HEADER IMMUNE SYSTEM 21-JUL-15 5CP3 TITLE CRYSTAL STRUCTURE OF AN ANTIGEN-BINDING FRAGMENT OF MONOCLONAL TITLE 2 ANTIBODY AGAINST SULFONAMIDES IN COMPLEX WITH SULFATHIAZOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT CHAIN OF ANTIGEN-BINDING FRAGMENT OF MONOCLONAL COMPND 3 ANTIBODY OF 4C7; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: L CHAIN OF FAB 4C7; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEAVY CHAIN OF ANTIGEN-BINDING FRAGMENT OF MONOCLONAL COMPND 8 ANTIBODY OF 4C7; COMPND 9 CHAIN: H; COMPND 10 SYNONYM: H CHAIN OF FAB 4C7 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 STRAIN: BALB/C KEYWDS SULFATHIAZOLE, ANTI-SULFONAMIDES ANTIBODY, ANTIGEN-BINDING FRAGMENT, KEYWDS 2 COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Z.WANG,J.SHEN,C.LI,Y.LI,K.WEN,X.YU,X.ZHANG REVDAT 4 23-OCT-24 5CP3 1 REMARK REVDAT 3 08-NOV-23 5CP3 1 REMARK REVDAT 2 13-FEB-19 5CP3 1 JRNL REMARK REVDAT 1 05-AUG-15 5CP3 0 JRNL AUTH C.LI,X.LIANG,K.WEN,Y.LI,X.ZHANG,M.MA,X.YU,W.YU,J.SHEN,Z.WANG JRNL TITL CLASS-SPECIFIC MONOCLONAL ANTIBODIES AND DIHYDROPTEROATE JRNL TITL 2 SYNTHASE IN BIOASSAYS USED FOR THE DETECTION OF JRNL TITL 3 SULFONAMIDES: STRUCTURAL INSIGHTS INTO RECOGNITION JRNL TITL 4 DIVERSITY. JRNL REF ANAL. CHEM. V. 91 2392 2019 JRNL REFN ESSN 1520-6882 JRNL PMID 30580515 JRNL DOI 10.1021/ACS.ANALCHEM.8B05174 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.5 REMARK 3 NUMBER OF REFLECTIONS : 25715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1350 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 979 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 42.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3301 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.86000 REMARK 3 B22 (A**2) : 2.47000 REMARK 3 B33 (A**2) : -0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.249 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.618 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3425 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3105 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4680 ; 1.806 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7184 ; 0.890 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 432 ; 7.855 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;35.497 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;15.652 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.210 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 531 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3882 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 776 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1728 ; 2.898 ; 3.379 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1727 ; 2.887 ; 3.377 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2160 ; 3.821 ; 5.043 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5CP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000211352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979150 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32133 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 59.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.46500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1NLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM PHOSPHATE DIBASIC, 20% REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.31200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.73700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.31200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.73700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 319 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 35 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 194 NH1 ARG A 216 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU H 6 CA - CB - CG ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG H 98 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG H 98 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 VAL H 135 CB - CA - C ANGL. DEV. = -11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 56 -44.12 76.89 REMARK 500 ASP A 156 51.39 38.84 REMARK 500 ASN A 217 76.27 -67.61 REMARK 500 SER H 15 -20.69 82.73 REMARK 500 TYR H 33 165.33 67.98 REMARK 500 ASN H 44 1.04 81.95 REMARK 500 ARG H 65 -153.21 22.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG H 65 GLY H 66 148.77 REMARK 500 THR H 131 ASN H 132 -142.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 31 OD1 REMARK 620 2 THR A 97 O 93.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YTZ A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CP7 RELATED DB: PDB DBREF 5CP3 A 1 218 PDB 5CP3 5CP3 1 218 DBREF 5CP3 H 1 212 PDB 5CP3 5CP3 1 212 SEQRES 1 A 218 ASP VAL VAL MET THR GLN THR PRO ILE THR LEU SER VAL SEQRES 2 A 218 THR ILE GLY GLN PRO ALA SER ILE SER CYS LYS SER SER SEQRES 3 A 218 GLN SER LEU LEU ASP SER ASP GLY LYS THR TYR LEU ASN SEQRES 4 A 218 TRP LEU LEU GLN ARG PRO GLY GLN SER PRO LYS ARG LEU SEQRES 5 A 218 ILE TYR LEU VAL SER LYS LEU ASP SER ARG VAL PRO ASP SEQRES 6 A 218 ARG PHE THR GLY SER GLY ALA GLY THR ASP PHE THR LEU SEQRES 7 A 218 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY ILE TYR SEQRES 8 A 218 TYR CYS TRP GLN GLY THR HIS PHE PRO GLN THR PHE GLY SEQRES 9 A 218 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA GLU ALA ALA SEQRES 10 A 218 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 218 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 218 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 A 218 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER GLU THR SEQRES 14 A 218 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 218 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 218 THR TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 218 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU SEQRES 1 H 212 ASP VAL GLN LEU ARG GLU SER GLY PRO ASP LEU VAL THR SEQRES 2 H 212 PRO SER GLN SER LEU SER LEU THR CYS THR VAL THR GLY SEQRES 3 H 212 TYR SER ILE THR SER GLY TYR SER TRP HIS TRP ASN ARG SEQRES 4 H 212 GLN PHE PRO GLY ASN LYS LEU GLU TRP MET GLY TYR ILE SEQRES 5 H 212 HIS TYR SER GLY SER THR ASN TYR ASN PRO SER LEU ARG SEQRES 6 H 212 GLY ARG ILE SER ILE THR ARG ASP THR SER LYS ASN GLN SEQRES 7 H 212 PHE PHE LEU GLN LEU ASN SER VAL THR THR GLU ASP THR SEQRES 8 H 212 ALA THR TYR TYR CYS ALA ARG TYR GLY GLY TYR TRP GLY SEQRES 9 H 212 GLN GLY THR SER VAL THR VAL ALA SER ALA ALA THR THR SEQRES 10 H 212 PRO PRO SER VAL TYR PRO LEU ALA PRO GLY GLY GLY ALA SEQRES 11 H 212 THR ASN SER MET VAL THR LEU GLY CYS LEU VAL LYS GLY SEQRES 12 H 212 TYR PHE PRO GLU PRO VAL THR VAL THR TRP ASN SER GLY SEQRES 13 H 212 SER LEU SER GLY GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 14 H 212 GLN SER ASP LEU TYR THR LEU SER SER SER VAL THR VAL SEQRES 15 H 212 PRO SER SER THR TRP PRO SER GLU THR VAL THR CYS ASN SEQRES 16 H 212 VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS SEQRES 17 H 212 ILE VAL PRO ARG HET YTZ A 301 16 HET GOL A 302 6 HET CA A 303 1 HETNAM YTZ 4-AMINO-N-(1,3-THIAZOL-2-YL)BENZENESULFONAMIDE HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN YTZ SULFATHIAZOLE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 YTZ C9 H9 N3 O2 S2 FORMUL 4 GOL C3 H8 O3 FORMUL 5 CA CA 2+ FORMUL 6 HOH *85(H2 O) HELIX 1 AA1 GLU A 84 LEU A 88 5 5 HELIX 2 AA2 SER A 126 SER A 132 1 7 HELIX 3 AA3 LYS A 188 ARG A 193 1 6 HELIX 4 AA4 PRO H 62 ARG H 65 5 4 HELIX 5 AA5 THR H 87 THR H 91 5 5 HELIX 6 AA6 SER H 155 SER H 157 5 3 HELIX 7 AA7 PRO H 199 SER H 202 5 4 SHEET 1 AA1 4 MET A 4 THR A 7 0 SHEET 2 AA1 4 ALA A 19 SER A 25 -1 O SER A 22 N THR A 7 SHEET 3 AA1 4 ASP A 75 ILE A 80 -1 O ILE A 80 N ALA A 19 SHEET 4 AA1 4 PHE A 67 ALA A 72 -1 N THR A 68 O LYS A 79 SHEET 1 AA2 6 THR A 10 THR A 14 0 SHEET 2 AA2 6 THR A 107 LYS A 112 1 O LYS A 108 N LEU A 11 SHEET 3 AA2 6 GLY A 89 GLN A 95 -1 N GLY A 89 O LEU A 109 SHEET 4 AA2 6 LEU A 38 GLN A 43 -1 N LEU A 41 O TYR A 92 SHEET 5 AA2 6 PRO A 49 TYR A 54 -1 O LEU A 52 N TRP A 40 SHEET 6 AA2 6 LYS A 58 LEU A 59 -1 O LYS A 58 N TYR A 54 SHEET 1 AA3 4 THR A 10 THR A 14 0 SHEET 2 AA3 4 THR A 107 LYS A 112 1 O LYS A 108 N LEU A 11 SHEET 3 AA3 4 GLY A 89 GLN A 95 -1 N GLY A 89 O LEU A 109 SHEET 4 AA3 4 THR A 102 PHE A 103 -1 O THR A 102 N GLN A 95 SHEET 1 AA4 4 THR A 119 PHE A 123 0 SHEET 2 AA4 4 GLY A 134 PHE A 144 -1 O VAL A 138 N PHE A 123 SHEET 3 AA4 4 TYR A 178 THR A 187 -1 O LEU A 186 N ALA A 135 SHEET 4 AA4 4 VAL A 164 GLU A 168 -1 N LEU A 165 O THR A 183 SHEET 1 AA5 4 SER A 158 ARG A 160 0 SHEET 2 AA5 4 ASN A 150 ILE A 155 -1 N ILE A 155 O SER A 158 SHEET 3 AA5 4 THR A 196 THR A 202 -1 O THR A 202 N ASN A 150 SHEET 4 AA5 4 ILE A 210 ASN A 215 -1 O ILE A 210 N ALA A 201 SHEET 1 AA6 4 GLN H 3 SER H 7 0 SHEET 2 AA6 4 LEU H 18 THR H 25 -1 O THR H 25 N GLN H 3 SHEET 3 AA6 4 GLN H 78 LEU H 83 -1 O LEU H 83 N LEU H 18 SHEET 4 AA6 4 ILE H 68 ASP H 73 -1 N THR H 71 O PHE H 80 SHEET 1 AA7 6 LEU H 11 VAL H 12 0 SHEET 2 AA7 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA7 6 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 107 SHEET 4 AA7 6 SER H 34 GLN H 40 -1 N HIS H 36 O ALA H 97 SHEET 5 AA7 6 LEU H 46 HIS H 53 -1 O MET H 49 N TRP H 37 SHEET 6 AA7 6 THR H 58 TYR H 60 -1 O ASN H 59 N TYR H 51 SHEET 1 AA8 4 LEU H 11 VAL H 12 0 SHEET 2 AA8 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA8 4 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 107 SHEET 4 AA8 4 TYR H 102 TRP H 103 -1 O TYR H 102 N ARG H 98 SHEET 1 AA9 4 SER H 120 LEU H 124 0 SHEET 2 AA9 4 MET H 134 TYR H 144 -1 O LEU H 140 N TYR H 122 SHEET 3 AA9 4 LEU H 173 PRO H 183 -1 O VAL H 182 N VAL H 135 SHEET 4 AA9 4 VAL H 162 THR H 164 -1 N HIS H 163 O SER H 179 SHEET 1 AB1 4 SER H 120 LEU H 124 0 SHEET 2 AB1 4 MET H 134 TYR H 144 -1 O LEU H 140 N TYR H 122 SHEET 3 AB1 4 LEU H 173 PRO H 183 -1 O VAL H 182 N VAL H 135 SHEET 4 AB1 4 VAL H 168 GLN H 170 -1 N VAL H 168 O THR H 175 SHEET 1 AB2 3 THR H 150 TRP H 153 0 SHEET 2 AB2 3 THR H 193 HIS H 198 -1 O ASN H 195 N THR H 152 SHEET 3 AB2 3 THR H 203 LYS H 208 -1 O VAL H 205 N VAL H 196 SSBOND 1 CYS A 23 CYS A 93 1555 1555 2.13 SSBOND 2 CYS A 139 CYS A 199 1555 1555 2.05 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.11 SSBOND 4 CYS H 139 CYS H 194 1555 1555 2.02 LINK OD1 ASP A 31 CA CA A 303 1555 1555 2.29 LINK O THR A 97 CA CA A 303 1555 1555 2.47 CISPEP 1 THR A 7 PRO A 8 0 -6.16 CISPEP 2 PHE A 99 PRO A 100 0 3.17 CISPEP 3 TYR A 145 PRO A 146 0 -1.29 CISPEP 4 PHE H 145 PRO H 146 0 -14.24 CISPEP 5 GLU H 147 PRO H 148 0 -0.40 CISPEP 6 TRP H 187 PRO H 188 0 8.88 SITE 1 AC1 12 ASN A 39 LEU A 41 ARG A 51 TRP A 94 SITE 2 AC1 12 GLN A 101 HIS H 36 ASN H 38 ARG H 98 SITE 3 AC1 12 TYR H 99 GLY H 100 GLY H 101 TRP H 103 SITE 1 AC2 4 GLY A 96 HIS A 98 PHE A 99 GLN A 101 SITE 1 AC3 2 ASP A 31 THR A 97 CRYST1 126.624 69.474 62.009 90.00 115.26 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007897 0.000000 0.003726 0.00000 SCALE2 0.000000 0.014394 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017831 0.00000