HEADER IMMUNE SYSTEM 23-JUL-15 5CSG TITLE THE CRYSTAL STRUCTURE OF BETA2-MICROGLOBULIN R97Q MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 21-119; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-2 MICROGLOBULIN, AMYLOIDOSIS, ROOM TEMPERATURE, IMMUNOGLOBULIN- KEYWDS 2 LIKE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.DE ROSA,M.BOLOGNESI,S.RICAGNO REVDAT 3 10-JAN-24 5CSG 1 REMARK REVDAT 2 27-JUN-18 5CSG 1 JRNL REVDAT 1 10-AUG-16 5CSG 0 JRNL AUTH T.LE MARCHAND,M.DE ROSA,N.SALVI,B.M.SALA,L.B.ANDREAS, JRNL AUTH 2 E.BARBET-MASSIN,P.SORMANNI,A.BARBIROLI,R.PORCARI, JRNL AUTH 3 C.SOUSA MOTA,D.DE SANCTIS,M.BOLOGNESI,L.EMSLEY,V.BELLOTTI, JRNL AUTH 4 M.BLACKLEDGE,C.CAMILLONI,G.PINTACUDA,S.RICAGNO JRNL TITL CONFORMATIONAL DYNAMICS IN CRYSTALS REVEAL THE MOLECULAR JRNL TITL 2 BASES FOR D76N BETA-2 MICROGLOBULIN AGGREGATION PROPENSITY. JRNL REF NAT COMMUN V. 9 1658 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29695721 JRNL DOI 10.1038/S41467-018-04078-Y REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 15146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8329 - 2.5648 0.94 3005 157 0.1550 0.1946 REMARK 3 2 2.5648 - 2.0358 0.94 2897 156 0.1823 0.2068 REMARK 3 3 2.0358 - 1.7784 0.92 2822 155 0.1839 0.2577 REMARK 3 4 1.7784 - 1.6158 0.95 2902 150 0.2331 0.3151 REMARK 3 5 1.6158 - 1.5000 0.90 2755 147 0.2984 0.3671 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 984 REMARK 3 ANGLE : 1.580 1352 REMARK 3 CHIRALITY : 0.083 142 REMARK 3 PLANARITY : 0.008 180 REMARK 3 DIHEDRAL : 15.186 399 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7229 -22.0382 6.7733 REMARK 3 T TENSOR REMARK 3 T11: 0.0825 T22: 0.1471 REMARK 3 T33: 0.1607 T12: -0.0098 REMARK 3 T13: -0.0166 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.3928 L22: 3.4265 REMARK 3 L33: 7.6834 L12: -1.0595 REMARK 3 L13: 1.7375 L23: -4.6358 REMARK 3 S TENSOR REMARK 3 S11: 0.0994 S12: -0.0121 S13: -0.0005 REMARK 3 S21: -0.1582 S22: 0.2388 S23: 0.2315 REMARK 3 S31: 0.2722 S32: -0.3583 S33: -0.4472 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8039 -6.4005 -13.7885 REMARK 3 T TENSOR REMARK 3 T11: 0.1655 T22: 0.2369 REMARK 3 T33: 0.3811 T12: 0.0273 REMARK 3 T13: -0.0127 T23: 0.1104 REMARK 3 L TENSOR REMARK 3 L11: 4.8436 L22: 4.7878 REMARK 3 L33: 9.0456 L12: -3.7596 REMARK 3 L13: 6.6137 L23: -5.3031 REMARK 3 S TENSOR REMARK 3 S11: 0.0803 S12: 1.1265 S13: 1.4336 REMARK 3 S21: -0.2840 S22: -0.3662 S23: -0.3412 REMARK 3 S31: -0.4119 S32: 0.3919 S33: 0.2056 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6991 -15.3229 3.8744 REMARK 3 T TENSOR REMARK 3 T11: 0.1208 T22: 0.1206 REMARK 3 T33: 0.1395 T12: 0.0092 REMARK 3 T13: -0.0063 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.7315 L22: 2.8328 REMARK 3 L33: 2.6143 L12: 0.4767 REMARK 3 L13: -0.7239 L23: -2.6985 REMARK 3 S TENSOR REMARK 3 S11: 0.1406 S12: 0.1875 S13: 0.0503 REMARK 3 S21: -0.0188 S22: -0.0022 S23: 0.0418 REMARK 3 S31: -0.0305 S32: -0.0457 S33: -0.1461 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5610 -10.7966 4.3229 REMARK 3 T TENSOR REMARK 3 T11: 0.1995 T22: 0.1241 REMARK 3 T33: 0.2174 T12: -0.0122 REMARK 3 T13: -0.0191 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 8.3419 L22: 0.3989 REMARK 3 L33: 8.2859 L12: -1.1041 REMARK 3 L13: -5.6316 L23: 1.8059 REMARK 3 S TENSOR REMARK 3 S11: 0.1191 S12: -0.1753 S13: 0.3709 REMARK 3 S21: -0.0671 S22: 0.0009 S23: -0.1095 REMARK 3 S31: -0.1456 S32: 0.3057 S33: -0.0356 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9932 -16.0549 -1.5614 REMARK 3 T TENSOR REMARK 3 T11: 0.1144 T22: 0.1104 REMARK 3 T33: 0.1258 T12: -0.0061 REMARK 3 T13: -0.0016 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.4666 L22: 2.3219 REMARK 3 L33: 6.7123 L12: 0.1420 REMARK 3 L13: -0.1501 L23: -2.1702 REMARK 3 S TENSOR REMARK 3 S11: 0.0331 S12: 0.2026 S13: 0.0085 REMARK 3 S21: -0.2682 S22: -0.1235 S23: -0.1365 REMARK 3 S31: 0.2324 S32: 0.3807 S33: 0.0601 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2591 -22.0566 -7.0714 REMARK 3 T TENSOR REMARK 3 T11: 0.3657 T22: 0.2367 REMARK 3 T33: 0.2471 T12: 0.0094 REMARK 3 T13: -0.0534 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 7.0311 L22: 6.6732 REMARK 3 L33: 3.4987 L12: -3.8500 REMARK 3 L13: 4.9271 L23: -3.1536 REMARK 3 S TENSOR REMARK 3 S11: 0.5632 S12: 0.6045 S13: -0.6098 REMARK 3 S21: -1.0087 S22: -0.0147 S23: 0.5920 REMARK 3 S31: 0.9055 S32: 0.2316 S33: -0.5187 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CSG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212115. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15172 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2YXF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 4000, 0.1 M SODIUM ACETATE, REMARK 280 15% GLYCEROL, 0.2 M AMMONIUM ACETATE, PH 5.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 24.38327 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.53500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.31753 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 24.38327 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.53500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 30.31753 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 302 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 202 O HOH A 238 2.08 REMARK 500 O HOH A 235 O HOH A 266 2.08 REMARK 500 NE ARG A 3 O GLY A 29 2.12 REMARK 500 OE1 GLU A 16 O HOH A 201 2.16 REMARK 500 O HOH A 295 O HOH A 304 2.16 REMARK 500 O HOH A 266 O HOH A 276 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 283 O HOH A 293 2555 1.95 REMARK 500 O HOH A 293 O HOH A 294 2555 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 80 CB CYS A 80 SG 0.191 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 25 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 CYS A 80 CA - CB - SG ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 57 -98.23 -106.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YXF RELATED DB: PDB REMARK 900 WILD TYPE DBREF 5CSG A 1 99 UNP P61769 B2MG_HUMAN 21 119 SEQADV 5CSG MET A 0 UNP P61769 INITIATING METHIONINE SEQADV 5CSG GLN A 97 UNP P61769 ARG 117 ENGINEERED MUTATION SEQRES 1 A 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 A 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 A 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 A 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 A 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 A 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 A 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 A 100 LYS ILE VAL LYS TRP ASP GLN ASP MET HET ACT A 101 4 HETNAM ACT ACETATE ION FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 HOH *105(H2 O) SHEET 1 AA1 4 LYS A 6 ARG A 12 0 SHEET 2 AA1 4 PHE A 22 PHE A 30 -1 O ASN A 24 N TYR A 10 SHEET 3 AA1 4 PHE A 62 GLU A 69 -1 O LEU A 64 N VAL A 27 SHEET 4 AA1 4 HIS A 51 PHE A 56 -1 N ASP A 53 O LEU A 65 SHEET 1 AA2 4 GLU A 44 ARG A 45 0 SHEET 2 AA2 4 GLU A 36 LYS A 41 -1 N LYS A 41 O GLU A 44 SHEET 3 AA2 4 TYR A 78 ASN A 83 -1 O ALA A 79 N LEU A 40 SHEET 4 AA2 4 LYS A 91 LYS A 94 -1 O LYS A 91 N VAL A 82 SSBOND 1 CYS A 25 CYS A 80 1555 1555 2.07 CISPEP 1 HIS A 31 PRO A 32 0 -4.65 SITE 1 AC1 3 PHE A 22 ASN A 24 HOH A 240 CRYST1 57.353 29.070 61.240 90.00 98.06 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017436 0.000000 0.002470 0.00000 SCALE2 0.000000 0.034400 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016492 0.00000