HEADER TRANSFERASE 24-JUL-15 5CTP TITLE CRYSTAL STRUCTURE OF CK2ALPHA WITH N-(3-(3-CHLORO-4-(PHENYL) TITLE 2 BENZYLAMINO)PROPYL)ACETAMIDE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE II SUBUNIT ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 2-329 AND N-TERMINAL EXTENSION COMPND 5 GSMDIEFDDDADDDGSGSGSGSGS; COMPND 6 SYNONYM: CK II ALPHA; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSNK2A1, CK2A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHAT4 KEYWDS CK2ALPHA, CK2A, FRAGMENT BASED DRUG DISCOVERY, HIGH CONCENTRATION KEYWDS 2 SCREENING, SELECTIVE ATP COMPETITIVE INHIBITORS, SURFACE ENTROPHY KEYWDS 3 REDUCTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.BREAR,C.DE FUSCO,K.H.GEORGIOU,D.SPRING,M.HYVONEN REVDAT 4 10-JAN-24 5CTP 1 REMARK REVDAT 3 07-JUN-17 5CTP 1 JRNL REVDAT 2 24-MAY-17 5CTP 1 JRNL REVDAT 1 30-NOV-16 5CTP 0 JRNL AUTH C.DE FUSCO,P.BREAR,J.IEGRE,K.H.GEORGIOU,H.F.SORE,M.HYVONEN, JRNL AUTH 2 D.R.SPRING JRNL TITL A FRAGMENT-BASED APPROACH LEADING TO THE DISCOVERY OF A JRNL TITL 2 NOVEL BINDING SITE AND THE SELECTIVE CK2 INHIBITOR CAM4066. JRNL REF BIOORG. MED. CHEM. V. 25 3471 2017 JRNL REFN ESSN 1464-3391 JRNL PMID 28495381 JRNL DOI 10.1016/J.BMC.2017.04.037 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 48830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2482 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.68 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3040 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2013 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2874 REMARK 3 BIN R VALUE (WORKING SET) : 0.1997 REMARK 3 BIN FREE R VALUE : 0.2285 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.46 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 166 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5500 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77470 REMARK 3 B22 (A**2) : -4.89800 REMARK 3 B33 (A**2) : 4.12320 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.275 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.177 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.137 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.179 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.139 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5771 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7802 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2048 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 144 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 875 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5771 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 688 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6445 ; 0.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.92 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.39 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -6.2375 155.4440 395.9100 REMARK 3 T TENSOR REMARK 3 T11: -0.1798 T22: 0.1469 REMARK 3 T33: -0.3187 T12: 0.0261 REMARK 3 T13: 0.0405 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 3.0578 L22: 0.7378 REMARK 3 L33: 3.0860 L12: 0.1294 REMARK 3 L13: 1.1767 L23: -0.1207 REMARK 3 S TENSOR REMARK 3 S11: -0.0590 S12: -0.7889 S13: -0.0172 REMARK 3 S21: -0.1129 S22: 0.0939 S23: -0.1143 REMARK 3 S31: 0.1019 S32: -0.8915 S33: -0.0350 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 16.3890 144.5550 355.4270 REMARK 3 T TENSOR REMARK 3 T11: -0.1323 T22: -0.1477 REMARK 3 T33: -0.1490 T12: -0.0335 REMARK 3 T13: 0.0085 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.4787 L22: 0.7465 REMARK 3 L33: 1.0946 L12: 0.0504 REMARK 3 L13: 0.1143 L23: -0.2824 REMARK 3 S TENSOR REMARK 3 S11: 0.0606 S12: -0.0527 S13: -0.0152 REMARK 3 S21: 0.0389 S22: -0.0312 S23: 0.0152 REMARK 3 S31: -0.0430 S32: 0.0217 S33: -0.0293 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 3.8586 148.2760 368.3880 REMARK 3 T TENSOR REMARK 3 T11: -0.0300 T22: -0.4491 REMARK 3 T33: -0.1657 T12: -0.1298 REMARK 3 T13: -0.1595 T23: 0.1407 REMARK 3 L TENSOR REMARK 3 L11: 2.0148 L22: 2.9156 REMARK 3 L33: 7.4422 L12: 0.4567 REMARK 3 L13: 0.0966 L23: 3.8758 REMARK 3 S TENSOR REMARK 3 S11: 0.0452 S12: 0.4229 S13: -0.2684 REMARK 3 S21: 0.1916 S22: -0.0212 S23: -0.5132 REMARK 3 S31: -0.2520 S32: -0.2392 S33: -0.0240 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CTP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.14 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48911 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.033 REMARK 200 RESOLUTION RANGE LOW (A) : 83.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.73700 REMARK 200 R SYM FOR SHELL (I) : 0.73700 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3WAR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 107MM MES PH 6.5, 29% GLYCEROL REMARK 280 ETHOXYLATE, 1 M AMMONIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 166.93800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 166.93800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.53350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.42900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.53350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.42900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 166.93800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.53350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.42900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 166.93800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.53350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 34.42900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -22 REMARK 465 SER A -21 REMARK 465 MET A -20 REMARK 465 ASP A -19 REMARK 465 ILE A -18 REMARK 465 GLU A -17 REMARK 465 PHE A -16 REMARK 465 ASP A -15 REMARK 465 ASP A -14 REMARK 465 ASP A -13 REMARK 465 ALA A -12 REMARK 465 ASP A -11 REMARK 465 ASP A -10 REMARK 465 ASP A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 VAL A 328 REMARK 465 LYS A 329 REMARK 465 GLY B -22 REMARK 465 SER B -21 REMARK 465 MET B -20 REMARK 465 ASP B -19 REMARK 465 ILE B -18 REMARK 465 GLU B -17 REMARK 465 PHE B -16 REMARK 465 ASP B -15 REMARK 465 ASP B -14 REMARK 465 ASP B -13 REMARK 465 ALA B -12 REMARK 465 ASP B -11 REMARK 465 ASP B -10 REMARK 465 ASP B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 SER B -5 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 18 C ARG B 19 N -0.195 REMARK 500 HIS B 18 C ARG B 19 N -0.192 REMARK 500 ARG B 19 C PRO B 20 N -0.289 REMARK 500 ARG B 19 C PRO B 20 N -0.289 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS B 18 CA - C - N ANGL. DEV. = 13.3 DEGREES REMARK 500 HIS B 18 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 HIS B 18 O - C - N ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG B 19 O - C - N ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG B 19 O - C - N ANGL. DEV. = -12.3 DEGREES REMARK 500 PRO B 20 C - N - CA ANGL. DEV. = 21.2 DEGREES REMARK 500 PRO B 20 C - N - CA ANGL. DEV. = 21.5 DEGREES REMARK 500 PRO B 20 C - N - CD ANGL. DEV. = -21.1 DEGREES REMARK 500 PRO B 20 C - N - CD ANGL. DEV. = -21.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 156 39.94 -152.22 REMARK 500 ASP A 175 77.76 51.92 REMARK 500 ALA A 193 165.68 63.97 REMARK 500 PHE B 121 65.20 -104.81 REMARK 500 LYS B 122 -43.49 -132.32 REMARK 500 ASP B 156 37.36 -145.41 REMARK 500 ASP B 175 76.85 52.09 REMARK 500 ALA B 193 166.88 64.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 54R A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 54R B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 405 DBREF 5CTP A 2 329 UNP P68400 CSK21_HUMAN 2 329 DBREF 5CTP B 2 329 UNP P68400 CSK21_HUMAN 2 329 SEQADV 5CTP GLY A -22 UNP P68400 EXPRESSION TAG SEQADV 5CTP SER A -21 UNP P68400 EXPRESSION TAG SEQADV 5CTP MET A -20 UNP P68400 EXPRESSION TAG SEQADV 5CTP ASP A -19 UNP P68400 EXPRESSION TAG SEQADV 5CTP ILE A -18 UNP P68400 EXPRESSION TAG SEQADV 5CTP GLU A -17 UNP P68400 EXPRESSION TAG SEQADV 5CTP PHE A -16 UNP P68400 EXPRESSION TAG SEQADV 5CTP ASP A -15 UNP P68400 EXPRESSION TAG SEQADV 5CTP ASP A -14 UNP P68400 EXPRESSION TAG SEQADV 5CTP ASP A -13 UNP P68400 EXPRESSION TAG SEQADV 5CTP ALA A -12 UNP P68400 EXPRESSION TAG SEQADV 5CTP ASP A -11 UNP P68400 EXPRESSION TAG SEQADV 5CTP ASP A -10 UNP P68400 EXPRESSION TAG SEQADV 5CTP ASP A -9 UNP P68400 EXPRESSION TAG SEQADV 5CTP GLY A -8 UNP P68400 EXPRESSION TAG SEQADV 5CTP SER A -7 UNP P68400 EXPRESSION TAG SEQADV 5CTP GLY A -6 UNP P68400 EXPRESSION TAG SEQADV 5CTP SER A -5 UNP P68400 EXPRESSION TAG SEQADV 5CTP GLY A -4 UNP P68400 EXPRESSION TAG SEQADV 5CTP SER A -3 UNP P68400 EXPRESSION TAG SEQADV 5CTP GLY A -2 UNP P68400 EXPRESSION TAG SEQADV 5CTP SER A -1 UNP P68400 EXPRESSION TAG SEQADV 5CTP GLY A 0 UNP P68400 EXPRESSION TAG SEQADV 5CTP SER A 1 UNP P68400 EXPRESSION TAG SEQADV 5CTP SER A 21 UNP P68400 ARG 21 ENGINEERED MUTATION SEQADV 5CTP GLY B -22 UNP P68400 EXPRESSION TAG SEQADV 5CTP SER B -21 UNP P68400 EXPRESSION TAG SEQADV 5CTP MET B -20 UNP P68400 EXPRESSION TAG SEQADV 5CTP ASP B -19 UNP P68400 EXPRESSION TAG SEQADV 5CTP ILE B -18 UNP P68400 EXPRESSION TAG SEQADV 5CTP GLU B -17 UNP P68400 EXPRESSION TAG SEQADV 5CTP PHE B -16 UNP P68400 EXPRESSION TAG SEQADV 5CTP ASP B -15 UNP P68400 EXPRESSION TAG SEQADV 5CTP ASP B -14 UNP P68400 EXPRESSION TAG SEQADV 5CTP ASP B -13 UNP P68400 EXPRESSION TAG SEQADV 5CTP ALA B -12 UNP P68400 EXPRESSION TAG SEQADV 5CTP ASP B -11 UNP P68400 EXPRESSION TAG SEQADV 5CTP ASP B -10 UNP P68400 EXPRESSION TAG SEQADV 5CTP ASP B -9 UNP P68400 EXPRESSION TAG SEQADV 5CTP GLY B -8 UNP P68400 EXPRESSION TAG SEQADV 5CTP SER B -7 UNP P68400 EXPRESSION TAG SEQADV 5CTP GLY B -6 UNP P68400 EXPRESSION TAG SEQADV 5CTP SER B -5 UNP P68400 EXPRESSION TAG SEQADV 5CTP GLY B -4 UNP P68400 EXPRESSION TAG SEQADV 5CTP SER B -3 UNP P68400 EXPRESSION TAG SEQADV 5CTP GLY B -2 UNP P68400 EXPRESSION TAG SEQADV 5CTP SER B -1 UNP P68400 EXPRESSION TAG SEQADV 5CTP GLY B 0 UNP P68400 EXPRESSION TAG SEQADV 5CTP SER B 1 UNP P68400 EXPRESSION TAG SEQADV 5CTP SER B 21 UNP P68400 ARG 21 ENGINEERED MUTATION SEQRES 1 A 352 GLY SER MET ASP ILE GLU PHE ASP ASP ASP ALA ASP ASP SEQRES 2 A 352 ASP GLY SER GLY SER GLY SER GLY SER GLY SER SER GLY SEQRES 3 A 352 PRO VAL PRO SER ARG ALA ARG VAL TYR THR ASP VAL ASN SEQRES 4 A 352 THR HIS ARG PRO SER GLU TYR TRP ASP TYR GLU SER HIS SEQRES 5 A 352 VAL VAL GLU TRP GLY ASN GLN ASP ASP TYR GLN LEU VAL SEQRES 6 A 352 ARG LYS LEU GLY ARG GLY LYS TYR SER GLU VAL PHE GLU SEQRES 7 A 352 ALA ILE ASN ILE THR ASN ASN GLU LYS VAL VAL VAL LYS SEQRES 8 A 352 ILE LEU LYS PRO VAL LYS LYS LYS LYS ILE LYS ARG GLU SEQRES 9 A 352 ILE LYS ILE LEU GLU ASN LEU ARG GLY GLY PRO ASN ILE SEQRES 10 A 352 ILE THR LEU ALA ASP ILE VAL LYS ASP PRO VAL SER ARG SEQRES 11 A 352 THR PRO ALA LEU VAL PHE GLU HIS VAL ASN ASN THR ASP SEQRES 12 A 352 PHE LYS GLN LEU TYR GLN THR LEU THR ASP TYR ASP ILE SEQRES 13 A 352 ARG PHE TYR MET TYR GLU ILE LEU LYS ALA LEU ASP TYR SEQRES 14 A 352 CYS HIS SER MET GLY ILE MET HIS ARG ASP VAL LYS PRO SEQRES 15 A 352 HIS ASN VAL MET ILE ASP HIS GLU HIS ARG LYS LEU ARG SEQRES 16 A 352 LEU ILE ASP TRP GLY LEU ALA GLU PHE TYR HIS PRO GLY SEQRES 17 A 352 GLN GLU TYR ASN VAL ARG VAL ALA SER ARG TYR PHE LYS SEQRES 18 A 352 GLY PRO GLU LEU LEU VAL ASP TYR GLN MET TYR ASP TYR SEQRES 19 A 352 SER LEU ASP MET TRP SER LEU GLY CYS MET LEU ALA SER SEQRES 20 A 352 MET ILE PHE ARG LYS GLU PRO PHE PHE HIS GLY HIS ASP SEQRES 21 A 352 ASN TYR ASP GLN LEU VAL ARG ILE ALA LYS VAL LEU GLY SEQRES 22 A 352 THR GLU ASP LEU TYR ASP TYR ILE ASP LYS TYR ASN ILE SEQRES 23 A 352 GLU LEU ASP PRO ARG PHE ASN ASP ILE LEU GLY ARG HIS SEQRES 24 A 352 SER ARG LYS ARG TRP GLU ARG PHE VAL HIS SER GLU ASN SEQRES 25 A 352 GLN HIS LEU VAL SER PRO GLU ALA LEU ASP PHE LEU ASP SEQRES 26 A 352 LYS LEU LEU ARG TYR ASP HIS GLN SER ARG LEU THR ALA SEQRES 27 A 352 ARG GLU ALA MET GLU HIS PRO TYR PHE TYR THR VAL VAL SEQRES 28 A 352 LYS SEQRES 1 B 352 GLY SER MET ASP ILE GLU PHE ASP ASP ASP ALA ASP ASP SEQRES 2 B 352 ASP GLY SER GLY SER GLY SER GLY SER GLY SER SER GLY SEQRES 3 B 352 PRO VAL PRO SER ARG ALA ARG VAL TYR THR ASP VAL ASN SEQRES 4 B 352 THR HIS ARG PRO SER GLU TYR TRP ASP TYR GLU SER HIS SEQRES 5 B 352 VAL VAL GLU TRP GLY ASN GLN ASP ASP TYR GLN LEU VAL SEQRES 6 B 352 ARG LYS LEU GLY ARG GLY LYS TYR SER GLU VAL PHE GLU SEQRES 7 B 352 ALA ILE ASN ILE THR ASN ASN GLU LYS VAL VAL VAL LYS SEQRES 8 B 352 ILE LEU LYS PRO VAL LYS LYS LYS LYS ILE LYS ARG GLU SEQRES 9 B 352 ILE LYS ILE LEU GLU ASN LEU ARG GLY GLY PRO ASN ILE SEQRES 10 B 352 ILE THR LEU ALA ASP ILE VAL LYS ASP PRO VAL SER ARG SEQRES 11 B 352 THR PRO ALA LEU VAL PHE GLU HIS VAL ASN ASN THR ASP SEQRES 12 B 352 PHE LYS GLN LEU TYR GLN THR LEU THR ASP TYR ASP ILE SEQRES 13 B 352 ARG PHE TYR MET TYR GLU ILE LEU LYS ALA LEU ASP TYR SEQRES 14 B 352 CYS HIS SER MET GLY ILE MET HIS ARG ASP VAL LYS PRO SEQRES 15 B 352 HIS ASN VAL MET ILE ASP HIS GLU HIS ARG LYS LEU ARG SEQRES 16 B 352 LEU ILE ASP TRP GLY LEU ALA GLU PHE TYR HIS PRO GLY SEQRES 17 B 352 GLN GLU TYR ASN VAL ARG VAL ALA SER ARG TYR PHE LYS SEQRES 18 B 352 GLY PRO GLU LEU LEU VAL ASP TYR GLN MET TYR ASP TYR SEQRES 19 B 352 SER LEU ASP MET TRP SER LEU GLY CYS MET LEU ALA SER SEQRES 20 B 352 MET ILE PHE ARG LYS GLU PRO PHE PHE HIS GLY HIS ASP SEQRES 21 B 352 ASN TYR ASP GLN LEU VAL ARG ILE ALA LYS VAL LEU GLY SEQRES 22 B 352 THR GLU ASP LEU TYR ASP TYR ILE ASP LYS TYR ASN ILE SEQRES 23 B 352 GLU LEU ASP PRO ARG PHE ASN ASP ILE LEU GLY ARG HIS SEQRES 24 B 352 SER ARG LYS ARG TRP GLU ARG PHE VAL HIS SER GLU ASN SEQRES 25 B 352 GLN HIS LEU VAL SER PRO GLU ALA LEU ASP PHE LEU ASP SEQRES 26 B 352 LYS LEU LEU ARG TYR ASP HIS GLN SER ARG LEU THR ALA SEQRES 27 B 352 ARG GLU ALA MET GLU HIS PRO TYR PHE TYR THR VAL VAL SEQRES 28 B 352 LYS HET ACT A 401 4 HET 54R A 402 22 HET ACT B 401 4 HET ACT B 402 4 HET ACT B 403 4 HET 54R B 404 44 HET PO4 B 405 5 HETNAM ACT ACETATE ION HETNAM 54R N-(3-{[(2-CHLOROBIPHENYL-4-YL)METHYL]AMINO}PROPYL) HETNAM 2 54R ACETAMIDE HETNAM PO4 PHOSPHATE ION FORMUL 3 ACT 4(C2 H3 O2 1-) FORMUL 4 54R 2(C18 H21 CL N2 O) FORMUL 9 PO4 O4 P 3- FORMUL 10 HOH *212(H2 O) HELIX 1 AA1 PRO A 20 ASP A 25 1 6 HELIX 2 AA2 TYR A 26 HIS A 29 5 4 HELIX 3 AA3 LYS A 74 ARG A 89 1 16 HELIX 4 AA4 ASP A 120 GLN A 126 1 7 HELIX 5 AA5 THR A 129 MET A 150 1 22 HELIX 6 AA6 LYS A 158 HIS A 160 5 3 HELIX 7 AA7 HIS A 166 ARG A 169 5 4 HELIX 8 AA8 ASP A 175 ALA A 179 5 5 HELIX 9 AA9 SER A 194 LYS A 198 5 5 HELIX 10 AB1 GLY A 199 VAL A 204 1 6 HELIX 11 AB2 TYR A 211 ARG A 228 1 18 HELIX 12 AB3 ASP A 237 GLY A 250 1 14 HELIX 13 AB4 THR A 251 ASN A 262 1 12 HELIX 14 AB5 ASP A 266 ASN A 270 5 5 HELIX 15 AB6 ARG A 280 VAL A 285 5 6 HELIX 16 AB7 SER A 294 LEU A 305 1 12 HELIX 17 AB8 ASP A 308 ARG A 312 5 5 HELIX 18 AB9 THR A 314 GLU A 320 1 7 HELIX 19 AC1 HIS A 321 TYR A 325 5 5 HELIX 20 AC2 PRO B 20 ASP B 25 1 6 HELIX 21 AC3 TYR B 26 HIS B 29 5 4 HELIX 22 AC4 LYS B 74 ARG B 89 1 16 HELIX 23 AC5 THR B 129 MET B 150 1 22 HELIX 24 AC6 LYS B 158 HIS B 160 5 3 HELIX 25 AC7 ASP B 175 ALA B 179 5 5 HELIX 26 AC8 SER B 194 LYS B 198 5 5 HELIX 27 AC9 GLY B 199 VAL B 204 1 6 HELIX 28 AD1 TYR B 211 ARG B 228 1 18 HELIX 29 AD2 ASP B 237 GLY B 250 1 14 HELIX 30 AD3 THR B 251 ASN B 262 1 12 HELIX 31 AD4 ASP B 266 ASN B 270 5 5 HELIX 32 AD5 ARG B 280 VAL B 285 5 6 HELIX 33 AD6 SER B 294 LEU B 305 1 12 HELIX 34 AD7 ASP B 308 ARG B 312 5 5 HELIX 35 AD8 THR B 314 GLU B 320 1 7 HELIX 36 AD9 HIS B 321 TYR B 325 5 5 SHEET 1 AA1 6 GLY A 34 ASN A 35 0 SHEET 2 AA1 6 LEU A 97 LYS A 102 1 O ILE A 100 N GLY A 34 SHEET 3 AA1 6 PRO A 109 GLU A 114 -1 O VAL A 112 N ASP A 99 SHEET 4 AA1 6 GLU A 63 LEU A 70 -1 N VAL A 66 O PHE A 113 SHEET 5 AA1 6 SER A 51 ASN A 58 -1 N GLU A 52 O ILE A 69 SHEET 6 AA1 6 TYR A 39 ARG A 47 -1 N VAL A 42 O GLU A 55 SHEET 1 AA2 2 ILE A 152 MET A 153 0 SHEET 2 AA2 2 GLU A 180 PHE A 181 -1 O GLU A 180 N MET A 153 SHEET 1 AA3 2 VAL A 162 ASP A 165 0 SHEET 2 AA3 2 LYS A 170 LEU A 173 -1 O ARG A 172 N MET A 163 SHEET 1 AA4 6 GLY B 34 ASN B 35 0 SHEET 2 AA4 6 LEU B 97 LYS B 102 1 O ILE B 100 N GLY B 34 SHEET 3 AA4 6 PRO B 109 GLU B 114 -1 O VAL B 112 N ASP B 99 SHEET 4 AA4 6 GLU B 63 LEU B 70 -1 N VAL B 66 O PHE B 113 SHEET 5 AA4 6 SER B 51 ASN B 58 -1 N ASN B 58 O GLU B 63 SHEET 6 AA4 6 TYR B 39 ARG B 47 -1 N LEU B 45 O VAL B 53 SHEET 1 AA5 2 ILE B 152 MET B 153 0 SHEET 2 AA5 2 GLU B 180 PHE B 181 -1 O GLU B 180 N MET B 153 SHEET 1 AA6 2 VAL B 162 ASP B 165 0 SHEET 2 AA6 2 LYS B 170 LEU B 173 -1 O ARG B 172 N MET B 163 CISPEP 1 GLU A 230 PRO A 231 0 -4.69 CISPEP 2 GLU B 230 PRO B 231 0 -7.90 SITE 1 AC1 4 LYS A 68 PHE A 113 ASP A 175 HOH A 501 SITE 1 AC2 8 PHE A 121 PRO A 159 HIS A 160 VAL A 162 SITE 2 AC2 8 MET A 163 ILE A 164 MET A 221 MET A 225 SITE 1 AC3 6 LYS B 68 PHE B 113 ILE B 174 ASP B 175 SITE 2 AC3 6 HOH B 510 HOH B 514 SITE 1 AC4 4 ARG B 80 ARG B 155 ASN B 189 HOH B 587 SITE 1 AC5 1 ARG B 244 SITE 1 AC6 11 ASN B 118 LEU B 128 MET B 137 ILE B 140 SITE 2 AC6 11 PRO B 159 HIS B 160 VAL B 162 MET B 163 SITE 3 AC6 11 MET B 221 MET B 225 HOH B 502 SITE 1 AC7 5 HIS B 276 SER B 277 LYS B 279 HOH B 526 SITE 2 AC7 5 HOH B 574 CRYST1 65.067 68.858 333.876 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015369 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002995 0.00000