HEADER UNKNOWN FUNCTION 20-JUL-15 5COM TITLE CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN Q187F5 FROM CLOSTRIDIUM TITLE 2 DIFFICILE 630 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CONJUGATIVE TRANSPOSON PROTEIN TN1549-LIKE, CTN5- COMPND 3 ORF2; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEPTOCLOSTRIDIUM DIFFICILE 630; SOURCE 3 ORGANISM_TAXID: 272563; SOURCE 4 GENE: CD630_18460; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS DUF1706, DFSB, REPLICATION, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.D.TAYLOR,G.TAYLOR,S.J.MATTHEWS REVDAT 2 02-MAR-16 5COM 1 JRNL REVDAT 1 03-FEB-16 5COM 0 JRNL AUTH J.D.TAYLOR,G.TAYLOR,S.A.HARE,S.J.MATTHEWS JRNL TITL STRUCTURES OF THE DFSB PROTEIN FAMILY SUGGEST A CATIONIC, JRNL TITL 2 HELICAL SIBLING LETHAL FACTOR PEPTIDE. JRNL REF J.MOL.BIOL. V. 428 554 2016 JRNL REFN ESSN 1089-8638 JRNL PMID 26804569 JRNL DOI 10.1016/J.JMB.2016.01.013 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 80903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 3891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.7755 - 5.6168 0.99 2879 147 0.1915 0.2075 REMARK 3 2 5.6168 - 4.4586 1.00 2891 146 0.1571 0.1849 REMARK 3 3 4.4586 - 3.8951 1.00 2866 150 0.1412 0.1728 REMARK 3 4 3.8951 - 3.5390 1.00 2907 146 0.1511 0.1640 REMARK 3 5 3.5390 - 3.2854 1.00 2851 150 0.1632 0.1889 REMARK 3 6 3.2854 - 3.0917 1.00 2890 145 0.1695 0.1530 REMARK 3 7 3.0917 - 2.9368 1.00 2876 145 0.1729 0.1885 REMARK 3 8 2.9368 - 2.8090 1.00 2891 147 0.1615 0.1874 REMARK 3 9 2.8090 - 2.7009 1.00 2876 146 0.1625 0.1891 REMARK 3 10 2.7009 - 2.6077 1.00 2884 144 0.1593 0.1980 REMARK 3 11 2.6077 - 2.5261 1.00 2850 141 0.1682 0.2015 REMARK 3 12 2.5261 - 2.4539 1.00 2953 150 0.1664 0.1852 REMARK 3 13 2.4539 - 2.3893 1.00 2839 146 0.1643 0.1938 REMARK 3 14 2.3893 - 2.3310 1.00 2908 145 0.1646 0.2042 REMARK 3 15 2.3310 - 2.2780 1.00 2818 141 0.1623 0.1897 REMARK 3 16 2.2780 - 2.2295 1.00 2948 150 0.1695 0.2170 REMARK 3 17 2.2295 - 2.1849 1.00 2846 139 0.1676 0.1729 REMARK 3 18 2.1849 - 2.1437 1.00 2909 148 0.1667 0.1980 REMARK 3 19 2.1437 - 2.1054 1.00 2868 142 0.1791 0.1557 REMARK 3 20 2.1054 - 2.0697 0.99 2859 147 0.1876 0.2609 REMARK 3 21 2.0697 - 2.0363 1.00 2917 145 0.1897 0.2186 REMARK 3 22 2.0363 - 2.0050 0.98 2761 140 0.2024 0.2206 REMARK 3 23 2.0050 - 1.9755 0.93 2742 138 0.2123 0.2674 REMARK 3 24 1.9755 - 1.9477 0.87 2508 127 0.2277 0.2596 REMARK 3 25 1.9477 - 1.9214 0.78 2245 110 0.2434 0.3450 REMARK 3 26 1.9214 - 1.8964 0.77 2220 114 0.2520 0.2603 REMARK 3 27 1.8964 - 1.8727 0.69 2025 102 0.2559 0.2693 REMARK 3 28 1.8727 - 1.8501 0.68 1985 100 0.2684 0.3052 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3035 REMARK 3 ANGLE : 1.078 4117 REMARK 3 CHIRALITY : 0.051 439 REMARK 3 PLANARITY : 0.005 521 REMARK 3 DIHEDRAL : 12.910 1151 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7310 8.6772 46.9244 REMARK 3 T TENSOR REMARK 3 T11: 0.1615 T22: 0.1901 REMARK 3 T33: 0.2094 T12: 0.0032 REMARK 3 T13: -0.0246 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 0.4858 L22: 2.1317 REMARK 3 L33: 0.2440 L12: -0.3919 REMARK 3 L13: -0.1447 L23: -0.0736 REMARK 3 S TENSOR REMARK 3 S11: -0.1554 S12: -0.2822 S13: 0.1467 REMARK 3 S21: 0.6366 S22: 0.1606 S23: -0.1100 REMARK 3 S31: -0.0711 S32: 0.0568 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5401 -15.4367 45.7729 REMARK 3 T TENSOR REMARK 3 T11: 0.1517 T22: 0.1450 REMARK 3 T33: 0.2080 T12: 0.0015 REMARK 3 T13: -0.0119 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.1072 L22: 0.2042 REMARK 3 L33: 0.2363 L12: -0.0799 REMARK 3 L13: 0.1678 L23: -0.1222 REMARK 3 S TENSOR REMARK 3 S11: 0.0760 S12: 0.0324 S13: 0.0461 REMARK 3 S21: -0.0028 S22: -0.0612 S23: -0.0274 REMARK 3 S31: 0.2151 S32: 0.1275 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8548 1.2083 33.6196 REMARK 3 T TENSOR REMARK 3 T11: 0.1278 T22: 0.1289 REMARK 3 T33: 0.1342 T12: -0.0124 REMARK 3 T13: 0.0141 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.0996 L22: 0.2275 REMARK 3 L33: 0.0771 L12: 0.0811 REMARK 3 L13: 0.0787 L23: 0.0295 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: 0.0273 S13: -0.0363 REMARK 3 S21: -0.2839 S22: 0.0459 S23: -0.0481 REMARK 3 S31: 0.0818 S32: 0.0595 S33: 0.0079 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4972 4.5560 24.5443 REMARK 3 T TENSOR REMARK 3 T11: 0.3751 T22: 0.2769 REMARK 3 T33: 0.3156 T12: -0.0253 REMARK 3 T13: -0.0481 T23: 0.0446 REMARK 3 L TENSOR REMARK 3 L11: 0.2327 L22: 0.0049 REMARK 3 L33: 0.0300 L12: 0.0175 REMARK 3 L13: 0.0443 L23: -0.0063 REMARK 3 S TENSOR REMARK 3 S11: -0.2457 S12: 0.6651 S13: 0.3448 REMARK 3 S21: -0.4517 S22: 0.0490 S23: -0.0392 REMARK 3 S31: -0.0840 S32: 0.1144 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2233 -8.1259 32.7238 REMARK 3 T TENSOR REMARK 3 T11: 0.1451 T22: 0.1418 REMARK 3 T33: 0.1706 T12: -0.0231 REMARK 3 T13: -0.0020 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.0478 L22: 0.1021 REMARK 3 L33: 0.4817 L12: -0.0599 REMARK 3 L13: 0.0367 L23: -0.1350 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: 0.1285 S13: -0.1510 REMARK 3 S21: -0.0482 S22: -0.0027 S23: 0.0390 REMARK 3 S31: 0.0850 S32: -0.0099 S33: 0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9614 3.8814 35.8112 REMARK 3 T TENSOR REMARK 3 T11: 0.1288 T22: 0.1738 REMARK 3 T33: 0.1986 T12: -0.0494 REMARK 3 T13: 0.0310 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 0.4616 L22: 1.4853 REMARK 3 L33: 0.4280 L12: -0.2392 REMARK 3 L13: 0.1742 L23: -0.3157 REMARK 3 S TENSOR REMARK 3 S11: 0.1123 S12: 0.1531 S13: 0.1435 REMARK 3 S21: -0.2302 S22: -0.1202 S23: -0.1259 REMARK 3 S31: 0.0380 S32: 0.0122 S33: 0.0031 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1798 14.4802 35.5667 REMARK 3 T TENSOR REMARK 3 T11: 0.1759 T22: 0.1518 REMARK 3 T33: 0.2895 T12: 0.0057 REMARK 3 T13: -0.0013 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.1256 L22: 1.7363 REMARK 3 L33: 1.0246 L12: 1.4819 REMARK 3 L13: 0.8305 L23: 1.2868 REMARK 3 S TENSOR REMARK 3 S11: -0.2875 S12: 0.0226 S13: 0.3001 REMARK 3 S21: -0.4959 S22: 0.0602 S23: 0.4279 REMARK 3 S31: -0.2329 S32: -0.0307 S33: -0.1340 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7576 -2.2300 48.0922 REMARK 3 T TENSOR REMARK 3 T11: 0.1499 T22: 0.1739 REMARK 3 T33: 0.1325 T12: 0.0022 REMARK 3 T13: -0.0145 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.3333 L22: 0.6483 REMARK 3 L33: 0.2347 L12: 0.0990 REMARK 3 L13: -0.2579 L23: -0.2129 REMARK 3 S TENSOR REMARK 3 S11: -0.1023 S12: -0.1904 S13: -0.0794 REMARK 3 S21: 0.3375 S22: 0.1599 S23: 0.2148 REMARK 3 S31: -0.0364 S32: -0.1412 S33: -0.0049 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0631 14.7770 17.3998 REMARK 3 T TENSOR REMARK 3 T11: 0.2501 T22: 0.2123 REMARK 3 T33: 0.1507 T12: 0.0318 REMARK 3 T13: -0.0042 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.2400 L22: 0.5115 REMARK 3 L33: 0.3440 L12: 0.0007 REMARK 3 L13: 0.1659 L23: -0.0927 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: 0.0374 S13: -0.0448 REMARK 3 S21: -0.0176 S22: 0.1416 S23: -0.3737 REMARK 3 S31: 0.2791 S32: 0.4583 S33: 0.0132 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4245 38.5514 20.0017 REMARK 3 T TENSOR REMARK 3 T11: 0.1768 T22: 0.1889 REMARK 3 T33: 0.1803 T12: -0.0403 REMARK 3 T13: -0.0131 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.4173 L22: 0.4062 REMARK 3 L33: 0.1803 L12: -0.0286 REMARK 3 L13: 0.1018 L23: 0.2396 REMARK 3 S TENSOR REMARK 3 S11: -0.0372 S12: 0.1426 S13: 0.2821 REMARK 3 S21: -0.1699 S22: 0.1165 S23: -0.0882 REMARK 3 S31: -0.0722 S32: 0.0257 S33: -0.0153 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0643 25.7042 10.3727 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.2073 REMARK 3 T33: 0.1314 T12: -0.0018 REMARK 3 T13: -0.0180 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.4613 L22: 0.8929 REMARK 3 L33: 1.0669 L12: -0.0719 REMARK 3 L13: -0.6426 L23: 0.1118 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: 0.0421 S13: 0.1814 REMARK 3 S21: -0.1575 S22: -0.0912 S23: 0.1980 REMARK 3 S31: 0.0024 S32: -0.2969 S33: -0.0157 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1267 18.4084 21.5399 REMARK 3 T TENSOR REMARK 3 T11: 0.2339 T22: 0.1714 REMARK 3 T33: 0.1216 T12: -0.0197 REMARK 3 T13: 0.0069 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 1.3277 L22: 1.5960 REMARK 3 L33: 0.6138 L12: 0.7715 REMARK 3 L13: 0.0155 L23: -0.0531 REMARK 3 S TENSOR REMARK 3 S11: -0.0456 S12: 0.0597 S13: 0.0073 REMARK 3 S21: -0.1968 S22: -0.0574 S23: 0.3331 REMARK 3 S31: 0.2393 S32: -0.1029 S33: -0.2624 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4363 9.3582 2.1614 REMARK 3 T TENSOR REMARK 3 T11: 0.3527 T22: 0.2734 REMARK 3 T33: 0.1989 T12: -0.0376 REMARK 3 T13: -0.0170 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 0.3619 L22: 0.2128 REMARK 3 L33: 0.1132 L12: -0.2423 REMARK 3 L13: -0.0372 L23: 0.1169 REMARK 3 S TENSOR REMARK 3 S11: 0.0844 S12: 0.2298 S13: -0.0982 REMARK 3 S21: -0.2983 S22: 0.0088 S23: 0.2645 REMARK 3 S31: 0.2587 S32: -0.2364 S33: 0.0010 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6136 25.6529 13.9975 REMARK 3 T TENSOR REMARK 3 T11: 0.1380 T22: 0.2086 REMARK 3 T33: 0.1580 T12: -0.0221 REMARK 3 T13: 0.0110 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.2393 L22: 0.1792 REMARK 3 L33: 0.4699 L12: 0.1884 REMARK 3 L13: -0.1006 L23: -0.0674 REMARK 3 S TENSOR REMARK 3 S11: 0.0468 S12: 0.1688 S13: -0.0479 REMARK 3 S21: -0.0255 S22: 0.1211 S23: -0.2964 REMARK 3 S31: 0.1443 S32: 0.2722 S33: 0.0147 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5COM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80903 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 61.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX 1.9_1692 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM FORMATE, 0.1 M AMMONIUM REMARK 280 ACETATE, 0.1 M SODIUM CITRATE TRIBASIC DIHYDRATE, 0.1 M SODIUM REMARK 280 POTASSIUM TARTRATE TETRAHYDRATE, 0.1 M SODIUM OXAMATE 0.1 M TRIS, REMARK 280 0.1 M BICINE, PH 8.5, 12% PEG 550 MME, 6% PEG 20,000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.52500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.52500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 535 O HOH A 560 1.97 REMARK 500 O HOH B 468 O HOH B 525 1.97 REMARK 500 O HOH B 478 O HOH B 488 1.98 REMARK 500 O HOH B 462 O HOH B 471 2.01 REMARK 500 O HOH B 486 O HOH B 518 2.01 REMARK 500 O HOH B 478 O HOH B 527 2.02 REMARK 500 OD1 ASP A 147 O HOH A 301 2.03 REMARK 500 O HOH B 397 O HOH B 483 2.08 REMARK 500 O HOH A 566 O HOH A 568 2.10 REMARK 500 O HOH A 425 O HOH A 475 2.10 REMARK 500 O HOH A 398 O HOH A 512 2.13 REMARK 500 O HOH A 494 O HOH A 500 2.13 REMARK 500 OE2 GLU B 30 O HOH B 301 2.15 REMARK 500 O HOH B 477 O HOH B 487 2.16 REMARK 500 O HOH A 421 O HOH A 551 2.16 REMARK 500 O HOH A 476 O HOH A 527 2.16 REMARK 500 OD1 ASP B 147 O HOH B 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 442 O HOH B 399 2646 1.94 REMARK 500 O TYR A 15 ND2 ASN A 92 4556 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 164 -81.47 -131.41 REMARK 500 THR B 164 -83.80 -133.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 566 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 567 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 568 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B 530 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 531 DISTANCE = 7.20 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 146 O REMARK 620 2 THR B 149 O 87.3 REMARK 620 3 THR B 149 OG1 85.0 71.6 REMARK 620 4 HOH B 441 O 88.7 152.6 81.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TAR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 201 DBREF 5COM A 13 183 UNP Q187F5 Q187F5_PEPD6 2 172 DBREF 5COM B 13 183 UNP Q187F5 Q187F5_PEPD6 2 172 SEQADV 5COM MSE A 1 UNP Q187F5 INITIATING METHIONINE SEQADV 5COM ARG A 2 UNP Q187F5 EXPRESSION TAG SEQADV 5COM GLY A 3 UNP Q187F5 EXPRESSION TAG SEQADV 5COM SER A 4 UNP Q187F5 EXPRESSION TAG SEQADV 5COM HIS A 5 UNP Q187F5 EXPRESSION TAG SEQADV 5COM HIS A 6 UNP Q187F5 EXPRESSION TAG SEQADV 5COM HIS A 7 UNP Q187F5 EXPRESSION TAG SEQADV 5COM HIS A 8 UNP Q187F5 EXPRESSION TAG SEQADV 5COM HIS A 9 UNP Q187F5 EXPRESSION TAG SEQADV 5COM HIS A 10 UNP Q187F5 EXPRESSION TAG SEQADV 5COM GLY A 11 UNP Q187F5 EXPRESSION TAG SEQADV 5COM SER A 12 UNP Q187F5 EXPRESSION TAG SEQADV 5COM MSE B 1 UNP Q187F5 INITIATING METHIONINE SEQADV 5COM ARG B 2 UNP Q187F5 EXPRESSION TAG SEQADV 5COM GLY B 3 UNP Q187F5 EXPRESSION TAG SEQADV 5COM SER B 4 UNP Q187F5 EXPRESSION TAG SEQADV 5COM HIS B 5 UNP Q187F5 EXPRESSION TAG SEQADV 5COM HIS B 6 UNP Q187F5 EXPRESSION TAG SEQADV 5COM HIS B 7 UNP Q187F5 EXPRESSION TAG SEQADV 5COM HIS B 8 UNP Q187F5 EXPRESSION TAG SEQADV 5COM HIS B 9 UNP Q187F5 EXPRESSION TAG SEQADV 5COM HIS B 10 UNP Q187F5 EXPRESSION TAG SEQADV 5COM GLY B 11 UNP Q187F5 EXPRESSION TAG SEQADV 5COM SER B 12 UNP Q187F5 EXPRESSION TAG SEQRES 1 A 183 MSE ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ARG SEQRES 2 A 183 VAL TYR GLU ASN LYS GLU GLU LEU LYS SER GLU ILE ASN SEQRES 3 A 183 LYS THR PHE GLU LYS TYR ILE ALA GLU PHE ASP ASN ILE SEQRES 4 A 183 PRO GLU SER LEU LYS ASP LYS ARG ILE ASP GLU VAL ASP SEQRES 5 A 183 ARG THR PRO ALA GLU ASN LEU ALA TYR GLN VAL GLY TRP SEQRES 6 A 183 THR THR LEU VAL LEU LYS TRP GLU GLU ASP GLU ARG ASN SEQRES 7 A 183 GLY LEU GLN VAL LYS THR PRO SER ASP GLU PHE LYS TRP SEQRES 8 A 183 ASN GLN LEU GLY GLU LEU TYR GLN TRP PHE THR ASP THR SEQRES 9 A 183 TYR ALA TYR LEU SER LEU GLN GLU LEU LYS SER LYS LEU SEQRES 10 A 183 ASN GLU ASN ILE ASN SER ILE TYR VAL MSE ILE ASP SER SEQRES 11 A 183 LEU SER ASP GLU GLU LEU PHE LYS PRO HIS MSE ARG LYS SEQRES 12 A 183 TRP ALA ASP ASP ALA THR LYS THR ALA VAL TRP GLU VAL SEQRES 13 A 183 TYR LYS PHE ILE HIS VAL ASN THR VAL ALA PRO PHE LYS SEQRES 14 A 183 THR PHE ARG ASN LYS ILE ARG LYS TRP LYS LYS ILE VAL SEQRES 15 A 183 LEU SEQRES 1 B 183 MSE ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ARG SEQRES 2 B 183 VAL TYR GLU ASN LYS GLU GLU LEU LYS SER GLU ILE ASN SEQRES 3 B 183 LYS THR PHE GLU LYS TYR ILE ALA GLU PHE ASP ASN ILE SEQRES 4 B 183 PRO GLU SER LEU LYS ASP LYS ARG ILE ASP GLU VAL ASP SEQRES 5 B 183 ARG THR PRO ALA GLU ASN LEU ALA TYR GLN VAL GLY TRP SEQRES 6 B 183 THR THR LEU VAL LEU LYS TRP GLU GLU ASP GLU ARG ASN SEQRES 7 B 183 GLY LEU GLN VAL LYS THR PRO SER ASP GLU PHE LYS TRP SEQRES 8 B 183 ASN GLN LEU GLY GLU LEU TYR GLN TRP PHE THR ASP THR SEQRES 9 B 183 TYR ALA TYR LEU SER LEU GLN GLU LEU LYS SER LYS LEU SEQRES 10 B 183 ASN GLU ASN ILE ASN SER ILE TYR VAL MSE ILE ASP SER SEQRES 11 B 183 LEU SER ASP GLU GLU LEU PHE LYS PRO HIS MSE ARG LYS SEQRES 12 B 183 TRP ALA ASP ASP ALA THR LYS THR ALA VAL TRP GLU VAL SEQRES 13 B 183 TYR LYS PHE ILE HIS VAL ASN THR VAL ALA PRO PHE LYS SEQRES 14 B 183 THR PHE ARG ASN LYS ILE ARG LYS TRP LYS LYS ILE VAL SEQRES 15 B 183 LEU MODRES 5COM MSE A 127 MET MODIFIED RESIDUE MODRES 5COM MSE A 141 MET MODIFIED RESIDUE MODRES 5COM MSE B 127 MET MODIFIED RESIDUE MODRES 5COM MSE B 141 MET MODIFIED RESIDUE HET MSE A 127 8 HET MSE A 141 8 HET MSE B 127 8 HET MSE B 141 8 HET TAR A 201 14 HET NA B 201 1 HETNAM MSE SELENOMETHIONINE HETNAM TAR D(-)-TARTARIC ACID HETNAM NA SODIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 TAR C4 H6 O6 FORMUL 4 NA NA 1+ FORMUL 5 HOH *499(H2 O) HELIX 1 AA1 ASN A 17 GLU A 35 1 19 HELIX 2 AA2 PRO A 40 LYS A 44 5 5 HELIX 3 AA3 THR A 54 ASN A 78 1 25 HELIX 4 AA4 GLN A 93 ALA A 106 1 14 HELIX 5 AA5 SER A 109 LEU A 131 1 23 HELIX 6 AA6 SER A 132 LYS A 138 1 7 HELIX 7 AA7 ARG A 142 THR A 149 1 8 HELIX 8 AA8 GLU A 155 THR A 164 1 10 HELIX 9 AA9 THR A 164 LEU A 183 1 20 HELIX 10 AB1 ASN B 17 GLU B 35 1 19 HELIX 11 AB2 PRO B 40 LYS B 44 5 5 HELIX 12 AB3 THR B 54 ASN B 78 1 25 HELIX 13 AB4 GLN B 93 ALA B 106 1 14 HELIX 14 AB5 SER B 109 LEU B 131 1 23 HELIX 15 AB6 SER B 132 LYS B 138 1 7 HELIX 16 AB7 ARG B 142 ALA B 148 1 7 HELIX 17 AB8 GLU B 155 ASN B 163 1 9 HELIX 18 AB9 THR B 164 LEU B 183 1 20 LINK C VAL A 126 N MSE A 127 1555 1555 1.33 LINK C MSE A 127 N ILE A 128 1555 1555 1.32 LINK C HIS A 140 N MSE A 141 1555 1555 1.33 LINK C MSE A 141 N ARG A 142 1555 1555 1.33 LINK C VAL B 126 N MSE B 127 1555 1555 1.33 LINK C MSE B 127 N ILE B 128 1555 1555 1.33 LINK C HIS B 140 N MSE B 141 1555 1555 1.32 LINK C MSE B 141 N ARG B 142 1555 1555 1.33 LINK O ASP B 146 NA NA B 201 1555 1555 2.30 LINK O THR B 149 NA NA B 201 1555 1555 2.59 LINK OG1 THR B 149 NA NA B 201 1555 1555 2.73 LINK NA NA B 201 O HOH B 441 1555 1555 2.84 CISPEP 1 THR A 84 PRO A 85 0 -3.60 CISPEP 2 THR B 84 PRO B 85 0 -2.35 SITE 1 AC1 9 TRP A 65 TRP A 91 PHE A 159 VAL A 162 SITE 2 AC1 9 ASN A 163 HOH A 305 HOH A 312 HOH A 345 SITE 3 AC1 9 HOH A 373 SITE 1 AC2 3 ASP B 146 THR B 149 HOH B 441 CRYST1 127.050 50.300 91.720 90.00 118.70 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007871 0.000000 0.004309 0.00000 SCALE2 0.000000 0.019881 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012430 0.00000