HEADER TRANSCRIPTION REGULATOR 27-JUL-15 5CVI TITLE STRUCTURE OF THE MANGANESE REGULATOR SLOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SLOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS; SOURCE 3 ORGANISM_TAXID: 1309; SOURCE 4 GENE: SLOR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSMT3 KEYWDS TRANSCRIPTION REGULATOR, MANGANESE REGULATOR, DTXR FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR D.NYE,A.GLASFELD REVDAT 4 06-NOV-24 5CVI 1 LINK REVDAT 3 26-FEB-20 5CVI 1 REMARK REVDAT 2 22-NOV-17 5CVI 1 REMARK REVDAT 1 12-AUG-15 5CVI 0 JRNL AUTH G.SPATAFORA,J.CORBETT,L.P.CORNACCHIONE,W.C.DALY, JRNL AUTH 2 D.GALAN-DONLO,M.WYSOTA,P.TIVNAN,J.COLLINS,D.NYE,T.LEVITZ, JRNL AUTH 3 W.A.BREYER,A.GLASFELD JRNL TITL SLOR STRUCTURE AND DNA BINDING STUDIES INFORM THE SLOR-SRE JRNL TITL 2 INTERACTION IN STREPTOCOCCUS MUTANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.2457 - 5.8304 1.00 2771 122 0.1973 0.2024 REMARK 3 2 5.8304 - 4.6283 1.00 2704 165 0.1829 0.2609 REMARK 3 3 4.6283 - 4.0434 1.00 2738 134 0.1744 0.2308 REMARK 3 4 4.0434 - 3.6738 1.00 2743 155 0.1845 0.2402 REMARK 3 5 3.6738 - 3.4105 1.00 2710 154 0.2097 0.2984 REMARK 3 6 3.4105 - 3.2094 1.00 2754 123 0.2198 0.2824 REMARK 3 7 3.2094 - 3.0487 1.00 2742 134 0.2249 0.2893 REMARK 3 8 3.0487 - 2.9160 1.00 2752 157 0.2345 0.3075 REMARK 3 9 2.9160 - 2.8037 0.97 2632 163 0.2621 0.3419 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3539 REMARK 3 ANGLE : 0.565 4766 REMARK 3 CHIRALITY : 0.044 539 REMARK 3 PLANARITY : 0.001 604 REMARK 3 DIHEDRAL : 13.323 1366 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 3:67) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8471 -0.6571 124.8745 REMARK 3 T TENSOR REMARK 3 T11: 0.3606 T22: 0.3853 REMARK 3 T33: 0.3448 T12: -0.0448 REMARK 3 T13: 0.0690 T23: -0.1325 REMARK 3 L TENSOR REMARK 3 L11: 2.6002 L22: 2.8378 REMARK 3 L33: 2.3819 L12: 1.6399 REMARK 3 L13: -0.2127 L23: 0.8423 REMARK 3 S TENSOR REMARK 3 S11: 0.2839 S12: -0.5755 S13: 0.5839 REMARK 3 S21: 0.0675 S22: -0.2606 S23: 0.2406 REMARK 3 S31: -0.7061 S32: -0.0640 S33: 0.0282 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 68:214) REMARK 3 ORIGIN FOR THE GROUP (A): 50.3958 -4.2181 125.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.1952 T22: 0.2256 REMARK 3 T33: 0.1526 T12: -0.0775 REMARK 3 T13: -0.0597 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 0.0978 L22: 1.1091 REMARK 3 L33: 3.5607 L12: -0.3144 REMARK 3 L13: -0.2768 L23: 0.4419 REMARK 3 S TENSOR REMARK 3 S11: 0.1817 S12: -0.1969 S13: -0.0543 REMARK 3 S21: 0.3302 S22: -0.0288 S23: -0.0522 REMARK 3 S31: -0.1347 S32: 0.0938 S33: -0.1136 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 1:70) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8501 6.9944 83.8039 REMARK 3 T TENSOR REMARK 3 T11: 0.3227 T22: 0.2308 REMARK 3 T33: 0.2074 T12: 0.0027 REMARK 3 T13: -0.0202 T23: 0.0601 REMARK 3 L TENSOR REMARK 3 L11: 5.7866 L22: 2.3236 REMARK 3 L33: 1.8034 L12: -0.0642 REMARK 3 L13: 1.8848 L23: 0.7980 REMARK 3 S TENSOR REMARK 3 S11: 0.3603 S12: 0.1172 S13: -0.2233 REMARK 3 S21: -0.0419 S22: -0.1411 S23: -0.1111 REMARK 3 S31: 0.1343 S32: -0.1473 S33: -0.1896 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 71:215) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6211 -7.5742 82.3768 REMARK 3 T TENSOR REMARK 3 T11: 0.1748 T22: 0.1220 REMARK 3 T33: 0.1662 T12: -0.0160 REMARK 3 T13: -0.0091 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.8370 L22: 1.7565 REMARK 3 L33: 4.3716 L12: 0.5048 REMARK 3 L13: 0.3048 L23: 2.2128 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: 0.0813 S13: -0.0109 REMARK 3 S21: -0.3315 S22: 0.0825 S23: -0.0887 REMARK 3 S31: -0.2794 S32: 0.1204 S33: -0.1514 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212234. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25853 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 59.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 3350, 40 MM LITHIUM SULFATE, 1 REMARK 280 MM ZINC CHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 149.39000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.21600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.21600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.69500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.21600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.21600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 224.08500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.21600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.21600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.69500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.21600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.21600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 224.08500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 149.39000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -219.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -229.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 30.21600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 30.21600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 224.08500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 LYS A 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 172 56.39 36.14 REMARK 500 TYR B 119 61.93 61.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 GLU A 99 OE2 90.7 REMARK 620 3 GLU A 102 OE2 133.4 116.0 REMARK 620 4 HIS A 103 NE2 109.1 102.0 102.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 76 NE2 REMARK 620 2 HIS A 95 ND1 121.1 REMARK 620 3 ASP A 160 OD2 105.8 120.2 REMARK 620 4 HOH A 401 O 104.7 106.0 94.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 CYS A 123 SG 107.1 REMARK 620 3 HIS A 125 ND1 105.2 110.3 REMARK 620 4 HOH A 411 O 120.6 109.5 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD1 REMARK 620 2 GLU A 111 OE2 95.1 REMARK 620 3 HIS A 132 ND1 97.6 104.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 172 NE2 REMARK 620 2 GLU A 198 OE1 134.6 REMARK 620 3 GLU A 198 OE2 97.1 58.7 REMARK 620 4 ASP B 49 OD1 59.8 126.3 152.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 7 OD1 REMARK 620 2 GLU B 99 OE2 95.6 REMARK 620 3 GLU B 102 OE2 110.4 105.2 REMARK 620 4 HIS B 103 NE2 111.9 127.1 105.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 76 NE2 REMARK 620 2 HIS B 95 ND1 114.6 REMARK 620 3 ASP B 160 OD2 94.1 124.4 REMARK 620 4 HOH B 405 O 106.4 120.6 91.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 80 OE2 REMARK 620 2 CYS B 123 SG 108.8 REMARK 620 3 HIS B 125 ND1 105.7 130.4 REMARK 620 4 HOH B 413 O 115.7 104.8 90.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 DBREF 5CVI A 2 215 UNP Q9KIJ2 Q9KIJ2_STRMG 2 215 DBREF 5CVI B 2 215 UNP Q9KIJ2 Q9KIJ2_STRMG 2 215 SEQADV 5CVI MSE A 1 UNP Q9KIJ2 INITIATING METHIONINE SEQADV 5CVI MSE B 1 UNP Q9KIJ2 INITIATING METHIONINE SEQRES 1 A 215 MSE THR PRO ASN LYS GLU ASP TYR LEU LYS ILE ILE TYR SEQRES 2 A 215 GLU LEU SER GLU ARG ASP GLU LYS ILE SER ASN LYS GLN SEQRES 3 A 215 ILE ALA GLU LYS MSE SER VAL SER ALA PRO ALA VAL SER SEQRES 4 A 215 GLU MSE VAL LYS LYS LEU LEU LEU GLU ASP LEU VAL LEU SEQRES 5 A 215 LYS ASP LYS GLN ALA GLY TYR LEU LEU THR LYS LYS GLY SEQRES 6 A 215 GLN ILE LEU ALA SER SER LEU TYR ARG LYS HIS ARG LEU SEQRES 7 A 215 ILE GLU VAL PHE LEU MSE ASN HIS LEU ASN TYR THR ALA SEQRES 8 A 215 ASP GLU ILE HIS GLU GLU ALA GLU VAL LEU GLU HIS THR SEQRES 9 A 215 VAL SER ASP VAL PHE VAL GLU ARG LEU ASP LYS PHE LEU SEQRES 10 A 215 ASN TYR PRO LYS VAL CYS PRO HIS GLY GLY THR ILE PRO SEQRES 11 A 215 GLN HIS GLY GLN PRO LEU VAL GLU ARG TYR ARG THR THR SEQRES 12 A 215 LEU LYS GLY VAL THR GLU MSE GLY VAL TYR LEU LEU LYS SEQRES 13 A 215 ARG VAL GLN ASP ASN PHE GLN LEU LEU LYS TYR MSE GLU SEQRES 14 A 215 GLN HIS HIS LEU LYS ILE GLY ASP GLU LEU ARG LEU LEU SEQRES 15 A 215 GLU TYR ASP ALA PHE ALA GLY ALA TYR THR ILE GLU LYS SEQRES 16 A 215 ASP GLY GLU GLN LEU GLN VAL THR SER ALA VAL ALA SER SEQRES 17 A 215 GLN ILE TYR ILE GLU LYS LYS SEQRES 1 B 215 MSE THR PRO ASN LYS GLU ASP TYR LEU LYS ILE ILE TYR SEQRES 2 B 215 GLU LEU SER GLU ARG ASP GLU LYS ILE SER ASN LYS GLN SEQRES 3 B 215 ILE ALA GLU LYS MSE SER VAL SER ALA PRO ALA VAL SER SEQRES 4 B 215 GLU MSE VAL LYS LYS LEU LEU LEU GLU ASP LEU VAL LEU SEQRES 5 B 215 LYS ASP LYS GLN ALA GLY TYR LEU LEU THR LYS LYS GLY SEQRES 6 B 215 GLN ILE LEU ALA SER SER LEU TYR ARG LYS HIS ARG LEU SEQRES 7 B 215 ILE GLU VAL PHE LEU MSE ASN HIS LEU ASN TYR THR ALA SEQRES 8 B 215 ASP GLU ILE HIS GLU GLU ALA GLU VAL LEU GLU HIS THR SEQRES 9 B 215 VAL SER ASP VAL PHE VAL GLU ARG LEU ASP LYS PHE LEU SEQRES 10 B 215 ASN TYR PRO LYS VAL CYS PRO HIS GLY GLY THR ILE PRO SEQRES 11 B 215 GLN HIS GLY GLN PRO LEU VAL GLU ARG TYR ARG THR THR SEQRES 12 B 215 LEU LYS GLY VAL THR GLU MSE GLY VAL TYR LEU LEU LYS SEQRES 13 B 215 ARG VAL GLN ASP ASN PHE GLN LEU LEU LYS TYR MSE GLU SEQRES 14 B 215 GLN HIS HIS LEU LYS ILE GLY ASP GLU LEU ARG LEU LEU SEQRES 15 B 215 GLU TYR ASP ALA PHE ALA GLY ALA TYR THR ILE GLU LYS SEQRES 16 B 215 ASP GLY GLU GLN LEU GLN VAL THR SER ALA VAL ALA SER SEQRES 17 B 215 GLN ILE TYR ILE GLU LYS LYS MODRES 5CVI MSE A 31 MET MODIFIED RESIDUE MODRES 5CVI MSE A 41 MET MODIFIED RESIDUE MODRES 5CVI MSE A 84 MET MODIFIED RESIDUE MODRES 5CVI MSE A 150 MET MODIFIED RESIDUE MODRES 5CVI MSE A 168 MET MODIFIED RESIDUE MODRES 5CVI MSE B 31 MET MODIFIED RESIDUE MODRES 5CVI MSE B 41 MET MODIFIED RESIDUE MODRES 5CVI MSE B 84 MET MODIFIED RESIDUE MODRES 5CVI MSE B 150 MET MODIFIED RESIDUE MODRES 5CVI MSE B 168 MET MODIFIED RESIDUE HET MSE A 31 8 HET MSE A 41 8 HET MSE A 84 8 HET MSE A 150 8 HET MSE A 168 8 HET MSE B 1 8 HET MSE B 31 8 HET MSE B 41 8 HET MSE B 84 8 HET MSE B 150 8 HET MSE B 168 8 HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET ZN A 305 1 HET ZN B 301 1 HET ZN B 302 1 HET ZN B 303 1 HET EDO B 304 10 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 ZN 8(ZN 2+) FORMUL 11 EDO C2 H6 O2 FORMUL 12 HOH *32(H2 O) HELIX 1 AA1 ASN A 4 SER A 16 1 13 HELIX 2 AA2 SER A 23 MSE A 31 1 9 HELIX 3 AA3 SER A 34 GLU A 48 1 15 HELIX 4 AA4 THR A 62 HIS A 86 1 25 HELIX 5 AA5 GLU A 93 GLU A 102 1 10 HELIX 6 AA6 SER A 106 LEU A 117 1 12 HELIX 7 AA7 ASN A 161 GLN A 170 1 10 HELIX 8 AA8 SER A 204 SER A 208 1 5 HELIX 9 AA9 GLU B 6 ASP B 19 1 14 HELIX 10 AB1 SER B 23 MSE B 31 1 9 HELIX 11 AB2 SER B 34 GLU B 48 1 15 HELIX 12 AB3 THR B 62 HIS B 86 1 25 HELIX 13 AB4 THR B 90 GLU B 102 1 13 HELIX 14 AB5 SER B 106 LEU B 117 1 12 HELIX 15 AB6 ASN B 161 HIS B 171 1 11 HELIX 16 AB7 SER B 204 SER B 208 1 5 SHEET 1 AA1 2 VAL A 51 ASP A 54 0 SHEET 2 AA1 2 GLY A 58 LEU A 61 -1 O GLY A 58 N ASP A 54 SHEET 1 AA2 5 GLU A 198 THR A 203 0 SHEET 2 AA2 5 ALA A 190 LYS A 195 -1 N TYR A 191 O VAL A 202 SHEET 3 AA2 5 GLU A 178 ASP A 185 -1 N ASP A 185 O ALA A 190 SHEET 4 AA2 5 GLY A 151 VAL A 158 -1 N TYR A 153 O LEU A 179 SHEET 5 AA2 5 ILE A 210 GLU A 213 -1 O GLU A 213 N LEU A 154 SHEET 1 AA3 2 VAL B 51 ASP B 54 0 SHEET 2 AA3 2 GLY B 58 LEU B 61 -1 O GLY B 58 N ASP B 54 SHEET 1 AA4 5 GLU B 198 THR B 203 0 SHEET 2 AA4 5 ALA B 190 LYS B 195 -1 N TYR B 191 O VAL B 202 SHEET 3 AA4 5 GLU B 178 ASP B 185 -1 N ARG B 180 O GLU B 194 SHEET 4 AA4 5 GLY B 151 VAL B 158 -1 N GLY B 151 O LEU B 181 SHEET 5 AA4 5 ILE B 210 LYS B 214 -1 O GLU B 213 N LEU B 154 LINK C LYS A 30 N MSE A 31 1555 1555 1.33 LINK C MSE A 31 N SER A 32 1555 1555 1.33 LINK C GLU A 40 N MSE A 41 1555 1555 1.33 LINK C MSE A 41 N VAL A 42 1555 1555 1.33 LINK C LEU A 83 N MSE A 84 1555 1555 1.33 LINK C MSE A 84 N ASN A 85 1555 1555 1.33 LINK C GLU A 149 N MSE A 150 1555 1555 1.33 LINK C MSE A 150 N GLY A 151 1555 1555 1.33 LINK C TYR A 167 N MSE A 168 1555 1555 1.33 LINK C MSE A 168 N GLU A 169 1555 1555 1.33 LINK C MSE B 1 N THR B 2 1555 1555 1.33 LINK C LYS B 30 N MSE B 31 1555 1555 1.33 LINK C MSE B 31 N SER B 32 1555 1555 1.33 LINK C GLU B 40 N MSE B 41 1555 1555 1.33 LINK C MSE B 41 N VAL B 42 1555 1555 1.33 LINK C LEU B 83 N MSE B 84 1555 1555 1.33 LINK C MSE B 84 N ASN B 85 1555 1555 1.33 LINK C GLU B 149 N MSE B 150 1555 1555 1.33 LINK C MSE B 150 N GLY B 151 1555 1555 1.33 LINK C TYR B 167 N MSE B 168 1555 1555 1.33 LINK C MSE B 168 N GLU B 169 1555 1555 1.33 LINK OD1 ASP A 7 ZN ZN A 301 1555 1555 2.01 LINK NE2 HIS A 76 ZN ZN A 303 1555 1555 2.04 LINK OE2 GLU A 80 ZN ZN A 302 1555 1555 2.02 LINK ND1 HIS A 95 ZN ZN A 303 1555 1555 2.02 LINK OE2 GLU A 99 ZN ZN A 301 1555 1555 1.95 LINK OE2 GLU A 102 ZN ZN A 301 1555 1555 1.99 LINK NE2 HIS A 103 ZN ZN A 301 1555 1555 2.03 LINK OD1BASP A 107 ZN ZN A 304 1555 1555 1.98 LINK OE2 GLU A 111 ZN ZN A 304 1555 1555 2.31 LINK SG CYS A 123 ZN ZN A 302 1555 1555 2.29 LINK ND1 HIS A 125 ZN ZN A 302 1555 1555 2.11 LINK ND1 HIS A 132 ZN ZN A 304 1555 1555 2.25 LINK OD2 ASP A 160 ZN ZN A 303 1555 1555 1.97 LINK NE2 HIS A 172 ZN ZN A 305 1555 1555 1.94 LINK OE1 GLU A 198 ZN ZN A 305 1555 1555 2.06 LINK OE2 GLU A 198 ZN ZN A 305 1555 1555 2.39 LINK ZN ZN A 302 O HOH A 411 1555 1555 2.55 LINK ZN ZN A 303 O HOH A 401 1555 1555 2.10 LINK ZN ZN A 305 OD1 ASP B 49 6455 1555 2.06 LINK OD1 ASP B 7 ZN ZN B 301 1555 1555 2.00 LINK NE2 HIS B 76 ZN ZN B 303 1555 1555 2.16 LINK OE2 GLU B 80 ZN ZN B 302 1555 1555 1.87 LINK ND1 HIS B 95 ZN ZN B 303 1555 1555 2.01 LINK OE2 GLU B 99 ZN ZN B 301 1555 1555 1.85 LINK OE2 GLU B 102 ZN ZN B 301 1555 1555 1.98 LINK NE2 HIS B 103 ZN ZN B 301 1555 1555 2.15 LINK SG CYS B 123 ZN ZN B 302 1555 1555 2.38 LINK ND1 HIS B 125 ZN ZN B 302 1555 1555 2.17 LINK OD2 ASP B 160 ZN ZN B 303 1555 1555 1.94 LINK ZN ZN B 302 O HOH B 413 1555 1555 2.49 LINK ZN ZN B 303 O HOH B 405 1555 1555 2.13 SITE 1 AC1 4 ASP A 7 GLU A 99 GLU A 102 HIS A 103 SITE 1 AC2 4 GLU A 80 CYS A 123 HIS A 125 HOH A 411 SITE 1 AC3 5 HIS A 76 GLU A 80 HIS A 95 ASP A 160 SITE 2 AC3 5 HOH A 401 SITE 1 AC4 4 ASP A 107 GLU A 111 HIS A 132 HOH A 409 SITE 1 AC5 3 HIS A 172 GLU A 198 ASP B 49 SITE 1 AC6 4 ASP B 7 GLU B 99 GLU B 102 HIS B 103 SITE 1 AC7 4 GLU B 80 CYS B 123 HIS B 125 HOH B 413 SITE 1 AC8 4 HIS B 76 HIS B 95 ASP B 160 HOH B 405 SITE 1 AC9 2 ASN A 88 LYS B 115 CRYST1 60.432 60.432 298.780 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016548 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016548 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003347 0.00000