HEADER TRANSLATION 20-JUL-15 5COL TITLE RIBOSOMAL PROTEIN L11 FROM METHANOCOCCUS JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L11; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: RPL11, MJ0373; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PUBS520; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-11C; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-11C/MJAL11 KEYWDS ARCHAEAL PROTEINS, METHANOCOCCUS, PROTEIN STRUCTURE, RNA, RIBOSOMAL KEYWDS 2 PROTEINS, RIBOSOMES, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR A.G.GABDULKHAKOV,I.V.MITROSHIN,M.B.GARBER REVDAT 2 08-MAY-24 5COL 1 REMARK REVDAT 1 17-AUG-16 5COL 0 JRNL AUTH A.G.GABDULKHAKOV JRNL TITL CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L11 FROM JRNL TITL 2 METHANOCOCCUS JANNASCHII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 19710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1038 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1454 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2320 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.45000 REMARK 3 B22 (A**2) : -5.16000 REMARK 3 B33 (A**2) : 6.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.240 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.234 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.413 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2387 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2442 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3217 ; 1.741 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5678 ; 0.832 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 307 ; 7.264 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;45.035 ;27.108 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 460 ;20.950 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;24.558 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 387 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2579 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 400 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1231 ; 4.670 ; 6.306 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1230 ; 4.661 ; 6.304 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1534 ; 6.829 ; 9.444 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1535 ; 6.828 ; 9.446 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1154 ; 5.836 ; 6.998 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1152 ; 5.837 ; 6.997 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1680 ; 8.844 ;10.215 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2702 ;11.436 ;51.055 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2703 ;11.434 ;51.066 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5COL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211956. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625, 0.97917 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22254 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.250 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, PH 5.0, 0.1 M REMARK 280 MGCL2, 27% PEG 600, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.57500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.02500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.46000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.57500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.02500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.46000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.57500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.02500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.46000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.57500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.02500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.46000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 304 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLU A 83 REMARK 465 THR A 84 REMARK 465 ALA A 85 REMARK 465 ALA A 86 REMARK 465 HIS A 87 REMARK 465 GLU A 88 REMARK 465 PRO A 89 REMARK 465 ARG A 90 REMARK 465 PHE A 157 REMARK 465 LYS A 158 REMARK 465 GLU A 159 REMARK 465 GLU A 160 REMARK 465 MET B 0 REMARK 465 GLU B 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 94 OE1 GLU B 88 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 155 OE2 GLU A 155 2555 1.86 REMARK 500 OE2 GLU B 37 OE2 GLU B 137 7454 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 46 122.39 -37.67 REMARK 500 ARG A 61 -7.41 73.03 REMARK 500 TYR A 153 -90.12 -110.01 REMARK 500 ASP A 154 19.29 44.33 REMARK 500 THR B 42 32.29 -99.49 REMARK 500 GLU B 46 124.01 -36.83 REMARK 500 MET B 113 87.96 -169.14 REMARK 500 GLU B 137 -139.11 47.39 REMARK 500 ALA B 150 14.84 -69.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 81 ILE A 82 -146.11 REMARK 500 GLY B 138 LYS B 139 -145.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT B 203 DBREF 5COL A 0 160 UNP P54030 RL11_METJA 1 161 DBREF 5COL B 0 160 UNP P54030 RL11_METJA 1 161 SEQRES 1 A 161 MET ALA LYS GLU VAL VAL GLU VAL LEU VAL THR GLY GLY SEQRES 2 A 161 ARG ALA THR ALA GLY PRO PRO LEU GLY PRO ALA ILE GLY SEQRES 3 A 161 PRO LEU GLY VAL ASN VAL MET GLN VAL VAL LYS GLU ILE SEQRES 4 A 161 ASN GLU LYS THR LYS ASP TYR GLU GLY MET GLN VAL PRO SEQRES 5 A 161 VAL LYS VAL ILE VAL ASP THR GLU THR ARG LYS PHE GLU SEQRES 6 A 161 ILE GLU VAL GLY ILE PRO PRO THR THR ALA LEU ILE LYS SEQRES 7 A 161 LYS GLU LEU GLY ILE GLU THR ALA ALA HIS GLU PRO ARG SEQRES 8 A 161 HIS GLU VAL VAL GLY ASN LEU THR LEU GLU GLN VAL ILE SEQRES 9 A 161 LYS ILE ALA LYS MET LYS LYS ASP ALA MET LEU SER TYR SEQRES 10 A 161 THR LEU LYS ASN ALA VAL LYS GLU VAL LEU GLY THR CYS SEQRES 11 A 161 GLY SER MET GLY VAL THR VAL GLU GLY LYS ASP PRO LYS SEQRES 12 A 161 GLU VAL GLN LYS GLU ILE ASP ALA GLY VAL TYR ASP GLU SEQRES 13 A 161 TYR PHE LYS GLU GLU SEQRES 1 B 161 MET ALA LYS GLU VAL VAL GLU VAL LEU VAL THR GLY GLY SEQRES 2 B 161 ARG ALA THR ALA GLY PRO PRO LEU GLY PRO ALA ILE GLY SEQRES 3 B 161 PRO LEU GLY VAL ASN VAL MET GLN VAL VAL LYS GLU ILE SEQRES 4 B 161 ASN GLU LYS THR LYS ASP TYR GLU GLY MET GLN VAL PRO SEQRES 5 B 161 VAL LYS VAL ILE VAL ASP THR GLU THR ARG LYS PHE GLU SEQRES 6 B 161 ILE GLU VAL GLY ILE PRO PRO THR THR ALA LEU ILE LYS SEQRES 7 B 161 LYS GLU LEU GLY ILE GLU THR ALA ALA HIS GLU PRO ARG SEQRES 8 B 161 HIS GLU VAL VAL GLY ASN LEU THR LEU GLU GLN VAL ILE SEQRES 9 B 161 LYS ILE ALA LYS MET LYS LYS ASP ALA MET LEU SER TYR SEQRES 10 B 161 THR LEU LYS ASN ALA VAL LYS GLU VAL LEU GLY THR CYS SEQRES 11 B 161 GLY SER MET GLY VAL THR VAL GLU GLY LYS ASP PRO LYS SEQRES 12 B 161 GLU VAL GLN LYS GLU ILE ASP ALA GLY VAL TYR ASP GLU SEQRES 13 B 161 TYR PHE LYS GLU GLU HET CL A 201 1 HET PGE B 201 10 HET PEG B 202 7 HET CIT B 203 13 HETNAM CL CHLORIDE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CIT CITRIC ACID FORMUL 3 CL CL 1- FORMUL 4 PGE C6 H14 O4 FORMUL 5 PEG C4 H10 O3 FORMUL 6 CIT C6 H8 O7 FORMUL 7 HOH *28(H2 O) HELIX 1 AA1 PRO A 19 GLY A 25 1 7 HELIX 2 AA2 ASN A 30 THR A 42 1 13 HELIX 3 AA3 LYS A 43 GLU A 46 5 4 HELIX 4 AA4 PRO A 71 GLY A 81 1 11 HELIX 5 AA5 THR A 98 MET A 113 1 16 HELIX 6 AA6 THR A 117 MET A 132 1 16 HELIX 7 AA7 ASP A 140 GLY A 151 1 12 HELIX 8 AA8 PRO B 19 GLY B 25 1 7 HELIX 9 AA9 PRO B 26 GLY B 28 5 3 HELIX 10 AB1 ASN B 30 THR B 42 1 13 HELIX 11 AB2 LYS B 43 GLU B 46 5 4 HELIX 12 AB3 PRO B 71 LEU B 80 1 10 HELIX 13 AB4 THR B 98 ALA B 112 1 15 HELIX 14 AB5 THR B 117 MET B 132 1 16 HELIX 15 AB6 ASP B 140 ALA B 150 1 11 HELIX 16 AB7 TYR B 153 PHE B 157 5 5 SHEET 1 AA1 3 LYS A 2 THR A 10 0 SHEET 2 AA1 3 GLN A 49 ASP A 57 -1 O VAL A 52 N VAL A 7 SHEET 3 AA1 3 PHE A 63 VAL A 67 -1 O GLU A 64 N ILE A 55 SHEET 1 AA2 2 GLY A 95 LEU A 97 0 SHEET 2 AA2 2 VAL A 134 VAL A 136 1 O THR A 135 N GLY A 95 SHEET 1 AA3 3 LYS B 2 THR B 10 0 SHEET 2 AA3 3 GLN B 49 ASP B 57 -1 O VAL B 50 N VAL B 9 SHEET 3 AA3 3 PHE B 63 VAL B 67 -1 O GLU B 64 N ILE B 55 SHEET 1 AA4 2 ASN B 96 LEU B 97 0 SHEET 2 AA4 2 THR B 135 VAL B 136 1 O THR B 135 N LEU B 97 CISPEP 1 PRO A 18 PRO A 19 0 13.79 CISPEP 2 PRO B 18 PRO B 19 0 3.81 SITE 1 AC1 1 LEU A 114 SITE 1 AC2 4 GLU B 6 PRO B 51 VAL B 67 GLY B 68 SITE 1 AC3 2 TYR B 153 TYR B 156 SITE 1 AC4 5 LYS B 2 VAL B 4 GLU B 6 LYS B 53 SITE 2 AC4 5 ILE B 55 CRYST1 69.150 88.050 142.920 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014461 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011357 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006997 0.00000