HEADER TRANSFERASE 22-JUL-15 5CR5
TITLE X-RAY CRYSTAL STRUCTURE AT 1.61A RESOLUTION OF HUMAN MITOCHONDRIAL
TITLE 2 BRANCHED CHAIN AMINOTRANSFERASE (BCATM) COMPLEXED WITH A BIPHENYL
TITLE 3 PYRROLIDINE ETHER COMPOUND AND AN INTERNAL ALDIMINE LINKED PLP
TITLE 4 COFACTOR.
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE, MITOCHONDRIAL;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: UNP RESIDUES 28-392;
COMPND 5 SYNONYM: BCAT(M),PLACENTAL PROTEIN 18,PP18;
COMPND 6 EC: 2.6.1.42;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: BCAT2, BCATM, BCT2, ECA40;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28A
KEYWDS FOLD TYPE IV, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.O.SOMERS
REVDAT 2 02-SEP-15 5CR5 1 JRNL
REVDAT 1 12-AUG-15 5CR5 0
JRNL AUTH H.DENG,J.ZHOU,F.S.SUNDERSINGH,J.SUMMERFIELD,D.SOMERS,
JRNL AUTH 2 J.A.MESSER,A.L.SATZ,N.ANCELLIN,C.C.ARICO-MUENDEL,
JRNL AUTH 3 K.L.SARGENT BEDARD,A.BELJEAN,S.L.BELYANSKAYA,R.BINGHAM,
JRNL AUTH 4 S.E.SMITH,E.BOURSIER,P.CARTER,P.A.CENTRELLA,M.A.CLARK,
JRNL AUTH 5 C.W.CHUNG,C.P.DAVIE,J.L.DELOREY,Y.DING,G.J.FRANKLIN,
JRNL AUTH 6 L.C.GRADY,K.HERRY,C.HOBBS,C.S.KOLLMANN,B.A.MORGAN,
JRNL AUTH 7 L.J.POTHIER KAUSHANSKY,Q.ZHOU
JRNL TITL DISCOVERY, SAR, AND X-RAY BINDING MODE STUDY OF BCATM
JRNL TITL 2 INHIBITORS FROM A NOVEL DNA-ENCODED LIBRARY.
JRNL REF ACS MED.CHEM.LETT. V. 6 919 2015
JRNL REFN ISSN 1948-5875
JRNL PMID 26288694
JRNL DOI 10.1021/ACSMEDCHEMLETT.5B00179
REMARK 2
REMARK 2 RESOLUTION. 1.61 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0073
REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2
REMARK 3 NUMBER OF REFLECTIONS : 95729
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.170
REMARK 3 R VALUE (WORKING SET) : 0.168
REMARK 3 FREE R VALUE : 0.199
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 5024
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.61
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65
REMARK 3 REFLECTION IN BIN (WORKING SET) : 6783
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.84
REMARK 3 BIN R VALUE (WORKING SET) : 0.2990
REMARK 3 BIN FREE R VALUE SET COUNT : 377
REMARK 3 BIN FREE R VALUE : 0.3260
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 5732
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 130
REMARK 3 SOLVENT ATOMS : 1082
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.62
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -1.31000
REMARK 3 B22 (A**2) : 0.41000
REMARK 3 B33 (A**2) : 0.90000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.090
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.958
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6147 ; 0.008 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 5930 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8355 ; 1.360 ; 1.967
REMARK 3 BOND ANGLES OTHERS (DEGREES): 13624 ; 0.741 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 739 ; 4.602 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 267 ;32.418 ;23.258
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1041 ;10.889 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;12.365 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 893 ; 0.079 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6876 ; 0.006 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 1440 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2929 ; 1.691 ; 2.889
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2928 ; 1.690 ; 2.889
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3677 ; 2.569 ; 4.861
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3678 ; 2.569 ; 4.861
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3218 ; 2.273 ; 3.214
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3219 ; 2.273 ; 3.215
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4679 ; 3.591 ; 5.255
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8121 ; 6.163 ;15.037
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7429 ; 5.676 ;14.083
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : BABINET MODEL WITH MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 5CR5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-15.
REMARK 100 THE DEPOSITION ID IS D_1000212060.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 22-JUN-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418
REMARK 200 MONOCHROMATOR : NI FILTER
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : IMAGE PLATE
REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.0.9
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101131
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600
REMARK 200 RESOLUTION RANGE LOW (A) : 33.810
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4
REMARK 200 DATA REDUNDANCY : 6.900
REMARK 200 R MERGE (I) : 0.05800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63
REMARK 200 COMPLETENESS FOR SHELL (%) : 76.0
REMARK 200 DATA REDUNDANCY IN SHELL : 5.80
REMARK 200 R MERGE FOR SHELL (I) : 0.79100
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 47.77
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: MDL MORPHEUS SCREEN CONDITION B2, DTT,
REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.77500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.52500
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.79500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.52500
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.77500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.79500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 10180 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 26970 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -3
REMARK 465 SER A -2
REMARK 465 HIS A -1
REMARK 465 MET A 0
REMARK 465 ALA A 1
REMARK 465 SER A 2
REMARK 465 GLY A 23
REMARK 465 PRO A 24
REMARK 465 GLY A 25
REMARK 465 GLU A 26
REMARK 465 PRO A 27
REMARK 465 GLY B -3
REMARK 465 SER B -2
REMARK 465 HIS B -1
REMARK 465 MET B 0
REMARK 465 ALA B 1
REMARK 465 SER B 2
REMARK 465 PRO B 24
REMARK 465 GLY B 25
REMARK 465 GLU B 26
REMARK 465 PRO B 27
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH B 805 O HOH B 929 1.77
REMARK 500 O HOH A 842 O HOH A 957 1.82
REMARK 500 O HOH A 811 O HOH A 938 1.98
REMARK 500 O HOH B 672 O HOH B 883 2.10
REMARK 500 NE2 GLN A 346 O HOH A 501 2.14
REMARK 500 OE1 GLU A 150 OG1 THR A 159 2.15
REMARK 500 O HOH A 854 O HOH B 874 2.18
REMARK 500 O VAL B 29 O HOH B 501 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 92 51.00 37.99
REMARK 500 ASN A 149 36.11 -147.65
REMARK 500 GLN A 316 -73.25 73.05
REMARK 500 GLN A 316 -75.62 73.05
REMARK 500 LYS A 326 -100.53 67.99
REMARK 500 ARG B 92 47.25 38.28
REMARK 500 ASN B 149 39.28 -149.18
REMARK 500 CYS B 315 16.49 -144.50
REMARK 500 GLN B 316 -69.81 74.36
REMARK 500 PRO B 333 33.86 -82.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A1051 DISTANCE = 6.02 ANGSTROMS
REMARK 525 HOH A1052 DISTANCE = 6.11 ANGSTROMS
REMARK 525 HOH A1053 DISTANCE = 6.18 ANGSTROMS
REMARK 525 HOH A1054 DISTANCE = 6.34 ANGSTROMS
REMARK 525 HOH A1055 DISTANCE = 6.48 ANGSTROMS
REMARK 525 HOH A1056 DISTANCE = 6.96 ANGSTROMS
REMARK 525 HOH A1057 DISTANCE = 6.99 ANGSTROMS
REMARK 525 HOH B1023 DISTANCE = 6.56 ANGSTROMS
REMARK 525 HOH B1024 DISTANCE = 6.66 ANGSTROMS
REMARK 525 HOH B1025 DISTANCE = 7.10 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EL1 A 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EL1 B 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 403
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 405
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PLP B 401 and LYS B
REMARK 800 202
DBREF 5CR5 A 1 365 UNP O15382 BCAT2_HUMAN 28 392
DBREF 5CR5 B 1 365 UNP O15382 BCAT2_HUMAN 28 392
SEQADV 5CR5 GLY A -3 UNP O15382 EXPRESSION TAG
SEQADV 5CR5 SER A -2 UNP O15382 EXPRESSION TAG
SEQADV 5CR5 HIS A -1 UNP O15382 EXPRESSION TAG
SEQADV 5CR5 MET A 0 UNP O15382 EXPRESSION TAG
SEQADV 5CR5 GLY B -3 UNP O15382 EXPRESSION TAG
SEQADV 5CR5 SER B -2 UNP O15382 EXPRESSION TAG
SEQADV 5CR5 HIS B -1 UNP O15382 EXPRESSION TAG
SEQADV 5CR5 MET B 0 UNP O15382 EXPRESSION TAG
SEQRES 1 A 369 GLY SER HIS MET ALA SER SER SER PHE LYS ALA ALA ASP
SEQRES 2 A 369 LEU GLN LEU GLU MET THR GLN LYS PRO HIS LYS LYS PRO
SEQRES 3 A 369 GLY PRO GLY GLU PRO LEU VAL PHE GLY LYS THR PHE THR
SEQRES 4 A 369 ASP HIS MET LEU MET VAL GLU TRP ASN ASP LYS GLY TRP
SEQRES 5 A 369 GLY GLN PRO ARG ILE GLN PRO PHE GLN ASN LEU THR LEU
SEQRES 6 A 369 HIS PRO ALA SER SER SER LEU HIS TYR SER LEU GLN LEU
SEQRES 7 A 369 PHE GLU GLY MET LYS ALA PHE LYS GLY LYS ASP GLN GLN
SEQRES 8 A 369 VAL ARG LEU PHE ARG PRO TRP LEU ASN MET ASP ARG MET
SEQRES 9 A 369 LEU ARG SER ALA MET ARG LEU CYS LEU PRO SER PHE ASP
SEQRES 10 A 369 LYS LEU GLU LEU LEU GLU CYS ILE ARG ARG LEU ILE GLU
SEQRES 11 A 369 VAL ASP LYS ASP TRP VAL PRO ASP ALA ALA GLY THR SER
SEQRES 12 A 369 LEU TYR VAL ARG PRO VAL LEU ILE GLY ASN GLU PRO SER
SEQRES 13 A 369 LEU GLY VAL SER GLN PRO THR ARG ALA LEU LEU PHE VAL
SEQRES 14 A 369 ILE LEU CYS PRO VAL GLY ALA TYR PHE PRO GLY GLY SER
SEQRES 15 A 369 VAL THR PRO VAL SER LEU LEU ALA ASP PRO ALA PHE ILE
SEQRES 16 A 369 ARG ALA TRP VAL GLY GLY VAL GLY ASN TYR LYS LEU GLY
SEQRES 17 A 369 GLY ASN TYR GLY PRO THR VAL LEU VAL GLN GLN GLU ALA
SEQRES 18 A 369 LEU LYS ARG GLY CYS GLU GLN VAL LEU TRP LEU TYR GLY
SEQRES 19 A 369 PRO ASP HIS GLN LEU THR GLU VAL GLY THR MET ASN ILE
SEQRES 20 A 369 PHE VAL TYR TRP THR HIS GLU ASP GLY VAL LEU GLU LEU
SEQRES 21 A 369 VAL THR PRO PRO LEU ASN GLY VAL ILE LEU PRO GLY VAL
SEQRES 22 A 369 VAL ARG GLN SER LEU LEU ASP MET ALA GLN THR TRP GLY
SEQRES 23 A 369 GLU PHE ARG VAL VAL GLU ARG THR ILE THR MET LYS GLN
SEQRES 24 A 369 LEU LEU ARG ALA LEU GLU GLU GLY ARG VAL ARG GLU VAL
SEQRES 25 A 369 PHE GLY SER GLY THR ALA CYS GLN VAL CYS PRO VAL HIS
SEQRES 26 A 369 ARG ILE LEU TYR LYS ASP ARG ASN LEU HIS ILE PRO THR
SEQRES 27 A 369 MET GLU ASN GLY PRO GLU LEU ILE LEU ARG PHE GLN LYS
SEQRES 28 A 369 GLU LEU LYS GLU ILE GLN TYR GLY ILE ARG ALA HIS GLU
SEQRES 29 A 369 TRP MET PHE PRO VAL
SEQRES 1 B 369 GLY SER HIS MET ALA SER SER SER PHE LYS ALA ALA ASP
SEQRES 2 B 369 LEU GLN LEU GLU MET THR GLN LYS PRO HIS LYS LYS PRO
SEQRES 3 B 369 GLY PRO GLY GLU PRO LEU VAL PHE GLY LYS THR PHE THR
SEQRES 4 B 369 ASP HIS MET LEU MET VAL GLU TRP ASN ASP LYS GLY TRP
SEQRES 5 B 369 GLY GLN PRO ARG ILE GLN PRO PHE GLN ASN LEU THR LEU
SEQRES 6 B 369 HIS PRO ALA SER SER SER LEU HIS TYR SER LEU GLN LEU
SEQRES 7 B 369 PHE GLU GLY MET LYS ALA PHE LYS GLY LYS ASP GLN GLN
SEQRES 8 B 369 VAL ARG LEU PHE ARG PRO TRP LEU ASN MET ASP ARG MET
SEQRES 9 B 369 LEU ARG SER ALA MET ARG LEU CYS LEU PRO SER PHE ASP
SEQRES 10 B 369 LYS LEU GLU LEU LEU GLU CYS ILE ARG ARG LEU ILE GLU
SEQRES 11 B 369 VAL ASP LYS ASP TRP VAL PRO ASP ALA ALA GLY THR SER
SEQRES 12 B 369 LEU TYR VAL ARG PRO VAL LEU ILE GLY ASN GLU PRO SER
SEQRES 13 B 369 LEU GLY VAL SER GLN PRO THR ARG ALA LEU LEU PHE VAL
SEQRES 14 B 369 ILE LEU CYS PRO VAL GLY ALA TYR PHE PRO GLY GLY SER
SEQRES 15 B 369 VAL THR PRO VAL SER LEU LEU ALA ASP PRO ALA PHE ILE
SEQRES 16 B 369 ARG ALA TRP VAL GLY GLY VAL GLY ASN TYR LYS LEU GLY
SEQRES 17 B 369 GLY ASN TYR GLY PRO THR VAL LEU VAL GLN GLN GLU ALA
SEQRES 18 B 369 LEU LYS ARG GLY CYS GLU GLN VAL LEU TRP LEU TYR GLY
SEQRES 19 B 369 PRO ASP HIS GLN LEU THR GLU VAL GLY THR MET ASN ILE
SEQRES 20 B 369 PHE VAL TYR TRP THR HIS GLU ASP GLY VAL LEU GLU LEU
SEQRES 21 B 369 VAL THR PRO PRO LEU ASN GLY VAL ILE LEU PRO GLY VAL
SEQRES 22 B 369 VAL ARG GLN SER LEU LEU ASP MET ALA GLN THR TRP GLY
SEQRES 23 B 369 GLU PHE ARG VAL VAL GLU ARG THR ILE THR MET LYS GLN
SEQRES 24 B 369 LEU LEU ARG ALA LEU GLU GLU GLY ARG VAL ARG GLU VAL
SEQRES 25 B 369 PHE GLY SER GLY THR ALA CYS GLN VAL CYS PRO VAL HIS
SEQRES 26 B 369 ARG ILE LEU TYR LYS ASP ARG ASN LEU HIS ILE PRO THR
SEQRES 27 B 369 MET GLU ASN GLY PRO GLU LEU ILE LEU ARG PHE GLN LYS
SEQRES 28 B 369 GLU LEU LYS GLU ILE GLN TYR GLY ILE ARG ALA HIS GLU
SEQRES 29 B 369 TRP MET PHE PRO VAL
HET PLP A 401 15
HET EL1 A 402 35
HET CL A 403 1
HET EDO A 404 4
HET EDO A 405 4
HET EDO A 406 4
HET EDO A 407 4
HET EDO A 408 4
HET PLP B 401 15
HET EL1 B 402 35
HET CL B 403 1
HET EDO B 404 4
HET DMS B 405 4
HETNAM PLP PYRIDOXAL-5'-PHOSPHATE
HETNAM EL1 3-({(3R)-1-[(5-BROMOTHIOPHEN-2-YL)CARBONYL]PYRROLIDIN-
HETNAM 2 EL1 3-YL}OXY)-N-METHYL-2'-[(METHYLSULFONYL)AMINO]BIPHENYL-
HETNAM 3 EL1 4-CARBOXAMIDE
HETNAM CL CHLORIDE ION
HETNAM EDO 1,2-ETHANEDIOL
HETNAM DMS DIMETHYL SULFOXIDE
HETSYN PLP VITAMIN B6 PHOSPHATE
HETSYN EDO ETHYLENE GLYCOL
FORMUL 3 PLP 2(C8 H10 N O6 P)
FORMUL 4 EL1 2(C24 H24 BR N3 O5 S2)
FORMUL 5 CL 2(CL 1-)
FORMUL 6 EDO 6(C2 H6 O2)
FORMUL 15 DMS C2 H6 O S
FORMUL 16 HOH *1082(H2 O)
HELIX 1 AA1 LYS A 6 LEU A 10 5 5
HELIX 2 AA2 SER A 65 TYR A 70 1 6
HELIX 3 AA3 ARG A 92 LEU A 107 1 16
HELIX 4 AA4 ASP A 113 ASP A 128 1 16
HELIX 5 AA5 LYS A 129 VAL A 132 5 4
HELIX 6 AA6 LEU A 203 GLY A 208 5 6
HELIX 7 AA7 PRO A 209 ARG A 220 1 12
HELIX 8 AA8 GLY A 268 GLY A 282 1 15
HELIX 9 AA9 THR A 292 GLU A 302 1 11
HELIX 10 AB1 PRO A 333 GLY A 338 5 6
HELIX 11 AB2 PRO A 339 TYR A 354 1 16
HELIX 12 AB3 LYS B 6 LEU B 10 5 5
HELIX 13 AB4 SER B 65 TYR B 70 1 6
HELIX 14 AB5 ARG B 92 LEU B 107 1 16
HELIX 15 AB6 ASP B 113 ASP B 128 1 16
HELIX 16 AB7 LYS B 129 VAL B 132 5 4
HELIX 17 AB8 PHE B 174 SER B 178 5 5
HELIX 18 AB9 LEU B 203 GLY B 208 5 6
HELIX 19 AC1 PRO B 209 ARG B 220 1 12
HELIX 20 AC2 GLY B 268 GLY B 282 1 15
HELIX 21 AC3 THR B 292 GLU B 302 1 11
HELIX 22 AC4 THR B 334 GLY B 338 5 5
HELIX 23 AC5 PRO B 339 TYR B 354 1 16
SHEET 1 AA1 6 GLN A 11 LEU A 12 0
SHEET 2 AA1 6 ARG A 52 PRO A 55 1 O ILE A 53 N GLN A 11
SHEET 3 AA1 6 HIS A 37 ASN A 44 -1 N MET A 38 O GLN A 54
SHEET 4 AA1 6 ALA A 161 VAL A 170 -1 O LEU A 163 N VAL A 41
SHEET 5 AA1 6 SER A 139 GLY A 148 -1 N TYR A 141 O CYS A 168
SHEET 6 AA1 6 GLN A 73 PHE A 75 -1 N LEU A 74 O LEU A 146
SHEET 1 AA2 7 GLY A 47 TRP A 48 0
SHEET 2 AA2 7 HIS A 37 ASN A 44 -1 N ASN A 44 O GLY A 47
SHEET 3 AA2 7 ALA A 161 VAL A 170 -1 O LEU A 163 N VAL A 41
SHEET 4 AA2 7 SER A 139 GLY A 148 -1 N TYR A 141 O CYS A 168
SHEET 5 AA2 7 MET A 78 LYS A 82 -1 N MET A 78 O VAL A 142
SHEET 6 AA2 7 VAL A 88 PHE A 91 -1 O ARG A 89 N PHE A 81
SHEET 7 AA2 7 MET A 362 PRO A 364 -1 O PHE A 363 N LEU A 90
SHEET 1 AA3 2 LEU A 59 LEU A 61 0
SHEET 2 AA3 2 LEU B 59 LEU B 61 -1 O LEU B 61 N LEU A 59
SHEET 1 AA4 8 ARG A 285 GLU A 288 0
SHEET 2 AA4 8 LEU A 254 THR A 258 1 N LEU A 256 O VAL A 287
SHEET 3 AA4 8 MET A 241 THR A 248 -1 N TRP A 247 O GLU A 255
SHEET 4 AA4 8 GLN A 234 VAL A 238 -1 N VAL A 238 O MET A 241
SHEET 5 AA4 8 GLN A 224 TYR A 229 -1 N TYR A 229 O GLN A 234
SHEET 6 AA4 8 VAL A 182 ALA A 186 1 N LEU A 185 O LEU A 226
SHEET 7 AA4 8 GLN A 316 TYR A 325 1 O LEU A 324 N LEU A 184
SHEET 8 AA4 8 ARG A 328 HIS A 331 -1 O ARG A 328 N TYR A 325
SHEET 1 AA5 6 ARG A 285 GLU A 288 0
SHEET 2 AA5 6 LEU A 254 THR A 258 1 N LEU A 256 O VAL A 287
SHEET 3 AA5 6 MET A 241 THR A 248 -1 N TRP A 247 O GLU A 255
SHEET 4 AA5 6 VAL A 305 GLY A 312 -1 O GLU A 307 N TYR A 246
SHEET 5 AA5 6 GLN A 316 TYR A 325 -1 O GLN A 316 N GLY A 312
SHEET 6 AA5 6 ARG A 328 HIS A 331 -1 O ARG A 328 N TYR A 325
SHEET 1 AA6 6 GLN B 11 LEU B 12 0
SHEET 2 AA6 6 ARG B 52 PRO B 55 1 O ILE B 53 N GLN B 11
SHEET 3 AA6 6 HIS B 37 ASN B 44 -1 N MET B 40 O ARG B 52
SHEET 4 AA6 6 ALA B 161 VAL B 170 -1 O LEU B 163 N VAL B 41
SHEET 5 AA6 6 SER B 139 GLY B 148 -1 N TYR B 141 O CYS B 168
SHEET 6 AA6 6 GLN B 73 PHE B 75 -1 N LEU B 74 O LEU B 146
SHEET 1 AA7 7 GLY B 47 TRP B 48 0
SHEET 2 AA7 7 HIS B 37 ASN B 44 -1 N ASN B 44 O GLY B 47
SHEET 3 AA7 7 ALA B 161 VAL B 170 -1 O LEU B 163 N VAL B 41
SHEET 4 AA7 7 SER B 139 GLY B 148 -1 N TYR B 141 O CYS B 168
SHEET 5 AA7 7 MET B 78 LYS B 82 -1 N MET B 78 O VAL B 142
SHEET 6 AA7 7 VAL B 88 PHE B 91 -1 O ARG B 89 N PHE B 81
SHEET 7 AA7 7 MET B 362 PRO B 364 -1 O PHE B 363 N LEU B 90
SHEET 1 AA8 8 ARG B 285 GLU B 288 0
SHEET 2 AA8 8 LEU B 254 THR B 258 1 N LEU B 256 O VAL B 287
SHEET 3 AA8 8 MET B 241 THR B 248 -1 N TRP B 247 O GLU B 255
SHEET 4 AA8 8 GLN B 234 VAL B 238 -1 N VAL B 238 O MET B 241
SHEET 5 AA8 8 GLN B 224 TYR B 229 -1 N TYR B 229 O GLN B 234
SHEET 6 AA8 8 VAL B 182 ALA B 186 1 N LEU B 185 O LEU B 226
SHEET 7 AA8 8 GLN B 316 TYR B 325 1 O LEU B 324 N LEU B 184
SHEET 8 AA8 8 ARG B 328 HIS B 331 -1 O LEU B 330 N ILE B 323
SHEET 1 AA9 6 ARG B 285 GLU B 288 0
SHEET 2 AA9 6 LEU B 254 THR B 258 1 N LEU B 256 O VAL B 287
SHEET 3 AA9 6 MET B 241 THR B 248 -1 N TRP B 247 O GLU B 255
SHEET 4 AA9 6 VAL B 305 GLY B 312 -1 O GLU B 307 N TYR B 246
SHEET 5 AA9 6 GLN B 316 TYR B 325 -1 O GLN B 316 N GLY B 312
SHEET 6 AA9 6 ARG B 328 HIS B 331 -1 O LEU B 330 N ILE B 323
LINK NZ LYS A 202 C4A PLP A 401 1555 1555 1.30
LINK NZ LYS B 202 C4A PLP B 401 1555 1555 1.30
CISPEP 1 GLY A 338 PRO A 339 0 -0.35
CISPEP 2 GLY B 338 PRO B 339 0 -1.85
SITE 1 AC1 16 ARG A 99 LYS A 202 TYR A 207 GLU A 237
SITE 2 AC1 16 THR A 240 ASN A 242 LEU A 266 GLY A 268
SITE 3 AC1 16 VAL A 269 VAL A 270 GLY A 312 THR A 313
SITE 4 AC1 16 EL1 A 402 HOH A 548 HOH A 662 HOH A 718
SITE 1 AC2 18 PHE A 30 PHE A 75 ARG A 143 TYR A 173
SITE 2 AC2 18 VAL A 182 GLN A 224 VAL A 238 GLY A 239
SITE 3 AC2 18 THR A 240 MET A 241 GLY A 312 THR A 313
SITE 4 AC2 18 ALA A 314 CYS A 318 PLP A 401 HOH A 522
SITE 5 AC2 18 HOH A 612 TYR B 70
SITE 1 AC3 3 LYS A 79 GLN A 316 HOH A 654
SITE 1 AC4 5 TYR A 246 ARG A 306 ARG A 344 HOH A 519
SITE 2 AC4 5 HOH A 568
SITE 1 AC5 5 GLN A 234 ASN A 262 THR A 290 HOH A 524
SITE 2 AC5 5 HOH A 566
SITE 1 AC6 8 ILE A 191 TRP A 194 TYR A 229 GLY A 230
SITE 2 AC6 8 HOH A 529 HOH A 601 HOH A 637 TRP B 194
SITE 1 AC7 4 GLU A 42 LEU A 59 THR A 60 HOH A 647
SITE 1 AC8 5 LEU A 261 ASN A 262 HOH A 809 ALA B 358
SITE 2 AC8 5 HIS B 359
SITE 1 AC9 17 TYR A 70 PHE B 30 ARG B 143 TYR B 173
SITE 2 AC9 17 VAL B 182 GLN B 224 VAL B 238 GLY B 239
SITE 3 AC9 17 THR B 240 MET B 241 GLY B 312 THR B 313
SITE 4 AC9 17 ALA B 314 CYS B 318 PLP B 401 HOH B 514
SITE 5 AC9 17 HOH B 529
SITE 1 AD1 2 LYS B 79 GLN B 316
SITE 1 AD2 4 TYR B 246 ARG B 306 GLU B 340 ARG B 344
SITE 1 AD3 4 GLU B 42 LEU B 59 THR B 60 HOH B 684
SITE 1 AD4 21 LEU B 74 PHE B 75 ARG B 99 SER B 103
SITE 2 AD4 21 TYR B 201 LEU B 203 TYR B 207 GLU B 237
SITE 3 AD4 21 THR B 240 ASN B 242 LEU B 266 GLY B 268
SITE 4 AD4 21 VAL B 269 VAL B 270 GLY B 312 THR B 313
SITE 5 AD4 21 EL1 B 402 HOH B 502 HOH B 519 HOH B 599
SITE 6 AD4 21 HOH B 721
CRYST1 69.550 105.590 107.050 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014378 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009471 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009341 0.00000