ? 0.4318 ? -0.1169 ? -0.2654 ? -0.2298 ? 4 'X-RAY DIFFRACTION' ? refined 50.5401 20.4520 55.6502 0.1351 ? -0.0067 ? 0.0212 ? 0.0866 ? 0.0107 ? 0.1190 ? 3.1663 ? -1.2278 ? 2.6734 ? 3.0982 ? -2.1559 ? 6.3508 ? -0.0747 ? 0.1148 ? 0.2230 ? 0.0633 ? 0.0148 ? 0.0122 ? -0.4918 ? 0.0888 ? 0.0925 ? 5 'X-RAY DIFFRACTION' ? refined 55.4860 10.4341 47.1408 0.1043 ? -0.0127 ? -0.0016 ? 0.1057 ? 0.0056 ? 0.1028 ? 0.4178 ? -0.2849 ? -0.4027 ? 0.5953 ? 0.3025 ? 1.5747 ? 0.0250 ? 0.0504 ? 0.0096 ? -0.0479 ? 0.0075 ? 0.0379 ? -0.0603 ? -0.0971 ? -0.0340 ? 6 'X-RAY DIFFRACTION' ? refined 59.3213 0.2253 43.1597 0.0855 ? -0.0100 ? -0.0037 ? 0.0734 ? 0.0156 ? 0.0780 ? 2.2782 ? 0.5532 ? 0.8498 ? 3.4087 ? 1.5360 ? 4.1811 ? 0.0364 ? 0.0063 ? -0.0953 ? -0.1259 ? -0.0164 ? 0.1493 ? 0.1398 ? -0.1429 ? -0.0143 ? 7 'X-RAY DIFFRACTION' ? refined 69.8903 -1.7896 41.1275 0.0822 ? 0.0087 ? 0.0047 ? 0.0520 ? -0.0062 ? 0.0649 ? 3.1026 ? 0.1930 ? 0.0429 ? 2.6085 ? 0.2418 ? 2.7579 ? 0.0907 ? 0.1696 ? -0.0694 ? -0.1741 ? 0.0068 ? -0.0507 ? 0.1951 ? 0.1904 ? -0.1156 ? 8 'X-RAY DIFFRACTION' ? refined 65.5130 -13.0163 46.0382 0.1491 ? -0.0111 ? 0.0049 ? 0.0984 ? -0.0032 ? 0.1150 ? 0.9078 ? -0.0857 ? -0.1420 ? 2.1230 ? 0.5955 ? 1.0622 ? -0.0524 ? -0.0387 ? -0.1592 ? -0.0025 ? 0.0284 ? 0.0244 ? 0.1845 ? 0.0210 ? 0.0215 ? 9 'X-RAY DIFFRACTION' ? refined 60.3588 -9.9495 63.2229 0.1619 ? 0.0358 ? 0.0266 ? 0.2736 ? 0.0820 ? 0.2484 ? 0.1100 ? -0.3293 ? -0.2916 ? 2.0543 ? -0.0519 ? 1.5732 ? -0.2456 ? -0.5044 ? -0.4994 ? 0.2033 ? 0.1302 ? -0.0803 ? 0.1628 ? -0.1287 ? -0.0465 ? 10 'X-RAY DIFFRACTION' ? refined 67.5415 -14.3806 63.7519 0.2263 ? 0.0735 ? 0.0765 ? 0.5721 ? 0.2529 ? 0.5809 ? 4.4537 ? -0.7421 ? -0.5075 ? 1.4625 ? 0.6252 ? 0.2763 ? -0.1593 ? 0.2275 ? -0.5791 ? 0.0905 ? 0.1268 ? 0.0185 ? 0.0955 ? 0.1452 ? -0.0379 ? 11 'X-RAY DIFFRACTION' ? refined 48.9857 -5.6900 60.6956 0.2293 ? 0.1108 ? -0.0299 ? 0.3813 ? -0.0279 ? 0.3266 ? 3.4463 ? 1.8899 ? -0.7331 ? 5.6597 ? -0.0831 ? 2.1859 ? -0.3945 ? 0.0737 ? -0.5606 ? -0.3045 ? 0.1950 ? 1.0278 ? -0.4532 ? -0.6437 ? 0.1640 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid -1 through 15 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 16 through 38 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 39 through 57 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 58 through 73 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 74 through 143 ) ; 6 'X-RAY DIFFRACTION' 6 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 144 through 162 ) ; 7 'X-RAY DIFFRACTION' 7 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 163 through 178 ) ; 8 'X-RAY DIFFRACTION' 8 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 179 through 229 ) ; 9 'X-RAY DIFFRACTION' 9 ? ? B 0 ? ? B 0 ? ;chain 'B' and (resid 1 through 12 ) ; 10 'X-RAY DIFFRACTION' 10 ? ? C 0 ? ? C 0 ? ;chain 'C' and (resid 1 through 6 ) ; 11 'X-RAY DIFFRACTION' 11 ? ? C 0 ? ? C 0 ? ;chain 'C' and (resid 7 through 12 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 438 ? ? O A HOH 517 ? ? 2.18 2 1 O A HOH 476 ? ? O A HOH 509 ? ? 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 DC _pdbx_validate_rmsd_angle.auth_seq_id_1 17 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 DC _pdbx_validate_rmsd_angle.auth_seq_id_2 17 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 DC _pdbx_validate_rmsd_angle.auth_seq_id_3 17 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.82 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.52 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 54 ? ? 72.51 153.85 2 1 THR A 118 ? ? -99.01 -72.66 3 1 TYR A 134 ? ? -132.19 -46.27 4 1 LYS A 158 ? ? 51.59 -122.25 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 643 ? 5.84 . 2 1 O ? A HOH 644 ? 6.20 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A PRO -2 ? A PRO 2 3 1 Y 1 A GLU 230 ? A GLU 234 4 1 Y 1 A LYS 231 ? A LYS 235 5 1 Y 1 A ILE 232 ? A ILE 236 6 1 Y 1 A GLY 233 ? A GLY 237 7 1 Y 1 A GLU 234 ? A GLU 238 8 1 Y 1 A THR 235 ? A THR 239 9 1 Y 1 A LEU 236 ? A LEU 240 10 1 Y 1 A SER 237 ? A SER 241 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 54K N1 N Y N 1 54K C2 C Y N 2 54K C3 C Y N 3 54K C3M C N N 4 54K C4 C Y N 5 54K C5 C Y N 6 54K C6 C Y N 7 54K N6 N N N 8 54K N7 N Y N 9 54K C8 C Y N 10 54K N9 N Y N 11 54K H1 H N N 12 54K H2 H N N 13 54K H3 H N N 14 54K H4 H N N 15 54K H5 H N N 16 54K H6 H N N 17 54K H7 H N N 18 54K H8 H N N 19 ALA N N N N 20 ALA CA C N S 21 ALA C C N N 22 ALA O O N N 23 ALA CB C N N 24 ALA OXT O N N 25 ALA H H N N 26 ALA H2 H N N 27 ALA HA H N N 28 ALA HB1 H N N 29 ALA HB2 H N N 30 ALA HB3 H N N 31 ALA HXT H N N 32 ARG N N N N 33 ARG CA C N S 34 ARG C C N N 35 ARG O O N N 36 ARG CB C N N 37 ARG CG C N N 38 ARG CD C N N 39 ARG NE N N N 40 ARG CZ C N N 41 ARG NH1 N N N 42 ARG NH2 N N N 43 ARG OXT O N N 44 ARG H H N N 45 ARG H2 H N N 46 ARG HA H N N 47 ARG HB2 H N N 48 ARG HB3 H N N 49 ARG HG2 H N N 50 ARG HG3 H N N 51 ARG HD2 H N N 52 ARG HD3 H N N 53 ARG HE H N N 54 ARG HH11 H N N 55 ARG HH12 H N N 56 ARG HH21 H N N 57 ARG HH22 H N N 58 ARG HXT H N N 59 ASN N N N N 60 ASN CA C N S 61 ASN C C N N 62 ASN O O N N 63 ASN CB C N N 64 ASN CG C N N 65 ASN OD1 O N N 66 ASN ND2 N N N 67 ASN OXT O N N 68 ASN H H N N 69 ASN H2 H N N 70 ASN HA H N N 71 ASN HB2 H N N 72 ASN HB3 H N N 73 ASN HD21 H N N 74 ASN HD22 H N N 75 ASN HXT H N N 76 ASP N N N N 77 ASP CA C N S 78 ASP C C N N 79 ASP O O N N 80 ASP CB C N N 81 ASP CG C N N 82 ASP OD1 O N N 83 ASP OD2 O N N 84 ASP OXT O N N 85 ASP H H N N 86 ASP H2 H N N 87 ASP HA H N N 88 ASP HB2 H N N 89 ASP HB3 H N N 90 ASP HD2 H N N 91 ASP HXT H N N 92 DA OP3 O N N 93 DA P P N N 94 DA OP1 O N N 95 DA OP2 O N N 96 DA "O5'" O N N 97 DA "C5'" C N N 98 DA "C4'" C N R 99 DA "O4'" O N N 100 DA "C3'" C N S 101 DA "O3'" O N N 102 DA "C2'" C N N 103 DA "C1'" C N R 104 DA N9 N Y N 105 DA C8 C Y N 106 DA N7 N Y N 107 DA C5 C Y N 108 DA C6 C Y N 109 DA N6 N N N 110 DA N1 N Y N 111 DA C2 C Y N 112 DA N3 N Y N 113 DA C4 C Y N 114 DA HOP3 H N N 115 DA HOP2 H N N 116 DA "H5'" H N N 117 DA "H5''" H N N 118 DA "H4'" H N N 119 DA "H3'" H N N 120 DA "HO3'" H N N 121 DA "H2'" H N N 122 DA "H2''" H N N 123 DA "H1'" H N N 124 DA H8 H N N 125 DA H61 H N N 126 DA H62 H N N 127 DA H2 H N N 128 DC OP3 O N N 129 DC P P N N 130 DC OP1 O N N 131 DC OP2 O N N 132 DC "O5'" O N N 133 DC "C5'" C N N 134 DC "C4'" C N R 135 DC "O4'" O N N 136 DC "C3'" C N S 137 DC "O3'" O N N 138 DC "C2'" C N N 139 DC "C1'" C N R 140 DC N1 N N N 141 DC C2 C N N 142 DC O2 O N N 143 DC N3 N N N 144 DC C4 C N N 145 DC N4 N N N 146 DC C5 C N N 147 DC C6 C N N 148 DC HOP3 H N N 149 DC HOP2 H N N 150 DC "H5'" H N N 151 DC "H5''" H N N 152 DC "H4'" H N N 153 DC "H3'" H N N 154 DC "HO3'" H N N 155 DC "H2'" H N N 156 DC "H2''" H N N 157 DC "H1'" H N N 158 DC H41 H N N 159 DC H42 H N N 160 DC H5 H N N 161 DC H6 H N N 162 DG OP3 O N N 163 DG P P N N 164 DG OP1 O N N 165 DG OP2 O N N 166 DG "O5'" O N N 167 DG "C5'" C N N 168 DG "C4'" C N R 169 DG "O4'" O N N 170 DG "C3'" C N S 171 DG "O3'" O N N 172 DG "C2'" C N N 173 DG "C1'" C N R 174 DG N9 N Y N 175 DG C8 C Y N 176 DG N7 N Y N 177 DG C5 C Y N 178 DG C6 C N N 179 DG O6 O N N 180 DG N1 N N N 181 DG C2 C N N 182 DG N2 N N N 183 DG N3 N N N 184 DG C4 C Y N 185 DG HOP3 H N N 186 DG HOP2 H N N 187 DG "H5'" H N N 188 DG "H5''" H N N 189 DG "H4'" H N N 190 DG "H3'" H N N 191 DG "HO3'" H N N 192 DG "H2'" H N N 193 DG "H2''" H N N 194 DG "H1'" H N N 195 DG H8 H N N 196 DG H1 H N N 197 DG H21 H N N 198 DG H22 H N N 199 DT OP3 O N N 200 DT P P N N 201 DT OP1 O N N 202 DT OP2 O N N 203 DT "O5'" O N N 204 DT "C5'" C N N 205 DT "C4'" C N R 206 DT "O4'" O N N 207 DT "C3'" C N S 208 DT "O3'" O N N 209 DT "C2'" C N N 210 DT "C1'" C N R 211 DT N1 N N N 212 DT C2 C N N 213 DT O2 O N N 214 DT N3 N N N 215 DT C4 C N N 216 DT O4 O N N 217 DT C5 C N N 218 DT C7 C N N 219 DT C6 C N N 220 DT HOP3 H N N 221 DT HOP2 H N N 222 DT "H5'" H N N 223 DT "H5''" H N N 224 DT "H4'" H N N 225 DT "H3'" H N N 226 DT "HO3'" H N N 227 DT "H2'" H N N 228 DT "H2''" H N N 229 DT "H1'" H N N 230 DT H3 H N N 231 DT H71 H N N 232 DT H72 H N N 233 DT H73 H N N 234 DT H6 H N N 235 GLN N N N N 236 GLN CA C N S 237 GLN C C N N 238 GLN O O N N 239 GLN CB C N N 240 GLN CG C N N 241 GLN CD C N N 242 GLN OE1 O N N 243 GLN NE2 N N N 244 GLN OXT O N N 245 GLN H H N N 246 GLN H2 H N N 247 GLN HA H N N 248 GLN HB2 H N N 249 GLN HB3 H N N 250 GLN HG2 H N N 251 GLN HG3 H N N 252 GLN HE21 H N N 253 GLN HE22 H N N 254 GLN HXT H N N 255 GLU N N N N 256 GLU CA C N S 257 GLU C C N N 258 GLU O O N N 259 GLU CB C N N 260 GLU CG C N N 261 GLU CD C N N 262 GLU OE1 O N N 263 GLU OE2 O N N 264 GLU OXT O N N 265 GLU H H N N 266 GLU H2 H N N 267 GLU HA H N N 268 GLU HB2 H N N 269 GLU HB3 H N N 270 GLU HG2 H N N 271 GLU HG3 H N N 272 GLU HE2 H N N 273 GLU HXT H N N 274 GLY N N N N 275 GLY CA C N N 276 GLY C C N N 277 GLY O O N N 278 GLY OXT O N N 279 GLY H H N N 280 GLY H2 H N N 281 GLY HA2 H N N 282 GLY HA3 H N N 283 GLY HXT H N N 284 HIS N N N N 285 HIS CA C N S 286 HIS C C N N 287 HIS O O N N 288 HIS CB C N N 289 HIS CG C Y N 290 HIS ND1 N Y N 291 HIS CD2 C Y N 292 HIS CE1 C Y N 293 HIS NE2 N Y N 294 HIS OXT O N N 295 HIS H H N N 296 HIS H2 H N N 297 HIS HA H N N 298 HIS HB2 H N N 299 HIS HB3 H N N 300 HIS HD1 H N N 301 HIS HD2 H N N 302 HIS HE1 H N N 303 HIS HE2 H N N 304 HIS HXT H N N 305 HOH O O N N 306 HOH H1 H N N 307 HOH H2 H N N 308 ILE N N N N 309 ILE CA C N S 310 ILE C C N N 311 ILE O O N N 312 ILE CB C N S 313 ILE CG1 C N N 314 ILE CG2 C N N 315 ILE CD1 C N N 316 ILE OXT O N N 317 ILE H H N N 318 ILE H2 H N N 319 ILE HA H N N 320 ILE HB H N N 321 ILE HG12 H N N 322 ILE HG13 H N N 323 ILE HG21 H N N 324 ILE HG22 H N N 325 ILE HG23 H N N 326 ILE HD11 H N N 327 ILE HD12 H N N 328 ILE HD13 H N N 329 ILE HXT H N N 330 LEU N N N N 331 LEU CA C N S 332 LEU C C N N 333 LEU O O N N 334 LEU CB C N N 335 LEU CG C N N 336 LEU CD1 C N N 337 LEU CD2 C N N 338 LEU OXT O N N 339 LEU H H N N 340 LEU H2 H N N 341 LEU HA H N N 342 LEU HB2 H N N 343 LEU HB3 H N N 344 LEU HG H N N 345 LEU HD11 H N N 346 LEU HD12 H N N 347 LEU HD13 H N N 348 LEU HD21 H N N 349 LEU HD22 H N N 350 LEU HD23 H N N 351 LEU HXT H N N 352 LYS N N N N 353 LYS CA C N S 354 LYS C C N N 355 LYS O O N N 356 LYS CB C N N 357 LYS CG C N N 358 LYS CD C N N 359 LYS CE C N N 360 LYS NZ N N N 361 LYS OXT O N N 362 LYS H H N N 363 LYS H2 H N N 364 LYS HA H N N 365 LYS HB2 H N N 366 LYS HB3 H N N 367 LYS HG2 H N N 368 LYS HG3 H N N 369 LYS HD2 H N N 370 LYS HD3 H N N 371 LYS HE2 H N N 372 LYS HE3 H N N 373 LYS HZ1 H N N 374 LYS HZ2 H N N 375 LYS HZ3 H N N 376 LYS HXT H N N 377 MET N N N N 378 MET CA C N S 379 MET C C N N 380 MET O O N N 381 MET CB C N N 382 MET CG C N N 383 MET SD S N N 384 MET CE C N N 385 MET OXT O N N 386 MET H H N N 387 MET H2 H N N 388 MET HA H N N 389 MET HB2 H N N 390 MET HB3 H N N 391 MET HG2 H N N 392 MET HG3 H N N 393 MET HE1 H N N 394 MET HE2 H N N 395 MET HE3 H N N 396 MET HXT H N N 397 ORP C1 C N S 398 ORP O1 O N N 399 ORP C2 C N N 400 ORP C3 C N S 401 ORP O3 O N N 402 ORP C4 C N R 403 ORP O4 O N N 404 ORP C5 C N N 405 ORP O5 O N N 406 ORP P P N N 407 ORP O1P O N N 408 ORP O2P O N N 409 ORP O3P O N N 410 ORP H1 H N N 411 ORP HO1 H N N 412 ORP H21 H N N 413 ORP H22 H N N 414 ORP H3 H N N 415 ORP HO3 H N N 416 ORP H4 H N N 417 ORP H51 H N N 418 ORP H52 H N N 419 ORP HOP2 H N N 420 ORP HOP3 H N N 421 PHE N N N N 422 PHE CA C N S 423 PHE C C N N 424 PHE O O N N 425 PHE CB C N N 426 PHE CG C Y N 427 PHE CD1 C Y N 428 PHE CD2 C Y N 429 PHE CE1 C Y N 430 PHE CE2 C Y N 431 PHE CZ C Y N 432 PHE OXT O N N 433 PHE H H N N 434 PHE H2 H N N 435 PHE HA H N N 436 PHE HB2 H N N 437 PHE HB3 H N N 438 PHE HD1 H N N 439 PHE HD2 H N N 440 PHE HE1 H N N 441 PHE HE2 H N N 442 PHE HZ H N N 443 PHE HXT H N N 444 PRO N N N N 445 PRO CA C N S 446 PRO C C N N 447 PRO O O N N 448 PRO CB C N N 449 PRO CG C N N 450 PRO CD C N N 451 PRO OXT O N N 452 PRO H H N N 453 PRO HA H N N 454 PRO HB2 H N N 455 PRO HB3 H N N 456 PRO HG2 H N N 457 PRO HG3 H N N 458 PRO HD2 H N N 459 PRO HD3 H N N 460 PRO HXT H N N 461 SER N N N N 462 SER CA C N S 463 SER C C N N 464 SER O O N N 465 SER CB C N N 466 SER OG O N N 467 SER OXT O N N 468 SER H H N N 469 SER H2 H N N 470 SER HA H N N 471 SER HB2 H N N 472 SER HB3 H N N 473 SER HG H N N 474 SER HXT H N N 475 THR N N N N 476 THR CA C N S 477 THR C C N N 478 THR O O N N 479 THR CB C N R 480 THR OG1 O N N 481 THR CG2 C N N 482 THR OXT O N N 483 THR H H N N 484 THR H2 H N N 485 THR HA H N N 486 THR HB H N N 487 THR HG1 H N N 488 THR HG21 H N N 489 THR HG22 H N N 490 THR HG23 H N N 491 THR HXT H N N 492 TRP N N N N 493 TRP CA C N S 494 TRP C C N N 495 TRP O O N N 496 TRP CB C N N 497 TRP CG C Y N 498 TRP CD1 C Y N 499 TRP CD2 C Y N 500 TRP NE1 N Y N 501 TRP CE2 C Y N 502 TRP CE3 C Y N 503 TRP CZ2 C Y N 504 TRP CZ3 C Y N 505 TRP CH2 C Y N 506 TRP OXT O N N 507 TRP H H N N 508 TRP H2 H N N 509 TRP HA H N N 510 TRP HB2 H N N 511 TRP HB3 H N N 512 TRP HD1 H N N 513 TRP HE1 H N N 514 TRP HE3 H N N 515 TRP HZ2 H N N 516 TRP HZ3 H N N 517 TRP HH2 H N N 518 TRP HXT H N N 519 TYR N N N N 520 TYR CA C N S 521 TYR C C N N 522 TYR O O N N 523 TYR CB C N N 524 TYR CG C Y N 525 TYR CD1 C Y N 526 TYR CD2 C Y N 527 TYR CE1 C Y N 528 TYR CE2 C Y N 529 TYR CZ C Y N 530 TYR OH O N N 531 TYR OXT O N N 532 TYR H H N N 533 TYR H2 H N N 534 TYR HA H N N 535 TYR HB2 H N N 536 TYR HB3 H N N 537 TYR HD1 H N N 538 TYR HD2 H N N 539 TYR HE1 H N N 540 TYR HE2 H N N 541 TYR HH H N N 542 TYR HXT H N N 543 VAL N N N N 544 VAL CA C N S 545 VAL C C N N 546 VAL O O N N 547 VAL CB C N N 548 VAL CG1 C N N 549 VAL CG2 C N N 550 VAL OXT O N N 551 VAL H H N N 552 VAL H2 H N N 553 VAL HA H N N 554 VAL HB H N N 555 VAL HG11 H N N 556 VAL HG12 H N N 557 VAL HG13 H N N 558 VAL HG21 H N N 559 VAL HG22 H N N 560 VAL HG23 H N N 561 VAL HXT H N N 562 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 54K C3M C3 sing N N 1 54K C2 C3 doub Y N 2 54K C2 N1 sing Y N 3 54K C3 C4 sing Y N 4 54K N1 C6 doub Y N 5 54K C4 N9 sing Y N 6 54K C4 C5 doub Y N 7 54K C6 C5 sing Y N 8 54K C6 N6 sing N N 9 54K N9 C8 doub Y N 10 54K C5 N7 sing Y N 11 54K C8 N7 sing Y N 12 54K C2 H1 sing N N 13 54K C3M H2 sing N N 14 54K C3M H3 sing N N 15 54K C3M H4 sing N N 16 54K N6 H5 sing N N 17 54K N6 H6 sing N N 18 54K N7 H7 sing N N 19 54K C8 H8 sing N N 20 ALA N CA sing N N 21 ALA N H sing N N 22 ALA N H2 sing N N 23 ALA CA C sing N N 24 ALA CA CB sing N N 25 ALA CA HA sing N N 26 ALA C O doub N N 27 ALA C OXT sing N N 28 ALA CB HB1 sing N N 29 ALA CB HB2 sing N N 30 ALA CB HB3 sing N N 31 ALA OXT HXT sing N N 32 ARG N CA sing N N 33 ARG N H sing N N 34 ARG N H2 sing N N 35 ARG CA C sing N N 36 ARG CA CB sing N N 37 ARG CA HA sing N N 38 ARG C O doub N N 39 ARG C OXT sing N N 40 ARG CB CG sing N N 41 ARG CB HB2 sing N N 42 ARG CB HB3 sing N N 43 ARG CG CD sing N N 44 ARG CG HG2 sing N N 45 ARG CG HG3 sing N N 46 ARG CD NE sing N N 47 ARG CD HD2 sing N N 48 ARG CD HD3 sing N N 49 ARG NE CZ sing N N 50 ARG NE HE sing N N 51 ARG CZ NH1 sing N N 52 ARG CZ NH2 doub N N 53 ARG NH1 HH11 sing N N 54 ARG NH1 HH12 sing N N 55 ARG NH2 HH21 sing N N 56 ARG NH2 HH22 sing N N 57 ARG OXT HXT sing N N 58 ASN N CA sing N N 59 ASN N H sing N N 60 ASN N H2 sing N N 61 ASN CA C sing N N 62 ASN CA CB sing N N 63 ASN CA HA sing N N 64 ASN C O doub N N 65 ASN C OXT sing N N 66 ASN CB CG sing N N 67 ASN CB HB2 sing N N 68 ASN CB HB3 sing N N 69 ASN CG OD1 doub N N 70 ASN CG ND2 sing N N 71 ASN ND2 HD21 sing N N 72 ASN ND2 HD22 sing N N 73 ASN OXT HXT sing N N 74 ASP N CA sing N N 75 ASP N H sing N N 76 ASP N H2 sing N N 77 ASP CA C sing N N 78 ASP CA CB sing N N 79 ASP CA HA sing N N 80 ASP C O doub N N 81 ASP C OXT sing N N 82 ASP CB CG sing N N 83 ASP CB HB2 sing N N 84 ASP CB HB3 sing N N 85 ASP CG OD1 doub N N 86 ASP CG OD2 sing N N 87 ASP OD2 HD2 sing N N 88 ASP OXT HXT sing N N 89 DA OP3 P sing N N 90 DA OP3 HOP3 sing N N 91 DA P OP1 doub N N 92 DA P OP2 sing N N 93 DA P "O5'" sing N N 94 DA OP2 HOP2 sing N N 95 DA "O5'" "C5'" sing N N 96 DA "C5'" "C4'" sing N N 97 DA "C5'" "H5'" sing N N 98 DA "C5'" "H5''" sing N N 99 DA "C4'" "O4'" sing N N 100 DA "C4'" "C3'" sing N N 101 DA "C4'" "H4'" sing N N 102 DA "O4'" "C1'" sing N N 103 DA "C3'" "O3'" sing N N 104 DA "C3'" "C2'" sing N N 105 DA "C3'" "H3'" sing N N 106 DA "O3'" "HO3'" sing N N 107 DA "C2'" "C1'" sing N N 108 DA "C2'" "H2'" sing N N 109 DA "C2'" "H2''" sing N N 110 DA "C1'" N9 sing N N 111 DA "C1'" "H1'" sing N N 112 DA N9 C8 sing Y N 113 DA N9 C4 sing Y N 114 DA C8 N7 doub Y N 115 DA C8 H8 sing N N 116 DA N7 C5 sing Y N 117 DA C5 C6 sing Y N 118 DA C5 C4 doub Y N 119 DA C6 N6 sing N N 120 DA C6 N1 doub Y N 121 DA N6 H61 sing N N 122 DA N6 H62 sing N N 123 DA N1 C2 sing Y N 124 DA C2 N3 doub Y N 125 DA C2 H2 sing N N 126 DA N3 C4 sing Y N 127 DC OP3 P sing N N 128 DC OP3 HOP3 sing N N 129 DC P OP1 doub N N 130 DC P OP2 sing N N 131 DC P "O5'" sing N N 132 DC OP2 HOP2 sing N N 133 DC "O5'" "C5'" sing N N 134 DC "C5'" "C4'" sing N N 135 DC "C5'" "H5'" sing N N 136 DC "C5'" "H5''" sing N N 137 DC "C4'" "O4'" sing N N 138 DC "C4'" "C3'" sing N N 139 DC "C4'" "H4'" sing N N 140 DC "O4'" "C1'" sing N N 141 DC "C3'" "O3'" sing N N 142 DC "C3'" "C2'" sing N N 143 DC "C3'" "H3'" sing N N 144 DC "O3'" "HO3'" sing N N 145 DC "C2'" "C1'" sing N N 146 DC "C2'" "H2'" sing N N 147 DC "C2'" "H2''" sing N N 148 DC "C1'" N1 sing N N 149 DC "C1'" "H1'" sing N N 150 DC N1 C2 sing N N 151 DC N1 C6 sing N N 152 DC C2 O2 doub N N 153 DC C2 N3 sing N N 154 DC N3 C4 doub N N 155 DC C4 N4 sing N N 156 DC C4 C5 sing N N 157 DC N4 H41 sing N N 158 DC N4 H42 sing N N 159 DC C5 C6 doub N N 160 DC C5 H5 sing N N 161 DC C6 H6 sing N N 162 DG OP3 P sing N N 163 DG OP3 HOP3 sing N N 164 DG P OP1 doub N N 165 DG P OP2 sing N N 166 DG P "O5'" sing N N 167 DG OP2 HOP2 sing N N 168 DG "O5'" "C5'" sing N N 169 DG "C5'" "C4'" sing N N 170 DG "C5'" "H5'" sing N N 171 DG "C5'" "H5''" sing N N 172 DG "C4'" "O4'" sing N N 173 DG "C4'" "C3'" sing N N 174 DG "C4'" "H4'" sing N N 175 DG "O4'" "C1'" sing N N 176 DG "C3'" "O3'" sing N N 177 DG "C3'" "C2'" sing N N 178 DG "C3'" "H3'" sing N N 179 DG "O3'" "HO3'" sing N N 180 DG "C2'" "C1'" sing N N 181 DG "C2'" "H2'" sing N N 182 DG "C2'" "H2''" sing N N 183 DG "C1'" N9 sing N N 184 DG "C1'" "H1'" sing N N 185 DG N9 C8 sing Y N 186 DG N9 C4 sing Y N 187 DG C8 N7 doub Y N 188 DG C8 H8 sing N N 189 DG N7 C5 sing Y N 190 DG C5 C6 sing N N 191 DG C5 C4 doub Y N 192 DG C6 O6 doub N N 193 DG C6 N1 sing N N 194 DG N1 C2 sing N N 195 DG N1 H1 sing N N 196 DG C2 N2 sing N N 197 DG C2 N3 doub N N 198 DG N2 H21 sing N N 199 DG N2 H22 sing N N 200 DG N3 C4 sing N N 201 DT OP3 P sing N N 202 DT OP3 HOP3 sing N N 203 DT P OP1 doub N N 204 DT P OP2 sing N N 205 DT P "O5'" sing N N 206 DT OP2 HOP2 sing N N 207 DT "O5'" "C5'" sing N N 208 DT "C5'" "C4'" sing N N 209 DT "C5'" "H5'" sing N N 210 DT "C5'" "H5''" sing N N 211 DT "C4'" "O4'" sing N N 212 DT "C4'" "C3'" sing N N 213 DT "C4'" "H4'" sing N N 214 DT "O4'" "C1'" sing N N 215 DT "C3'" "O3'" sing N N 216 DT "C3'" "C2'" sing N N 217 DT "C3'" "H3'" sing N N 218 DT "O3'" "HO3'" sing N N 219 DT "C2'" "C1'" sing N N 220 DT "C2'" "H2'" sing N N 221 DT "C2'" "H2''" sing N N 222 DT "C1'" N1 sing N N 223 DT "C1'" "H1'" sing N N 224 DT N1 C2 sing N N 225 DT N1 C6 sing N N 226 DT C2 O2 doub N N 227 DT C2 N3 sing N N 228 DT N3 C4 sing N N 229 DT N3 H3 sing N N 230 DT C4 O4 doub N N 231 DT C4 C5 sing N N 232 DT C5 C7 sing N N 233 DT C5 C6 doub N N 234 DT C7 H71 sing N N 235 DT C7 H72 sing N N 236 DT C7 H73 sing N N 237 DT C6 H6 sing N N 238 GLN N CA sing N N 239 GLN N H sing N N 240 GLN N H2 sing N N 241 GLN CA C sing N N 242 GLN CA CB sing N N 243 GLN CA HA sing N N 244 GLN C O doub N N 245 GLN C OXT sing N N 246 GLN CB CG sing N N 247 GLN CB HB2 sing N N 248 GLN CB HB3 sing N N 249 GLN CG CD sing N N 250 GLN CG HG2 sing N N 251 GLN CG HG3 sing N N 252 GLN CD OE1 doub N N 253 GLN CD NE2 sing N N 254 GLN NE2 HE21 sing N N 255 GLN NE2 HE22 sing N N 256 GLN OXT HXT sing N N 257 GLU N CA sing N N 258 GLU N H sing N N 259 GLU N H2 sing N N 260 GLU CA C sing N N 261 GLU CA CB sing N N 262 GLU CA HA sing N N 263 GLU C O doub N N 264 GLU C OXT sing N N 265 GLU CB CG sing N N 266 GLU CB HB2 sing N N 267 GLU CB HB3 sing N N 268 GLU CG CD sing N N 269 GLU CG HG2 sing N N 270 GLU CG HG3 sing N N 271 GLU CD OE1 doub N N 272 GLU CD OE2 sing N N 273 GLU OE2 HE2 sing N N 274 GLU OXT HXT sing N N 275 GLY N CA sing N N 276 GLY N H sing N N 277 GLY N H2 sing N N 278 GLY CA C sing N N 279 GLY CA HA2 sing N N 280 GLY CA HA3 sing N N 281 GLY C O doub N N 282 GLY C OXT sing N N 283 GLY OXT HXT sing N N 284 HIS N CA sing N N 285 HIS N H sing N N 286 HIS N H2 sing N N 287 HIS CA C sing N N 288 HIS CA CB sing N N 289 HIS CA HA sing N N 290 HIS C O doub N N 291 HIS C OXT sing N N 292 HIS CB CG sing N N 293 HIS CB HB2 sing N N 294 HIS CB HB3 sing N N 295 HIS CG ND1 sing Y N 296 HIS CG CD2 doub Y N 297 HIS ND1 CE1 doub Y N 298 HIS ND1 HD1 sing N N 299 HIS CD2 NE2 sing Y N 300 HIS CD2 HD2 sing N N 301 HIS CE1 NE2 sing Y N 302 HIS CE1 HE1 sing N N 303 HIS NE2 HE2 sing N N 304 HIS OXT HXT sing N N 305 HOH O H1 sing N N 306 HOH O H2 sing N N 307 ILE N CA sing N N 308 ILE N H sing N N 309 ILE N H2 sing N N 310 ILE CA C sing N N 311 ILE CA CB sing N N 312 ILE CA HA sing N N 313 ILE C O doub N N 314 ILE C OXT sing N N 315 ILE CB CG1 sing N N 316 ILE CB CG2 sing N N 317 ILE CB HB sing N N 318 ILE CG1 CD1 sing N N 319 ILE CG1 HG12 sing N N 320 ILE CG1 HG13 sing N N 321 ILE CG2 HG21 sing N N 322 ILE CG2 HG22 sing N N 323 ILE CG2 HG23 sing N N 324 ILE CD1 HD11 sing N N 325 ILE CD1 HD12 sing N N 326 ILE CD1 HD13 sing N N 327 ILE OXT HXT sing N N 328 LEU N CA sing N N 329 LEU N H sing N N 330 LEU N H2 sing N N 331 LEU CA C sing N N 332 LEU CA CB sing N N 333 LEU CA HA sing N N 334 LEU C O doub N N 335 LEU C OXT sing N N 336 LEU CB CG sing N N 337 LEU CB HB2 sing N N 338 LEU CB HB3 sing N N 339 LEU CG CD1 sing N N 340 LEU CG CD2 sing N N 341 LEU CG HG sing N N 342 LEU CD1 HD11 sing N N 343 LEU CD1 HD12 sing N N 344 LEU CD1 HD13 sing N N 345 LEU CD2 HD21 sing N N 346 LEU CD2 HD22 sing N N 347 LEU CD2 HD23 sing N N 348 LEU OXT HXT sing N N 349 LYS N CA sing N N 350 LYS N H sing N N 351 LYS N H2 sing N N 352 LYS CA C sing N N 353 LYS CA CB sing N N 354 LYS CA HA sing N N 355 LYS C O doub N N 356 LYS C OXT sing N N 357 LYS CB CG sing N N 358 LYS CB HB2 sing N N 359 LYS CB HB3 sing N N 360 LYS CG CD sing N N 361 LYS CG HG2 sing N N 362 LYS CG HG3 sing N N 363 LYS CD CE sing N N 364 LYS CD HD2 sing N N 365 LYS CD HD3 sing N N 366 LYS CE NZ sing N N 367 LYS CE HE2 sing N N 368 LYS CE HE3 sing N N 369 LYS NZ HZ1 sing N N 370 LYS NZ HZ2 sing N N 371 LYS NZ HZ3 sing N N 372 LYS OXT HXT sing N N 373 MET N CA sing N N 374 MET N H sing N N 375 MET N H2 sing N N 376 MET CA C sing N N 377 MET CA CB sing N N 378 MET CA HA sing N N 379 MET C O doub N N 380 MET C OXT sing N N 381 MET CB CG sing N N 382 MET CB HB2 sing N N 383 MET CB HB3 sing N N 384 MET CG SD sing N N 385 MET CG HG2 sing N N 386 MET CG HG3 sing N N 387 MET SD CE sing N N 388 MET CE HE1 sing N N 389 MET CE HE2 sing N N 390 MET CE HE3 sing N N 391 MET OXT HXT sing N N 392 ORP C1 O1 sing N N 393 ORP C1 C2 sing N N 394 ORP C1 O4 sing N N 395 ORP C1 H1 sing N N 396 ORP O1 HO1 sing N N 397 ORP C2 C3 sing N N 398 ORP C2 H21 sing N N 399 ORP C2 H22 sing N N 400 ORP C3 O3 sing N N 401 ORP C3 C4 sing N N 402 ORP C3 H3 sing N N 403 ORP O3 HO3 sing N N 404 ORP C4 O4 sing N N 405 ORP C4 C5 sing N N 406 ORP C4 H4 sing N N 407 ORP C5 O5 sing N N 408 ORP C5 H51 sing N N 409 ORP C5 H52 sing N N 410 ORP O5 P sing N N 411 ORP P O1P doub N N 412 ORP P O2P sing N N 413 ORP P O3P sing N N 414 ORP O2P HOP2 sing N N 415 ORP O3P HOP3 sing N N 416 PHE N CA sing N N 417 PHE N H sing N N 418 PHE N H2 sing N N 419 PHE CA C sing N N 420 PHE CA CB sing N N 421 PHE CA HA sing N N 422 PHE C O doub N N 423 PHE C OXT sing N N 424 PHE CB CG sing N N 425 PHE CB HB2 sing N N 426 PHE CB HB3 sing N N 427 PHE CG CD1 doub Y N 428 PHE CG CD2 sing Y N 429 PHE CD1 CE1 sing Y N 430 PHE CD1 HD1 sing N N 431 PHE CD2 CE2 doub Y N 432 PHE CD2 HD2 sing N N 433 PHE CE1 CZ doub Y N 434 PHE CE1 HE1 sing N N 435 PHE CE2 CZ sing Y N 436 PHE CE2 HE2 sing N N 437 PHE CZ HZ sing N N 438 PHE OXT HXT sing N N 439 PRO N CA sing N N 440 PRO N CD sing N N 441 PRO N H sing N N 442 PRO CA C sing N N 443 PRO CA CB sing N N 444 PRO CA HA sing N N 445 PRO C O doub N N 446 PRO C OXT sing N N 447 PRO CB CG sing N N 448 PRO CB HB2 sing N N 449 PRO CB HB3 sing N N 450 PRO CG CD sing N N 451 PRO CG HG2 sing N N 452 PRO CG HG3 sing N N 453 PRO CD HD2 sing N N 454 PRO CD HD3 sing N N 455 PRO OXT HXT sing N N 456 SER N CA sing N N 457 SER N H sing N N 458 SER N H2 sing N N 459 SER CA C sing N N 460 SER CA CB sing N N 461 SER CA HA sing N N 462 SER C O doub N N 463 SER C OXT sing N N 464 SER CB OG sing N N 465 SER CB HB2 sing N N 466 SER CB HB3 sing N N 467 SER OG HG sing N N 468 SER OXT HXT sing N N 469 THR N CA sing N N 470 THR N H sing N N 471 THR N H2 sing N N 472 THR CA C sing N N 473 THR CA CB sing N N 474 THR CA HA sing N N 475 THR C O doub N N 476 THR C OXT sing N N 477 THR CB OG1 sing N N 478 THR CB CG2 sing N N 479 THR CB HB sing N N 480 THR OG1 HG1 sing N N 481 THR CG2 HG21 sing N N 482 THR CG2 HG22 sing N N 483 THR CG2 HG23 sing N N 484 THR OXT HXT sing N N 485 TRP N CA sing N N 486 TRP N H sing N N 487 TRP N H2 sing N N 488 TRP CA C sing N N 489 TRP CA CB sing N N 490 TRP CA HA sing N N 491 TRP C O doub N N 492 TRP C OXT sing N N 493 TRP CB CG sing N N 494 TRP CB HB2 sing N N 495 TRP CB HB3 sing N N 496 TRP CG CD1 doub Y N 497 TRP CG CD2 sing Y N 498 TRP CD1 NE1 sing Y N 499 TRP CD1 HD1 sing N N 500 TRP CD2 CE2 doub Y N 501 TRP CD2 CE3 sing Y N 502 TRP NE1 CE2 sing Y N 503 TRP NE1 HE1 sing N N 504 TRP CE2 CZ2 sing Y N 505 TRP CE3 CZ3 doub Y N 506 TRP CE3 HE3 sing N N 507 TRP CZ2 CH2 doub Y N 508 TRP CZ2 HZ2 sing N N 509 TRP CZ3 CH2 sing Y N 510 TRP CZ3 HZ3 sing N N 511 TRP CH2 HH2 sing N N 512 TRP OXT HXT sing N N 513 TYR N CA sing N N 514 TYR N H sing N N 515 TYR N H2 sing N N 516 TYR CA C sing N N 517 TYR CA CB sing N N 518 TYR CA HA sing N N 519 TYR C O doub N N 520 TYR C OXT sing N N 521 TYR CB CG sing N N 522 TYR CB HB2 sing N N 523 TYR CB HB3 sing N N 524 TYR CG CD1 doub Y N 525 TYR CG CD2 sing Y N 526 TYR CD1 CE1 sing Y N 527 TYR CD1 HD1 sing N N 528 TYR CD2 CE2 doub Y N 529 TYR CD2 HD2 sing N N 530 TYR CE1 CZ doub Y N 531 TYR CE1 HE1 sing N N 532 TYR CE2 CZ sing Y N 533 TYR CE2 HE2 sing N N 534 TYR CZ OH sing N N 535 TYR OH HH sing N N 536 TYR OXT HXT sing N N 537 VAL N CA sing N N 538 VAL N H sing N N 539 VAL N H2 sing N N 540 VAL CA C sing N N 541 VAL CA CB sing N N 542 VAL CA HA sing N N 543 VAL C O doub N N 544 VAL C OXT sing N N 545 VAL CB CG1 sing N N 546 VAL CB CG2 sing N N 547 VAL CB HB sing N N 548 VAL CG1 HG11 sing N N 549 VAL CG1 HG12 sing N N 550 VAL CG1 HG13 sing N N 551 VAL CG2 HG21 sing N N 552 VAL CG2 HG22 sing N N 553 VAL CG2 HG23 sing N N 554 VAL OXT HXT sing N N 555 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5CLA 'double helix' 5CLA 'a-form double helix' 5CLA 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 12 1_555 0.167 -0.130 0.142 -1.182 -14.302 4.414 1 B_DC1:DG24_C B 1 ? C 24 ? 19 1 1 B DC 2 1_555 C DG 11 1_555 0.766 -0.292 0.449 -11.586 -10.600 4.990 2 B_DC2:DG23_C B 2 ? C 23 ? 19 1 1 B DC 3 1_555 C DG 10 1_555 0.146 -0.177 0.074 -4.789 -1.394 1.176 3 B_DC3:DG22_C B 3 ? C 22 ? 19 1 1 B DG 4 1_555 C DC 9 1_555 -0.243 -0.183 0.016 4.455 -4.989 -0.484 4 B_DG4:DC21_C B 4 ? C 21 ? 19 1 1 B DA 5 1_555 C DT 8 1_555 0.058 -0.136 0.015 -2.488 -10.197 3.375 5 B_DA5:DT20_C B 5 ? C 20 ? 20 1 1 B DA 7 1_555 C DT 6 1_555 0.062 -0.077 0.072 4.229 -23.393 -2.703 6 B_DA7:DT18_C B 7 ? C 18 ? 20 1 1 B DG 8 1_555 C DC 5 1_555 -0.345 -0.150 0.001 -12.534 -17.655 5.429 7 B_DG8:DC17_C B 8 ? C 17 ? 19 1 1 B DT 9 1_555 C DA 4 1_555 -0.289 -0.121 -0.100 -5.698 -8.778 -0.617 8 B_DT9:DA16_C B 9 ? C 16 ? 20 1 1 B DC 10 1_555 C DG 3 1_555 0.391 -0.098 -0.077 -2.455 -8.950 0.215 9 B_DC10:DG15_C B 10 ? C 15 ? 19 1 1 B DC 11 1_555 C DG 2 1_555 -0.344 -0.271 0.040 -1.201 -2.737 -2.006 10 B_DC11:DG14_C B 11 ? C 14 ? 19 1 1 B DG 12 1_555 C DC 1 1_555 -0.021 -0.220 0.101 16.913 -1.005 -2.179 11 B_DG12:DC13_C B 12 ? C 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 12 1_555 B DC 2 1_555 C DG 11 1_555 0.304 -0.720 3.495 0.901 4.144 40.889 -1.501 -0.330 3.414 5.913 -1.286 41.099 1 BB_DC1DC2:DG23DG24_CC B 1 ? C 24 ? B 2 ? C 23 ? 1 B DC 2 1_555 C DG 11 1_555 B DC 3 1_555 C DG 10 1_555 -0.152 -0.665 3.087 5.636 3.991 28.919 -2.073 1.392 2.890 7.851 -11.086 29.715 2 BB_DC2DC3:DG22DG23_CC B 2 ? C 23 ? B 3 ? C 22 ? 1 B DC 3 1_555 C DG 10 1_555 B DG 4 1_555 C DC 9 1_555 -0.082 -0.106 3.043 0.804 7.118 32.788 -1.267 0.265 2.953 12.425 -1.404 33.540 3 BB_DC3DG4:DC21DG22_CC B 3 ? C 22 ? B 4 ? C 21 ? 1 B DG 4 1_555 C DC 9 1_555 B DA 5 1_555 C DT 8 1_555 -0.232 -0.402 3.352 -2.607 2.592 37.683 -0.960 0.015 3.326 4.002 4.024 37.855 4 BB_DG4DA5:DT20DC21_CC B 4 ? C 21 ? B 5 ? C 20 ? 1 B DA 5 1_555 C DT 8 1_555 B DA 7 1_555 C DT 6 1_555 0.481 -0.258 6.573 -1.919 8.866 58.525 -1.167 -0.684 6.459 9.009 1.951 59.162 5 BB_DA5DA7:DT18DT20_CC B 5 ? C 20 ? B 7 ? C 18 ? 1 B DA 7 1_555 C DT 6 1_555 B DG 8 1_555 C DC 5 1_555 0.643 -1.474 3.624 1.460 9.031 35.224 -3.695 -0.815 3.185 14.622 -2.364 36.356 6 BB_DA7DG8:DC17DT18_CC B 7 ? C 18 ? B 8 ? C 17 ? 1 B DG 8 1_555 C DC 5 1_555 B DT 9 1_555 C DA 4 1_555 -0.957 -0.922 3.092 1.814 6.142 30.106 -2.831 2.127 2.792 11.658 -3.444 30.765 7 BB_DG8DT9:DA16DC17_CC B 8 ? C 17 ? B 9 ? C 16 ? 1 B DT 9 1_555 C DA 4 1_555 B DC 10 1_555 C DG 3 1_555 0.074 -0.425 3.231 1.079 3.095 35.737 -1.125 0.031 3.185 5.031 -1.754 35.882 8 BB_DT9DC10:DG15DA16_CC B 9 ? C 16 ? B 10 ? C 15 ? 1 B DC 10 1_555 C DG 3 1_555 B DC 11 1_555 C DG 2 1_555 0.400 -0.563 3.327 1.125 2.224 30.270 -1.527 -0.535 3.290 4.250 -2.150 30.370 9 BB_DC10DC11:DG14DG15_CC B 10 ? C 15 ? B 11 ? C 14 ? 1 B DC 11 1_555 C DG 2 1_555 B DG 12 1_555 C DC 1 1_555 -0.341 -0.041 3.004 -4.103 5.308 31.865 -0.929 -0.054 2.978 9.536 7.372 32.546 10 BB_DC11DG12:DC13DG14_CC B 11 ? C 14 ? B 12 ? C 13 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number MCB-1122098 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '7-methyl-3H-imidazo[4,5-c]pyridin-4-amine' 54K 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3BVS _pdbx_initial_refinement_model.details 'PDB entry 3BVS' #