HEADER MEMBRANE PROTEIN 16-JUL-15 5CMB TITLE MNEMIOPSIS LEIDYI ML032222A IGLUR LBD R703K MUTANT GLYCINE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ML032222A IGLUR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MNEMIOPSIS LEIDYI; SOURCE 3 ORGANISM_COMMON: SEA WALNUT; SOURCE 4 ORGANISM_TAXID: 27923; SOURCE 5 GENE: ML032222A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22 KEYWDS MEMBRANE PROTEIN, GLUTAMATE RECEPTOR, ION CHANNEL EXPDTA X-RAY DIFFRACTION AUTHOR M.L.MAYER,A.THOMAS REVDAT 4 27-SEP-23 5CMB 1 JRNL REMARK LINK REVDAT 3 16-NOV-16 5CMB 1 JRNL REVDAT 2 09-NOV-16 5CMB 1 JRNL REVDAT 1 20-JUL-16 5CMB 0 JRNL AUTH A.YU,R.ALBERSTEIN,A.THOMAS,A.ZIMMET,R.GREY,M.L.MAYER,A.Y.LAU JRNL TITL MOLECULAR LOCK REGULATES BINDING OF GLYCINE TO A PRIMITIVE JRNL TITL 2 NMDA RECEPTOR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E6786 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27791085 JRNL DOI 10.1073/PNAS.1607010113 REMARK 2 REMARK 2 RESOLUTION. 1.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 121955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 6166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0048 - 4.1599 1.00 3938 258 0.1403 0.1597 REMARK 3 2 4.1599 - 3.3024 1.00 3980 220 0.1232 0.1565 REMARK 3 3 3.3024 - 2.8851 1.00 3966 202 0.1407 0.1541 REMARK 3 4 2.8851 - 2.6214 1.00 3962 222 0.1437 0.1528 REMARK 3 5 2.6214 - 2.4335 1.00 3972 190 0.1410 0.1837 REMARK 3 6 2.4335 - 2.2900 1.00 3953 195 0.1362 0.1630 REMARK 3 7 2.2900 - 2.1754 1.00 3943 204 0.1336 0.1539 REMARK 3 8 2.1754 - 2.0807 1.00 3957 201 0.1338 0.1566 REMARK 3 9 2.0807 - 2.0006 1.00 4002 202 0.1355 0.1515 REMARK 3 10 2.0006 - 1.9316 1.00 3919 207 0.1420 0.1690 REMARK 3 11 1.9316 - 1.8712 1.00 3956 217 0.1445 0.1599 REMARK 3 12 1.8712 - 1.8177 1.00 3940 203 0.1430 0.1581 REMARK 3 13 1.8177 - 1.7698 1.00 3927 216 0.1371 0.1535 REMARK 3 14 1.7698 - 1.7266 1.00 3990 209 0.1422 0.1712 REMARK 3 15 1.7266 - 1.6874 1.00 3914 207 0.1447 0.1646 REMARK 3 16 1.6874 - 1.6515 1.00 3953 209 0.1470 0.1802 REMARK 3 17 1.6515 - 1.6184 1.00 3946 216 0.1438 0.1920 REMARK 3 18 1.6184 - 1.5879 1.00 3940 199 0.1438 0.1717 REMARK 3 19 1.5879 - 1.5595 1.00 3930 218 0.1496 0.1844 REMARK 3 20 1.5595 - 1.5331 1.00 3952 214 0.1493 0.1861 REMARK 3 21 1.5331 - 1.5084 1.00 3964 205 0.1522 0.1810 REMARK 3 22 1.5084 - 1.4852 1.00 3909 212 0.1571 0.1842 REMARK 3 23 1.4852 - 1.4633 1.00 3912 210 0.1596 0.1868 REMARK 3 24 1.4633 - 1.4427 1.00 3961 206 0.1671 0.1818 REMARK 3 25 1.4427 - 1.4232 1.00 3965 199 0.1764 0.1758 REMARK 3 26 1.4232 - 1.4047 1.00 3902 219 0.1771 0.2037 REMARK 3 27 1.4047 - 1.3872 0.96 3784 190 0.2017 0.2385 REMARK 3 28 1.3872 - 1.3705 0.89 3508 185 0.2159 0.2299 REMARK 3 29 1.3705 - 1.3545 0.80 3134 182 0.2153 0.2556 REMARK 3 30 1.3545 - 1.3393 0.69 2710 149 0.2183 0.2313 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4226 REMARK 3 ANGLE : 1.239 5716 REMARK 3 CHIRALITY : 0.068 609 REMARK 3 PLANARITY : 0.006 748 REMARK 3 DIHEDRAL : 12.878 1556 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 5:43) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4900 54.4283 49.7984 REMARK 3 T TENSOR REMARK 3 T11: 0.1148 T22: 0.0884 REMARK 3 T33: 0.1439 T12: 0.0182 REMARK 3 T13: -0.0032 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.3010 L22: 0.0985 REMARK 3 L33: 0.1635 L12: -0.0469 REMARK 3 L13: 0.0187 L23: 0.0001 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: -0.0215 S13: -0.0659 REMARK 3 S21: -0.0309 S22: -0.0309 S23: -0.0168 REMARK 3 S31: 0.0567 S32: 0.0780 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 44:72) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5411 57.4647 54.4017 REMARK 3 T TENSOR REMARK 3 T11: 0.1030 T22: 0.0838 REMARK 3 T33: 0.1673 T12: -0.0013 REMARK 3 T13: -0.0159 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.0788 L22: 0.3285 REMARK 3 L33: 0.4247 L12: -0.1437 REMARK 3 L13: 0.1264 L23: -0.0789 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: -0.0436 S13: -0.0406 REMARK 3 S21: 0.0149 S22: -0.0056 S23: 0.0318 REMARK 3 S31: 0.0680 S32: -0.0151 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 73:143) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6548 61.5562 42.7634 REMARK 3 T TENSOR REMARK 3 T11: 0.1058 T22: 0.0918 REMARK 3 T33: 0.1301 T12: -0.0137 REMARK 3 T13: -0.0083 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.7456 L22: 0.2002 REMARK 3 L33: 0.3107 L12: -0.0364 REMARK 3 L13: -0.0891 L23: 0.0974 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: 0.0933 S13: -0.0083 REMARK 3 S21: -0.0491 S22: -0.0057 S23: 0.0130 REMARK 3 S31: -0.0087 S32: -0.0563 S33: 0.0018 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 144:220) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6076 59.6191 36.8872 REMARK 3 T TENSOR REMARK 3 T11: 0.0981 T22: 0.1050 REMARK 3 T33: 0.1390 T12: -0.0056 REMARK 3 T13: -0.0085 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.8387 L22: 0.1426 REMARK 3 L33: 0.5434 L12: 0.2004 REMARK 3 L13: 0.1740 L23: -0.1230 REMARK 3 S TENSOR REMARK 3 S11: -0.0927 S12: 0.1954 S13: -0.0006 REMARK 3 S21: -0.0539 S22: 0.0429 S23: 0.0555 REMARK 3 S31: 0.0314 S32: 0.0392 S33: -0.0090 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 221:251) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0286 68.8714 47.1636 REMARK 3 T TENSOR REMARK 3 T11: 0.1094 T22: 0.1012 REMARK 3 T33: 0.1279 T12: -0.0098 REMARK 3 T13: -0.0018 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.2794 L22: 0.1001 REMARK 3 L33: 0.0816 L12: -0.0331 REMARK 3 L13: -0.0216 L23: -0.0890 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: 0.0466 S13: 0.0341 REMARK 3 S21: -0.0200 S22: -0.0180 S23: -0.0433 REMARK 3 S31: -0.0181 S32: -0.0286 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 1:43) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6656 94.8085 49.3467 REMARK 3 T TENSOR REMARK 3 T11: 0.0942 T22: 0.0764 REMARK 3 T33: 0.0685 T12: 0.0138 REMARK 3 T13: 0.0044 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.6472 L22: 0.2282 REMARK 3 L33: 0.3554 L12: -0.0153 REMARK 3 L13: 0.0497 L23: 0.2696 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: 0.0056 S13: -0.0128 REMARK 3 S21: 0.0215 S22: -0.0148 S23: 0.0200 REMARK 3 S31: -0.0480 S32: -0.0830 S33: 0.0048 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 44:89) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6616 93.1849 54.0833 REMARK 3 T TENSOR REMARK 3 T11: 0.0706 T22: 0.0711 REMARK 3 T33: 0.0648 T12: -0.0049 REMARK 3 T13: 0.0015 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.2231 L22: 0.4029 REMARK 3 L33: 0.5869 L12: -0.2059 REMARK 3 L13: -0.1158 L23: 0.2306 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: -0.0832 S13: 0.0145 REMARK 3 S21: 0.0095 S22: 0.0066 S23: -0.0229 REMARK 3 S31: -0.0319 S32: 0.0313 S33: 0.0067 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 90:220) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1187 88.3308 36.0162 REMARK 3 T TENSOR REMARK 3 T11: 0.0807 T22: 0.0785 REMARK 3 T33: 0.0629 T12: -0.0034 REMARK 3 T13: 0.0053 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.6905 L22: -0.0241 REMARK 3 L33: 1.0120 L12: 0.0970 REMARK 3 L13: -0.5989 L23: -0.1546 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: 0.0825 S13: -0.0784 REMARK 3 S21: -0.0169 S22: -0.0031 S23: -0.0244 REMARK 3 S31: 0.0029 S32: -0.0174 S33: 0.0229 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 221:244) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3155 79.4123 50.3710 REMARK 3 T TENSOR REMARK 3 T11: 0.1032 T22: 0.1043 REMARK 3 T33: 0.1292 T12: -0.0042 REMARK 3 T13: 0.0014 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.2021 L22: 0.0102 REMARK 3 L33: 0.0486 L12: -0.0750 REMARK 3 L13: -0.0788 L23: 0.0469 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: 0.0091 S13: -0.0368 REMARK 3 S21: -0.0017 S22: -0.0391 S23: -0.0023 REMARK 3 S31: 0.0149 S32: -0.0032 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 245:255) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6798 89.2804 29.0969 REMARK 3 T TENSOR REMARK 3 T11: 0.1160 T22: 0.3136 REMARK 3 T33: 0.1067 T12: -0.0268 REMARK 3 T13: -0.0194 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.1017 L22: 0.3245 REMARK 3 L33: 0.1627 L12: -0.1976 REMARK 3 L13: -0.1248 L23: 0.2172 REMARK 3 S TENSOR REMARK 3 S11: -0.1725 S12: 0.5739 S13: -0.0275 REMARK 3 S21: -0.0054 S22: -0.0425 S23: -0.0333 REMARK 3 S31: 0.0159 S32: 0.2523 S33: -0.0281 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 124741 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.340 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.36500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4YKI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 24% PEG 8K, 100 MM REMARK 280 CACODYLATE, 150 MM MGS04. PROTEIN BUFFER: 150 MM NACL, 10 MM REMARK 280 HEPES, PH 7.0, 0.5 MM EDTA, 10 MM GLYCINE, PH 6.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.69450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 252 REMARK 465 SER A 253 REMARK 465 VAL A 254 REMARK 465 CYS A 255 REMARK 465 SER A 256 REMARK 465 SER B 256 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 17 93.03 -160.22 REMARK 500 ASP A 134 12.85 -144.63 REMARK 500 ASP A 170 -178.91 -170.05 REMARK 500 ASP A 187 -143.20 -152.42 REMARK 500 GLN A 210 139.64 75.80 REMARK 500 GLU B 17 93.11 -162.74 REMARK 500 THR B 123 -169.41 -128.88 REMARK 500 ASP B 187 -140.40 -151.63 REMARK 500 GLN B 210 138.65 71.54 REMARK 500 ASN B 252 -158.30 52.61 REMARK 500 SER B 253 144.18 -173.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 252 SER B 253 148.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 749 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 750 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B 828 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B 829 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH B 830 DISTANCE = 6.41 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 OD1 REMARK 620 2 GLU A 213 OE2 85.6 REMARK 620 3 HOH A 431 O 88.2 90.9 REMARK 620 4 ASP B 110 OD1 93.7 175.3 93.7 REMARK 620 5 GLU B 213 OE2 173.4 95.4 85.3 85.8 REMARK 620 6 HOH B 421 O 96.2 85.1 173.9 90.4 90.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YKI RELATED DB: PDB REMARK 900 WILD TYPE ML032222A LIGAND BINDING DOMAIN REMARK 900 RELATED ID: 5CMC RELATED DB: PDB DBREF 5CMB A 1 256 PDB 5CMB 5CMB 1 256 DBREF 5CMB B 1 256 PDB 5CMB 5CMB 1 256 SEQRES 1 A 256 GLY SER LYS ASN LEU ILE GLY ARG HIS LEU ARG LEU GLY SEQRES 2 A 256 SER VAL GLU GLU GLN PRO PHE MET PHE PHE ALA THR GLU SEQRES 3 A 256 GLY CYS GLU GLY ASN ASP CYS TRP SER GLY MET VAL ASN SEQRES 4 A 256 ASP MET VAL VAL LYS LEU SER GLU ASP LEU GLY PHE THR SEQRES 5 A 256 TYR GLU TYR ILE GLN PRO ASP ASP ARG LYS PHE GLY ALA SEQRES 6 A 256 LEU ASN LYS THR THR ASN GLU TRP ASN GLY MET ILE ARG SEQRES 7 A 256 ASP LEU LEU ASP ASP LYS THR ASP MET ILE ALA ILE ASP SEQRES 8 A 256 LEU SER THR ASN SER ALA ARG LYS SER ALA ILE ASP TYR SEQRES 9 A 256 SER PHE PRO PHE MET ASP ALA GLY ILE LYS ALA VAL VAL SEQRES 10 A 256 LYS GLY GLU GLY THR THR LEU ASN GLN VAL LEU GLU LEU SEQRES 11 A 256 LEU ASP GLN ASP LYS TYR LYS TRP GLY VAL ILE GLY SER SEQRES 12 A 256 LYS HIS PRO GLU THR LEU LEU LYS THR HIS ARG ASP SER SEQRES 13 A 256 ARG TYR SER ARG LEU VAL ASP GLU GLY VAL GLU LEU LYS SEQRES 14 A 256 ASP LEU ASN HIS ALA ILE GLU THR LEU ARG GLY GLY LEU SEQRES 15 A 256 PHE VAL PHE ILE ASP GLU GLY PRO VAL LEU ALA HIS ASN SEQRES 16 A 256 LEU ILE SER ASP CYS ASP VAL PHE SER VAL GLY GLU GLU SEQRES 17 A 256 PHE GLN SER PHE GLU TYR ALA PHE GLY LEU PRO LYS ASP SEQRES 18 A 256 SER PRO TYR LYS SER LEU ILE ASP SER HIS LEU LEU LYS SEQRES 19 A 256 PHE ARG GLU GLU GLY PHE ILE ASP ILE LEU TRP GLU LYS SEQRES 20 A 256 TRP SER SER GLY ASN SER VAL CYS SER SEQRES 1 B 256 GLY SER LYS ASN LEU ILE GLY ARG HIS LEU ARG LEU GLY SEQRES 2 B 256 SER VAL GLU GLU GLN PRO PHE MET PHE PHE ALA THR GLU SEQRES 3 B 256 GLY CYS GLU GLY ASN ASP CYS TRP SER GLY MET VAL ASN SEQRES 4 B 256 ASP MET VAL VAL LYS LEU SER GLU ASP LEU GLY PHE THR SEQRES 5 B 256 TYR GLU TYR ILE GLN PRO ASP ASP ARG LYS PHE GLY ALA SEQRES 6 B 256 LEU ASN LYS THR THR ASN GLU TRP ASN GLY MET ILE ARG SEQRES 7 B 256 ASP LEU LEU ASP ASP LYS THR ASP MET ILE ALA ILE ASP SEQRES 8 B 256 LEU SER THR ASN SER ALA ARG LYS SER ALA ILE ASP TYR SEQRES 9 B 256 SER PHE PRO PHE MET ASP ALA GLY ILE LYS ALA VAL VAL SEQRES 10 B 256 LYS GLY GLU GLY THR THR LEU ASN GLN VAL LEU GLU LEU SEQRES 11 B 256 LEU ASP GLN ASP LYS TYR LYS TRP GLY VAL ILE GLY SER SEQRES 12 B 256 LYS HIS PRO GLU THR LEU LEU LYS THR HIS ARG ASP SER SEQRES 13 B 256 ARG TYR SER ARG LEU VAL ASP GLU GLY VAL GLU LEU LYS SEQRES 14 B 256 ASP LEU ASN HIS ALA ILE GLU THR LEU ARG GLY GLY LEU SEQRES 15 B 256 PHE VAL PHE ILE ASP GLU GLY PRO VAL LEU ALA HIS ASN SEQRES 16 B 256 LEU ILE SER ASP CYS ASP VAL PHE SER VAL GLY GLU GLU SEQRES 17 B 256 PHE GLN SER PHE GLU TYR ALA PHE GLY LEU PRO LYS ASP SEQRES 18 B 256 SER PRO TYR LYS SER LEU ILE ASP SER HIS LEU LEU LYS SEQRES 19 B 256 PHE ARG GLU GLU GLY PHE ILE ASP ILE LEU TRP GLU LYS SEQRES 20 B 256 TRP SER SER GLY ASN SER VAL CYS SER HET GLY A 301 10 HET MG A 302 1 HET GLY B 301 10 HET SO4 B 302 5 HETNAM GLY GLYCINE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 3 GLY 2(C2 H5 N O2) FORMUL 4 MG MG 2+ FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *780(H2 O) HELIX 1 AA1 GLU A 29 ASP A 32 5 4 HELIX 2 AA2 GLY A 36 GLY A 50 1 15 HELIX 3 AA3 ASN A 74 ASP A 82 1 9 HELIX 4 AA4 ASN A 95 SER A 100 1 6 HELIX 5 AA5 GLN A 126 GLN A 133 5 8 HELIX 6 AA6 LYS A 144 HIS A 153 1 10 HELIX 7 AA7 SER A 156 GLY A 165 1 10 HELIX 8 AA8 ASP A 170 GLY A 180 1 11 HELIX 9 AA9 GLY A 189 LEU A 196 1 8 HELIX 10 AB1 TYR A 224 GLU A 238 1 15 HELIX 11 AB2 GLY A 239 SER A 249 1 11 HELIX 12 AB3 GLU B 29 ASP B 32 5 4 HELIX 13 AB4 GLY B 36 GLY B 50 1 15 HELIX 14 AB5 ASN B 74 ASP B 82 1 9 HELIX 15 AB6 ASN B 95 ILE B 102 1 8 HELIX 16 AB7 GLN B 126 GLN B 133 5 8 HELIX 17 AB8 LYS B 144 HIS B 153 1 10 HELIX 18 AB9 SER B 156 GLY B 165 1 10 HELIX 19 AC1 ASP B 170 GLY B 180 1 11 HELIX 20 AC2 GLY B 189 LEU B 196 1 8 HELIX 21 AC3 TYR B 224 GLU B 238 1 15 HELIX 22 AC4 GLY B 239 SER B 249 1 11 SHEET 1 AA1 8 THR A 52 ILE A 56 0 SHEET 2 AA1 8 HIS A 9 GLY A 13 1 N LEU A 12 O GLU A 54 SHEET 3 AA1 8 MET A 87 SER A 93 1 O MET A 87 N GLY A 13 SHEET 4 AA1 8 PHE A 209 LEU A 218 -1 O GLY A 217 N ILE A 88 SHEET 5 AA1 8 MET A 109 LYS A 118 -1 N ILE A 113 O PHE A 209 SHEET 6 AA1 8 PHE A 183 GLU A 188 -1 O ASP A 187 N LYS A 114 SHEET 7 AA1 8 LYS A 137 ILE A 141 1 N LYS A 137 O VAL A 184 SHEET 8 AA1 8 VAL A 166 LEU A 168 1 O VAL A 166 N TRP A 138 SHEET 1 AA2 4 ASP A 103 TYR A 104 0 SHEET 2 AA2 4 PHE A 209 LEU A 218 -1 O LEU A 218 N ASP A 103 SHEET 3 AA2 4 MET A 109 LYS A 118 -1 N ILE A 113 O PHE A 209 SHEET 4 AA2 4 VAL A 202 SER A 204 -1 O PHE A 203 N VAL A 117 SHEET 1 AA3 2 PHE A 22 PHE A 23 0 SHEET 2 AA3 2 TRP A 34 SER A 35 -1 O SER A 35 N PHE A 22 SHEET 1 AA4 2 LEU A 66 ASN A 67 0 SHEET 2 AA4 2 GLU A 72 TRP A 73 -1 O GLU A 72 N ASN A 67 SHEET 1 AA5 8 THR B 52 ILE B 56 0 SHEET 2 AA5 8 HIS B 9 GLY B 13 1 N LEU B 12 O GLU B 54 SHEET 3 AA5 8 MET B 87 SER B 93 1 O MET B 87 N GLY B 13 SHEET 4 AA5 8 PHE B 209 LEU B 218 -1 O GLY B 217 N ILE B 88 SHEET 5 AA5 8 MET B 109 LYS B 118 -1 N ALA B 111 O PHE B 212 SHEET 6 AA5 8 PHE B 183 GLU B 188 -1 O ASP B 187 N LYS B 114 SHEET 7 AA5 8 LYS B 137 ILE B 141 1 N GLY B 139 O ILE B 186 SHEET 8 AA5 8 VAL B 166 LEU B 168 1 O VAL B 166 N TRP B 138 SHEET 1 AA6 4 ASP B 103 TYR B 104 0 SHEET 2 AA6 4 PHE B 209 LEU B 218 -1 O LEU B 218 N ASP B 103 SHEET 3 AA6 4 MET B 109 LYS B 118 -1 N ALA B 111 O PHE B 212 SHEET 4 AA6 4 VAL B 202 SER B 204 -1 O PHE B 203 N VAL B 117 SHEET 1 AA7 2 PHE B 22 PHE B 23 0 SHEET 2 AA7 2 TRP B 34 SER B 35 -1 O SER B 35 N PHE B 22 SHEET 1 AA8 2 LEU B 66 ASN B 67 0 SHEET 2 AA8 2 GLU B 72 TRP B 73 -1 O GLU B 72 N ASN B 67 SSBOND 1 CYS A 28 CYS A 33 1555 1555 2.11 SSBOND 2 CYS B 28 CYS B 33 1555 1555 2.13 SSBOND 3 CYS B 200 CYS B 255 1555 1555 2.02 LINK OD1 ASP A 110 MG MG A 302 1555 1555 2.10 LINK OE2 GLU A 213 MG MG A 302 1555 1555 2.01 LINK MG MG A 302 O HOH A 431 1555 1555 2.13 LINK MG MG A 302 OD1 ASP B 110 1555 1555 2.08 LINK MG MG A 302 OE2 GLU B 213 1555 1555 2.01 LINK MG MG A 302 O HOH B 421 1555 1555 2.14 CISPEP 1 GLN A 18 PRO A 19 0 9.30 CISPEP 2 SER A 250 GLY A 251 0 0.89 CISPEP 3 GLN B 18 PRO B 19 0 9.60 SITE 1 AC1 9 PHE A 63 ASP A 91 LEU A 92 SER A 93 SITE 2 AC1 9 ARG A 98 LYS A 144 HIS A 145 GLU A 188 SITE 3 AC1 9 HOH A 413 SITE 1 AC2 6 ASP A 110 GLU A 213 HOH A 431 ASP B 110 SITE 2 AC2 6 GLU B 213 HOH B 421 SITE 1 AC3 9 PHE B 63 ASP B 91 LEU B 92 SER B 93 SITE 2 AC3 9 ARG B 98 LYS B 144 HIS B 145 GLU B 188 SITE 3 AC3 9 HOH B 422 SITE 1 AC4 4 PHE B 203 SER B 204 HOH B 409 HOH B 529 CRYST1 45.731 123.389 54.334 90.00 112.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021867 0.000000 0.008922 0.00000 SCALE2 0.000000 0.008104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019878 0.00000