HEADER TOXIN 22-JUL-15 5CR8 TITLE STRUCTURE OF THE MEMBRANE-BINDING DOMAIN OF PNEUMOLYSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PNEUMOLYSIN; COMPND 3 CHAIN: D, A; COMPND 4 FRAGMENT: DOMAIN 4, UNP RESIDUES 359-471; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 GENE: PLY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TOXIN, CHOLESTEROL-DEPENDENT CYTOLYSIN, VIRULENCE FACTOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.MARSHALL,B.H.A.FARAJ,A.R.GINGRAS,R.LONNEN,M.A.SHEIKH,M.EL- AUTHOR 2 MEZGUELDI,P.C.E.MOODY,P.W.ANDREW,R.WALLIS REVDAT 2 10-JAN-24 5CR8 1 REMARK REVDAT 1 16-SEP-15 5CR8 0 JRNL AUTH J.E.MARSHALL,B.H.FARAJ,A.R.GINGRAS,R.LONNEN,M.A.SHEIKH, JRNL AUTH 2 M.EL-MEZGUELDI,P.C.MOODY,P.W.ANDREW,R.WALLIS JRNL TITL THE CRYSTAL STRUCTURE OF PNEUMOLYSIN AT 2.0 ANGSTROM JRNL TITL 2 RESOLUTION REVEALS THE MOLECULAR PACKING OF THE PRE-PORE JRNL TITL 3 COMPLEX. JRNL REF SCI REP V. 5 13293 2015 JRNL REFN ESSN 2045-2322 JRNL PMID 26333773 JRNL DOI 10.1038/SREP13293 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 13829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5400 - 3.5051 0.99 2697 133 0.1964 0.2390 REMARK 3 2 3.5051 - 2.7822 1.00 2639 142 0.2271 0.3049 REMARK 3 3 2.7822 - 2.4305 0.99 2577 153 0.2403 0.2673 REMARK 3 4 2.4305 - 2.2083 1.00 2655 127 0.2547 0.3141 REMARK 3 5 2.2083 - 2.0500 0.99 2575 131 0.2603 0.2813 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1920 REMARK 3 ANGLE : 0.946 2620 REMARK 3 CHIRALITY : 0.035 284 REMARK 3 PLANARITY : 0.004 330 REMARK 3 DIHEDRAL : 12.228 692 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 359 THROUGH 372 ) REMARK 3 ORIGIN FOR THE GROUP (A): -86.1063 3.6431 221.8116 REMARK 3 T TENSOR REMARK 3 T11: 0.1156 T22: 0.1049 REMARK 3 T33: 0.1997 T12: 0.0082 REMARK 3 T13: 0.0426 T23: -0.0747 REMARK 3 L TENSOR REMARK 3 L11: 2.2787 L22: 2.9219 REMARK 3 L33: 2.9816 L12: -0.5238 REMARK 3 L13: -0.5000 L23: 0.4248 REMARK 3 S TENSOR REMARK 3 S11: 0.2562 S12: 0.1952 S13: 0.1395 REMARK 3 S21: 0.4056 S22: 0.1346 S23: -1.0349 REMARK 3 S31: 0.5189 S32: -0.1524 S33: -0.0663 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 373 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): -91.5271 10.1565 210.9186 REMARK 3 T TENSOR REMARK 3 T11: -0.4951 T22: 0.4840 REMARK 3 T33: 0.2371 T12: 0.0712 REMARK 3 T13: 0.2009 T23: 0.1948 REMARK 3 L TENSOR REMARK 3 L11: 1.0344 L22: 1.0789 REMARK 3 L33: 6.3915 L12: 0.0147 REMARK 3 L13: -0.3875 L23: -0.1514 REMARK 3 S TENSOR REMARK 3 S11: 0.1866 S12: 0.5887 S13: 0.6370 REMARK 3 S21: -1.5880 S22: -0.1203 S23: 0.1528 REMARK 3 S31: 0.5156 S32: -0.6648 S33: 0.0293 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 385 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): -94.1314 11.5182 196.1510 REMARK 3 T TENSOR REMARK 3 T11: 0.7920 T22: 0.8556 REMARK 3 T33: 0.3348 T12: 0.0873 REMARK 3 T13: 0.0590 T23: 0.1792 REMARK 3 L TENSOR REMARK 3 L11: 0.9126 L22: 1.1463 REMARK 3 L33: 0.0509 L12: 0.3822 REMARK 3 L13: -0.0694 L23: 0.1864 REMARK 3 S TENSOR REMARK 3 S11: -0.0469 S12: 1.1327 S13: 0.3342 REMARK 3 S21: -1.0173 S22: 0.2470 S23: 0.0830 REMARK 3 S31: -0.2359 S32: -0.0237 S33: 0.0114 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 397 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): -95.5392 5.6653 224.0914 REMARK 3 T TENSOR REMARK 3 T11: 0.1542 T22: 0.4296 REMARK 3 T33: -0.1311 T12: -0.0686 REMARK 3 T13: 0.2464 T23: 0.2449 REMARK 3 L TENSOR REMARK 3 L11: 0.7481 L22: 1.0987 REMARK 3 L33: 4.7442 L12: -0.7534 REMARK 3 L13: 1.5298 L23: -2.4839 REMARK 3 S TENSOR REMARK 3 S11: -1.0053 S12: -0.6440 S13: 0.2498 REMARK 3 S21: 0.5492 S22: -0.4772 S23: 0.5825 REMARK 3 S31: 0.2843 S32: -1.4780 S33: 0.0812 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 408 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): -89.0747 8.3934 217.0639 REMARK 3 T TENSOR REMARK 3 T11: 0.1830 T22: 0.1881 REMARK 3 T33: 0.1310 T12: 0.0309 REMARK 3 T13: -0.0092 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.7129 L22: 2.7672 REMARK 3 L33: 2.5965 L12: 0.3185 REMARK 3 L13: 0.2253 L23: 0.3200 REMARK 3 S TENSOR REMARK 3 S11: 0.2120 S12: 0.2213 S13: 0.2112 REMARK 3 S21: -0.1853 S22: -0.1373 S23: -0.1774 REMARK 3 S31: -0.0449 S32: -0.2171 S33: 0.0184 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 431 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): -91.2710 18.5195 228.1306 REMARK 3 T TENSOR REMARK 3 T11: 0.2166 T22: 0.1282 REMARK 3 T33: 0.4498 T12: 0.0081 REMARK 3 T13: -0.0133 T23: -0.0663 REMARK 3 L TENSOR REMARK 3 L11: 1.5634 L22: 2.9417 REMARK 3 L33: 4.5844 L12: 0.6385 REMARK 3 L13: -0.7675 L23: -0.7344 REMARK 3 S TENSOR REMARK 3 S11: -0.3747 S12: 0.3264 S13: -0.3976 REMARK 3 S21: 0.9238 S22: 0.5804 S23: 0.4122 REMARK 3 S31: -0.5957 S32: -1.1258 S33: -0.1699 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 443 THROUGH 471 ) REMARK 3 ORIGIN FOR THE GROUP (A): -79.8391 6.8915 221.6275 REMARK 3 T TENSOR REMARK 3 T11: 0.2184 T22: 0.1287 REMARK 3 T33: 0.3632 T12: -0.0206 REMARK 3 T13: 0.0154 T23: -0.1080 REMARK 3 L TENSOR REMARK 3 L11: 1.6180 L22: 1.6677 REMARK 3 L33: 2.8101 L12: 0.0232 REMARK 3 L13: -0.7627 L23: 0.3843 REMARK 3 S TENSOR REMARK 3 S11: 0.3315 S12: -0.1456 S13: 0.3234 REMARK 3 S21: 0.1120 S22: 0.6781 S23: -1.5807 REMARK 3 S31: -0.1133 S32: 0.5420 S33: -0.2267 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 359 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): -64.3380 11.9397 216.3711 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.1891 REMARK 3 T33: 0.1364 T12: -0.0245 REMARK 3 T13: -0.0338 T23: 0.0498 REMARK 3 L TENSOR REMARK 3 L11: 1.4328 L22: 2.5382 REMARK 3 L33: 3.4024 L12: -0.2353 REMARK 3 L13: -0.0566 L23: -0.9159 REMARK 3 S TENSOR REMARK 3 S11: 0.0883 S12: -0.3550 S13: -0.1535 REMARK 3 S21: 0.0713 S22: -0.0222 S23: -0.1971 REMARK 3 S31: -0.0702 S32: -0.1155 S33: -0.0584 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 385 THROUGH 389 ) REMARK 3 ORIGIN FOR THE GROUP (A): -69.4790 4.0156 243.4582 REMARK 3 T TENSOR REMARK 3 T11: 0.6781 T22: 1.7812 REMARK 3 T33: 1.2787 T12: -0.2191 REMARK 3 T13: 0.0528 T23: -0.6111 REMARK 3 L TENSOR REMARK 3 L11: 0.8162 L22: 0.0460 REMARK 3 L33: 0.3559 L12: -0.1987 REMARK 3 L13: 0.5452 L23: -0.1294 REMARK 3 S TENSOR REMARK 3 S11: 0.1055 S12: 0.2762 S13: -0.1008 REMARK 3 S21: -0.0849 S22: 0.0839 S23: -0.2027 REMARK 3 S31: -0.0145 S32: 0.1100 S33: -0.0549 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 390 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): -67.5048 12.1504 218.4388 REMARK 3 T TENSOR REMARK 3 T11: 0.1420 T22: 0.2491 REMARK 3 T33: 0.1411 T12: -0.0247 REMARK 3 T13: -0.0177 T23: 0.0463 REMARK 3 L TENSOR REMARK 3 L11: 1.4050 L22: 1.7946 REMARK 3 L33: 0.9256 L12: -0.0900 REMARK 3 L13: 0.0647 L23: 0.3965 REMARK 3 S TENSOR REMARK 3 S11: -0.0348 S12: -0.2825 S13: -0.0359 REMARK 3 S21: 0.1437 S22: -0.0311 S23: -0.1647 REMARK 3 S31: 0.1473 S32: -0.2522 S33: 0.1106 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 422 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): -66.7006 3.0395 203.7783 REMARK 3 T TENSOR REMARK 3 T11: 0.2691 T22: 0.1995 REMARK 3 T33: 0.2544 T12: -0.0765 REMARK 3 T13: 0.0702 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.2523 L22: 2.3516 REMARK 3 L33: 3.5439 L12: 0.8716 REMARK 3 L13: 0.8387 L23: 1.6635 REMARK 3 S TENSOR REMARK 3 S11: 0.1859 S12: -0.0110 S13: -0.1678 REMARK 3 S21: -0.2353 S22: -0.1328 S23: -0.0686 REMARK 3 S31: 0.6971 S32: -0.2661 S33: -0.0685 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 443 THROUGH 461 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.2616 11.6293 210.4200 REMARK 3 T TENSOR REMARK 3 T11: 0.1525 T22: 0.1248 REMARK 3 T33: 0.1551 T12: 0.0345 REMARK 3 T13: 0.0247 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.1010 L22: 1.2787 REMARK 3 L33: 2.4560 L12: 0.6377 REMARK 3 L13: 0.5342 L23: 0.6300 REMARK 3 S TENSOR REMARK 3 S11: 0.1728 S12: 0.0045 S13: -0.2452 REMARK 3 S21: -0.0862 S22: 0.3287 S23: -0.5166 REMARK 3 S31: 0.1254 S32: 0.6215 S33: -0.1725 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 462 THROUGH 471 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.5381 14.7117 212.1178 REMARK 3 T TENSOR REMARK 3 T11: 0.2090 T22: 0.3142 REMARK 3 T33: 0.4063 T12: 0.0781 REMARK 3 T13: -0.0432 T23: -0.0657 REMARK 3 L TENSOR REMARK 3 L11: 2.3810 L22: 3.0957 REMARK 3 L33: 8.0229 L12: 0.8974 REMARK 3 L13: 2.7573 L23: 2.1858 REMARK 3 S TENSOR REMARK 3 S11: -0.5456 S12: -0.0275 S13: 0.7050 REMARK 3 S21: 0.0926 S22: -0.0763 S23: -1.6661 REMARK 3 S31: -1.0695 S32: 0.7008 S33: 0.0829 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 1050 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212074. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13832 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 46.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45100 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CR6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 2K MME CONTAINING 100 MM REMARK 280 POTASSIUM THIOCYANATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 14.70869 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.84000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.80902 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 14.70869 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.84000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 47.80902 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 587 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE1 TRP A 379 O HOH A 501 1.86 REMARK 500 O GLY A 416 O HOH A 502 1.89 REMARK 500 O HOH D 554 O HOH D 563 1.94 REMARK 500 O SER A 383 O HOH A 503 1.96 REMARK 500 O HOH A 569 O HOH A 583 1.98 REMARK 500 O HOH D 505 O HOH D 558 1.99 REMARK 500 NH2 ARG A 359 O HOH A 504 2.02 REMARK 500 O HOH A 559 O HOH A 577 2.02 REMARK 500 OG SER D 383 O HOH D 501 2.04 REMARK 500 O HOH D 507 O HOH A 556 2.07 REMARK 500 OG SER D 422 O HOH D 502 2.08 REMARK 500 O ASP A 403 O HOH A 505 2.10 REMARK 500 OG SER A 383 O HOH A 506 2.10 REMARK 500 OE1 GLU A 469 O HOH A 507 2.11 REMARK 500 NE2 GLN A 463 O HOH A 508 2.11 REMARK 500 O HOH D 530 O HOH D 564 2.12 REMARK 500 O HOH D 553 O HOH A 573 2.13 REMARK 500 O HOH D 509 O HOH D 531 2.14 REMARK 500 O HOH D 572 O HOH A 565 2.17 REMARK 500 O HOH D 568 O HOH A 562 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 557 O HOH A 574 1455 2.04 REMARK 500 O HOH D 509 O HOH A 579 4349 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA D 370 46.47 -86.54 REMARK 500 LEU D 431 -93.71 -109.52 REMARK 500 GLU D 441 117.41 -160.57 REMARK 500 ASN D 470 28.16 -147.38 REMARK 500 ALA A 370 46.77 -86.26 REMARK 500 LEU A 431 -91.42 -106.74 REMARK 500 ASN A 470 29.95 -142.50 REMARK 500 REMARK 500 REMARK: NULL DBREF 5CR8 D 359 471 UNP A4GRG6 A4GRG6_STREE 359 471 DBREF 5CR8 A 359 471 UNP A4GRG6 A4GRG6_STREE 359 471 SEQRES 1 D 113 ARG ASN GLY ASP LEU LEU LEU ASP HIS SER GLY ALA TYR SEQRES 2 D 113 VAL ALA GLN TYR TYR ILE THR TRP ASN GLU LEU SER TYR SEQRES 3 D 113 ASP HIS GLN GLY LYS GLU VAL LEU THR PRO LYS ALA TRP SEQRES 4 D 113 ASP ARG ASN GLY GLN ASP LEU THR ALA HIS PHE THR THR SEQRES 5 D 113 SER ILE PRO LEU LYS GLY ASN VAL ARG ASN LEU SER VAL SEQRES 6 D 113 LYS ILE ARG GLU CYS THR GLY LEU ALA TRP GLU TRP TRP SEQRES 7 D 113 ARG THR VAL TYR GLU LYS THR ASP LEU PRO LEU VAL ARG SEQRES 8 D 113 LYS ARG THR ILE SER ILE TRP GLY THR THR LEU TYR PRO SEQRES 9 D 113 GLN VAL GLU ASP LYS VAL GLU ASN ASP SEQRES 1 A 113 ARG ASN GLY ASP LEU LEU LEU ASP HIS SER GLY ALA TYR SEQRES 2 A 113 VAL ALA GLN TYR TYR ILE THR TRP ASN GLU LEU SER TYR SEQRES 3 A 113 ASP HIS GLN GLY LYS GLU VAL LEU THR PRO LYS ALA TRP SEQRES 4 A 113 ASP ARG ASN GLY GLN ASP LEU THR ALA HIS PHE THR THR SEQRES 5 A 113 SER ILE PRO LEU LYS GLY ASN VAL ARG ASN LEU SER VAL SEQRES 6 A 113 LYS ILE ARG GLU CYS THR GLY LEU ALA TRP GLU TRP TRP SEQRES 7 A 113 ARG THR VAL TYR GLU LYS THR ASP LEU PRO LEU VAL ARG SEQRES 8 A 113 LYS ARG THR ILE SER ILE TRP GLY THR THR LEU TYR PRO SEQRES 9 A 113 GLN VAL GLU ASP LYS VAL GLU ASN ASP FORMUL 3 HOH *165(H2 O) SHEET 1 AA1 4 PHE D 408 LEU D 414 0 SHEET 2 AA1 4 GLY D 361 HIS D 367 -1 N HIS D 367 O PHE D 408 SHEET 3 AA1 4 LYS D 450 GLY D 457 1 O ILE D 455 N ASP D 366 SHEET 4 AA1 4 PRO D 462 GLU D 469 -1 O GLN D 463 N TRP D 456 SHEET 1 AA2 4 GLU D 390 ALA D 396 0 SHEET 2 AA2 4 ALA D 373 TYR D 384 -1 N GLU D 381 O THR D 393 SHEET 3 AA2 4 VAL D 418 GLY D 430 -1 O ARG D 419 N ASN D 380 SHEET 4 AA2 4 GLU D 434 LEU D 445 -1 O TRP D 435 N THR D 429 SHEET 1 AA3 4 PHE A 408 LEU A 414 0 SHEET 2 AA3 4 GLY A 361 HIS A 367 -1 N HIS A 367 O PHE A 408 SHEET 3 AA3 4 LYS A 450 GLY A 457 1 O ILE A 453 N LEU A 364 SHEET 4 AA3 4 PRO A 462 GLU A 469 -1 O GLN A 463 N TRP A 456 SHEET 1 AA4 4 LYS A 389 ALA A 396 0 SHEET 2 AA4 4 ALA A 373 ASP A 385 -1 N SER A 383 O VAL A 391 SHEET 3 AA4 4 VAL A 418 THR A 429 -1 O ARG A 419 N ASN A 380 SHEET 4 AA4 4 TRP A 435 LEU A 445 -1 O VAL A 439 N ILE A 425 CISPEP 1 ALA D 406 HIS D 407 0 -8.15 CISPEP 2 ALA A 406 HIS A 407 0 -9.00 CRYST1 48.680 47.680 97.539 90.00 101.39 90.00 I 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020542 0.000000 0.004139 0.00000 SCALE2 0.000000 0.020973 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010458 0.00000