HEADER TRANSFERASE 19-JUL-15 5CO4 TITLE STRUCTURAL INSIGHTS INTO THE 2-OH METHYLATION OF C/U34 ON TRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRNA (CYTIDINE(34)-2'-O)-METHYLTRANSFERASE; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: TRML, TRNA (CYTIDINE/URIDINE-2'-O-)-METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.207; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB27; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 GENE: TT_C1952; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TRML, METHYLTRNASFERASE, S-ADENOSYL-L-METHIONINE, METHYLTHIOADENSINE, KEYWDS 2 CATALYTIC MECHANISM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.XIE,P.PANG,Z.WANG REVDAT 2 08-NOV-23 5CO4 1 REMARK REVDAT 1 20-JUL-16 5CO4 0 JRNL AUTH W.XIE,P.PANG,Z.WANG JRNL TITL STRUCTURAL INSIGHTS INTO THE 2-OH METHYLATION OF C34 OR U34 JRNL TITL 2 ON TRNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6979 - 3.9968 1.00 2620 143 0.1544 0.1560 REMARK 3 2 3.9968 - 3.1729 1.00 2582 144 0.1515 0.1788 REMARK 3 3 3.1729 - 2.7720 1.00 2563 148 0.1757 0.1921 REMARK 3 4 2.7720 - 2.5186 1.00 2555 140 0.1927 0.2478 REMARK 3 5 2.5186 - 2.3381 1.00 2577 131 0.1792 0.2166 REMARK 3 6 2.3381 - 2.2003 1.00 2569 122 0.1819 0.2038 REMARK 3 7 2.2003 - 2.0901 1.00 2573 134 0.1791 0.2236 REMARK 3 8 2.0901 - 1.9991 1.00 2537 132 0.1772 0.2069 REMARK 3 9 1.9991 - 1.9221 1.00 2552 119 0.1882 0.2461 REMARK 3 10 1.9221 - 1.8558 1.00 2542 148 0.2001 0.2401 REMARK 3 11 1.8558 - 1.7978 1.00 2550 142 0.2000 0.2584 REMARK 3 12 1.7978 - 1.7464 1.00 2552 129 0.2049 0.2457 REMARK 3 13 1.7464 - 1.7004 1.00 2558 124 0.2093 0.2465 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2555 REMARK 3 ANGLE : 1.125 3486 REMARK 3 CHIRALITY : 0.044 376 REMARK 3 PLANARITY : 0.007 449 REMARK 3 DIHEDRAL : 12.108 908 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35125 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 38.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4JAK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 3350, 0.6 M NACL, 0.1 M MES REMARK 280 (PH 6.5), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.06600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.53300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.06600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.53300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 650 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 334 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 424 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE B -28 REMARK 465 CYS B -27 REMARK 465 LEU B -26 REMARK 465 THR B -25 REMARK 465 LEU B -24 REMARK 465 ARG B -23 REMARK 465 ARG B -22 REMARK 465 ARG B -21 REMARK 465 TYR B -20 REMARK 465 THR B -19 REMARK 465 MET B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 ARG B 149 REMARK 465 PHE A -28 REMARK 465 CYS A -27 REMARK 465 LEU A -26 REMARK 465 THR A -25 REMARK 465 LEU A -24 REMARK 465 ARG A -23 REMARK 465 ARG A -22 REMARK 465 ARG A -21 REMARK 465 TYR A -20 REMARK 465 THR A -19 REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 LEU A -8 REMARK 465 GLU A -7 REMARK 465 VAL A -6 REMARK 465 LEU A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B -12 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 46 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 470 ARG B 91 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 46 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 127 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 42 O HOH B 501 1.85 REMARK 500 O HOH B 519 O HOH B 522 2.04 REMARK 500 O GLY A 124 O HOH A 301 2.04 REMARK 500 NH2 ARG B 105 O HOH B 502 2.07 REMARK 500 O HOH A 303 O HOH A 306 2.07 REMARK 500 O HOH B 502 O HOH B 557 2.08 REMARK 500 O MET A 122 O HOH A 301 2.08 REMARK 500 O HOH B 508 O HOH B 528 2.09 REMARK 500 NH2 ARG A 114 O HOH A 302 2.10 REMARK 500 ND2 ASN A 17 O HOH A 303 2.14 REMARK 500 O HOH B 515 O HOH B 626 2.15 REMARK 500 O HOH A 346 O HOH A 366 2.15 REMARK 500 NZ LYS A 119 O HOH A 304 2.16 REMARK 500 O HOH A 367 O HOH A 452 2.16 REMARK 500 O HOH A 307 O HOH A 317 2.16 REMARK 500 NZ LYS A 45 O HOH A 305 2.16 REMARK 500 O HOH B 515 O HOH B 538 2.17 REMARK 500 N LYS B 45 O HOH B 501 2.17 REMARK 500 O HOH B 549 O HOH B 552 2.18 REMARK 500 NH1 ARG A 20 O HOH A 306 2.18 REMARK 500 O HOH A 352 O HOH A 396 2.19 REMARK 500 O HOH B 601 O HOH B 604 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 364 O HOH A 425 4655 1.80 REMARK 500 O HOH B 508 O HOH A 392 6554 1.86 REMARK 500 O HOH A 313 O HOH A 313 4655 1.91 REMARK 500 O HOH B 594 O HOH B 623 2654 2.08 REMARK 500 O HOH B 524 O HOH B 601 3665 2.11 REMARK 500 O HOH B 634 O HOH A 434 3664 2.15 REMARK 500 O HOH B 624 O HOH A 408 3664 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 94 131.48 -37.25 REMARK 500 LEU A 49 -130.85 48.45 REMARK 500 ARG A 105 -4.41 -154.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 462 DISTANCE = 6.11 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MTA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MTA A 202 DBREF 5CO4 B 1 149 UNP Q72G96 Q72G96_THET2 1 149 DBREF 5CO4 A 1 149 UNP Q72G96 Q72G96_THET2 1 149 SEQADV 5CO4 PHE B -28 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 CYS B -27 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 LEU B -26 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 THR B -25 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 LEU B -24 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 ARG B -23 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 ARG B -22 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 ARG B -21 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 TYR B -20 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 THR B -19 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 MET B -18 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 GLY B -17 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 SER B -16 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 SER B -15 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 HIS B -14 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 HIS B -13 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 HIS B -12 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 HIS B -11 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 HIS B -10 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 HIS B -9 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 LEU B -8 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 GLU B -7 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 VAL B -6 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 LEU B -5 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 PHE B -4 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 GLN B -3 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 GLY B -2 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 PRO B -1 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 HIS B 0 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 PHE A -28 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 CYS A -27 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 LEU A -26 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 THR A -25 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 LEU A -24 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 ARG A -23 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 ARG A -22 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 ARG A -21 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 TYR A -20 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 THR A -19 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 MET A -18 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 GLY A -17 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 SER A -16 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 SER A -15 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 HIS A -14 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 HIS A -13 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 HIS A -12 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 HIS A -11 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 HIS A -10 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 HIS A -9 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 LEU A -8 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 GLU A -7 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 VAL A -6 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 LEU A -5 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 PHE A -4 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 GLN A -3 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 GLY A -2 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 PRO A -1 UNP Q72G96 EXPRESSION TAG SEQADV 5CO4 HIS A 0 UNP Q72G96 EXPRESSION TAG SEQRES 1 B 178 PHE CYS LEU THR LEU ARG ARG ARG TYR THR MET GLY SER SEQRES 2 B 178 SER HIS HIS HIS HIS HIS HIS LEU GLU VAL LEU PHE GLN SEQRES 3 B 178 GLY PRO HIS MET LEU HIS LEU VAL LEU TYR GLN PRO GLU SEQRES 4 B 178 ILE PRO GLN ASN ALA GLY ASN VAL ALA ARG THR ALA ALA SEQRES 5 B 178 ALA LEU GLY TRP PRO LEU HIS LEU ILE ARG PRO LEU GLY SEQRES 6 B 178 PHE LEU LEU SER SER PRO LYS LEU LYS ARG ALA GLY LEU SEQRES 7 B 178 ASP TYR TRP PRO HIS VAL ASP LEU ARG LEU HIS ASP SER SEQRES 8 B 178 PHE ALA ALA PHE LEU GLU ALA LEU PRO ARG GLY ALA ARG SEQRES 9 B 178 VAL PHE ALA PHE SER ALA ARG GLY GLU ALA SER LEU TYR SEQRES 10 B 178 GLU ALA ARG PHE ARG GLU GLY ASP TYR LEU LEU PHE GLY SEQRES 11 B 178 PRO GLU SER ARG GLY LEU PRO GLU GLU VAL LEU ALA ARG SEQRES 12 B 178 PHE PRO THR LEU LYS ILE PRO MET PRO GLY PRO VAL ARG SEQRES 13 B 178 SER LEU ASN LEU ALA VAL ALA VAL GLY VAL ALA ALA TYR SEQRES 14 B 178 GLU ALA TYR ARG GLN LEU THR GLY ARG SEQRES 1 A 178 PHE CYS LEU THR LEU ARG ARG ARG TYR THR MET GLY SER SEQRES 2 A 178 SER HIS HIS HIS HIS HIS HIS LEU GLU VAL LEU PHE GLN SEQRES 3 A 178 GLY PRO HIS MET LEU HIS LEU VAL LEU TYR GLN PRO GLU SEQRES 4 A 178 ILE PRO GLN ASN ALA GLY ASN VAL ALA ARG THR ALA ALA SEQRES 5 A 178 ALA LEU GLY TRP PRO LEU HIS LEU ILE ARG PRO LEU GLY SEQRES 6 A 178 PHE LEU LEU SER SER PRO LYS LEU LYS ARG ALA GLY LEU SEQRES 7 A 178 ASP TYR TRP PRO HIS VAL ASP LEU ARG LEU HIS ASP SER SEQRES 8 A 178 PHE ALA ALA PHE LEU GLU ALA LEU PRO ARG GLY ALA ARG SEQRES 9 A 178 VAL PHE ALA PHE SER ALA ARG GLY GLU ALA SER LEU TYR SEQRES 10 A 178 GLU ALA ARG PHE ARG GLU GLY ASP TYR LEU LEU PHE GLY SEQRES 11 A 178 PRO GLU SER ARG GLY LEU PRO GLU GLU VAL LEU ALA ARG SEQRES 12 A 178 PHE PRO THR LEU LYS ILE PRO MET PRO GLY PRO VAL ARG SEQRES 13 A 178 SER LEU ASN LEU ALA VAL ALA VAL GLY VAL ALA ALA TYR SEQRES 14 A 178 GLU ALA TYR ARG GLN LEU THR GLY ARG HET MTA B 401 20 HET GOL A 201 6 HET MTA A 202 20 HETNAM MTA 5'-DEOXY-5'-METHYLTHIOADENOSINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MTA 2(C11 H15 N5 O3 S) FORMUL 4 GOL C3 H8 O3 FORMUL 6 HOH *314(H2 O) HELIX 1 AA1 HIS B -10 PHE B -4 1 7 HELIX 2 AA2 ILE B 11 GLY B 26 1 16 HELIX 3 AA3 SER B 41 LYS B 45 5 5 HELIX 4 AA4 TYR B 51 VAL B 55 5 5 HELIX 5 AA5 SER B 62 LEU B 70 1 9 HELIX 6 AA6 TYR B 88 ALA B 90 5 3 HELIX 7 AA7 PRO B 108 PHE B 115 1 8 HELIX 8 AA8 ASN B 130 GLY B 148 1 19 HELIX 9 AA9 ILE A 11 GLY A 26 1 16 HELIX 10 AB1 SER A 41 GLY A 48 1 8 HELIX 11 AB2 TYR A 51 VAL A 55 5 5 HELIX 12 AB3 SER A 62 ALA A 69 1 8 HELIX 13 AB4 TYR A 88 ALA A 90 5 3 HELIX 14 AB5 PRO A 108 PHE A 115 1 8 HELIX 15 AB6 ASN A 130 THR A 147 1 18 SHEET 1 AA1 7 LEU B 57 HIS B 60 0 SHEET 2 AA1 7 LEU B 29 ILE B 32 1 N LEU B 29 O ARG B 58 SHEET 3 AA1 7 HIS B 3 TYR B 7 1 N LEU B 4 O HIS B 30 SHEET 4 AA1 7 TYR B 97 PHE B 100 1 O LEU B 98 N HIS B 3 SHEET 5 AA1 7 VAL B 76 PHE B 79 1 N PHE B 77 O TYR B 97 SHEET 6 AA1 7 THR B 117 LYS B 119 1 O LEU B 118 N ALA B 78 SHEET 7 AA1 7 ALA B 85 SER B 86 1 N ALA B 85 O LYS B 119 SHEET 1 AA2 7 LEU A 57 HIS A 60 0 SHEET 2 AA2 7 LEU A 29 ILE A 32 1 N LEU A 29 O ARG A 58 SHEET 3 AA2 7 HIS A 3 TYR A 7 1 N LEU A 4 O HIS A 30 SHEET 4 AA2 7 TYR A 97 PHE A 100 1 O LEU A 98 N HIS A 3 SHEET 5 AA2 7 VAL A 76 PHE A 79 1 N PHE A 77 O LEU A 99 SHEET 6 AA2 7 THR A 117 LYS A 119 1 O LEU A 118 N ALA A 78 SHEET 7 AA2 7 ALA A 85 SER A 86 1 N ALA A 85 O LYS A 119 CISPEP 1 ARG B 33 PRO B 34 0 1.78 CISPEP 2 GLY A -2 PRO A -1 0 0.39 CISPEP 3 ARG A 33 PRO A 34 0 -0.45 SITE 1 AC1 14 PHE B 79 SER B 80 ALA B 81 PHE B 100 SITE 2 AC1 14 GLY B 101 PRO B 102 GLU B 103 GLY B 106 SITE 3 AC1 14 LEU B 118 ILE B 120 MET B 122 LEU B 129 SITE 4 AC1 14 ALA B 134 HOH B 567 SITE 1 AC2 8 PHE A 79 SER A 80 ALA A 81 ARG A 82 SITE 2 AC2 8 GLY A 106 LEU A 107 MTA A 202 HOH A 310 SITE 1 AC3 14 PHE A 79 SER A 80 PHE A 100 GLY A 101 SITE 2 AC3 14 PRO A 102 GLU A 103 GLY A 106 LEU A 118 SITE 3 AC3 14 ILE A 120 MET A 122 LEU A 129 LEU A 131 SITE 4 AC3 14 ALA A 134 GOL A 201 CRYST1 95.296 95.296 61.599 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010494 0.006058 0.000000 0.00000 SCALE2 0.000000 0.012117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016234 0.00000