HEADER PROTEIN BINDING 27-JUL-15 5CVL TITLE WDR48 (UAF-1), RESIDUES 2-580 COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 48; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-580; COMPND 5 SYNONYM: USP1-ASSOCIATED FACTOR 1,WD REPEAT ENDOSOMAL PROTEIN,P80; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR48, KIAA1449, UAF1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS WDR48, UAF1, WD-REPEAT, USP, DEUBIQUITINASE, DUB, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.F.HARRIS,J.YIN REVDAT 3 06-MAR-24 5CVL 1 JRNL REMARK LINK REVDAT 2 11-NOV-15 5CVL 1 JRNL REVDAT 1 07-OCT-15 5CVL 0 JRNL AUTH J.YIN,A.J.SCHOEFFLER,K.WICKLIFFE,K.NEWTON,M.A.STAROVASNIK, JRNL AUTH 2 E.C.DUEBER,S.F.HARRIS JRNL TITL STRUCTURAL INSIGHTS INTO WD-REPEAT 48 ACTIVATION OF JRNL TITL 2 UBIQUITIN-SPECIFIC PROTEASE 46. JRNL REF STRUCTURE V. 23 2043 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26388029 JRNL DOI 10.1016/J.STR.2015.08.010 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.470 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2812 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2673 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2573 REMARK 3 BIN R VALUE (WORKING SET) : 0.2605 REMARK 3 BIN FREE R VALUE : 0.3404 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 239 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4138 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 81.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.65360 REMARK 3 B22 (A**2) : 6.65360 REMARK 3 B33 (A**2) : -13.30720 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.378 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.475 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.297 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.455 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.297 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4232 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5744 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1473 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 104 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 604 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4232 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 4 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 561 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4806 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.24 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.22 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.76 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212248. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.026382 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44419 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.82700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.72 M SODIUM PHOSPHATE, 0.72 M REMARK 280 POTASSIUM PHOSPHATE, 90 MM HEPES PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.76000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 69.76000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.55450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 69.76000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.77725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 69.76000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 176.33175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 69.76000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 176.33175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.76000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.77725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 69.76000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 69.76000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.55450 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 69.76000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 69.76000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 117.55450 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 69.76000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 176.33175 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 69.76000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 58.77725 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.76000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 58.77725 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 69.76000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 176.33175 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 69.76000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 69.76000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 117.55450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 832 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 GLY A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 ARG A 6 REMARK 465 GLN A 7 REMARK 465 ASN A 8 REMARK 465 THR A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 ASP A 337 REMARK 465 TYR A 338 REMARK 465 ASP A 339 REMARK 465 ASN A 340 REMARK 465 ASP A 341 REMARK 465 CYS A 342 REMARK 465 THR A 343 REMARK 465 ASN A 344 REMARK 465 GLU A 484 REMARK 465 GLU A 485 REMARK 465 GLU A 486 REMARK 465 ASN A 487 REMARK 465 GLU A 488 REMARK 465 VAL A 489 REMARK 465 ASN A 490 REMARK 465 HIS A 491 REMARK 465 VAL A 492 REMARK 465 ASN A 493 REMARK 465 GLY A 494 REMARK 465 GLU A 495 REMARK 465 GLN A 496 REMARK 465 GLU A 497 REMARK 465 ASN A 498 REMARK 465 ARG A 499 REMARK 465 VAL A 500 REMARK 465 GLN A 501 REMARK 465 LYS A 564 REMARK 465 ILE A 565 REMARK 465 PRO A 566 REMARK 465 PHE A 567 REMARK 465 TYR A 568 REMARK 465 LEU A 569 REMARK 465 GLN A 570 REMARK 465 PRO A 571 REMARK 465 HIS A 572 REMARK 465 ALA A 573 REMARK 465 SER A 574 REMARK 465 SER A 575 REMARK 465 GLY A 576 REMARK 465 ALA A 577 REMARK 465 LYS A 578 REMARK 465 THR A 579 REMARK 465 LEU A 580 REMARK 465 GLY A 581 REMARK 465 ASN A 582 REMARK 465 SER A 583 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 61 -27.92 87.68 REMARK 500 ILE A 68 -63.62 -107.67 REMARK 500 LYS A 129 1.61 -67.90 REMARK 500 ALA A 151 71.70 -116.51 REMARK 500 LEU A 152 -98.20 -122.54 REMARK 500 ALA A 154 -126.92 171.13 REMARK 500 LYS A 190 -25.62 66.89 REMARK 500 SER A 230 -2.59 -57.96 REMARK 500 CYS A 244 95.38 -63.31 REMARK 500 GLU A 253 -170.62 -170.61 REMARK 500 ARG A 274 -5.93 71.40 REMARK 500 SER A 335 56.93 -115.50 REMARK 500 ARG A 373 -36.39 -138.07 REMARK 500 ALA A 392 51.47 36.20 REMARK 500 LYS A 400 41.84 -71.90 REMARK 500 ALA A 440 -30.02 -164.66 REMARK 500 ALA A 448 2.36 -66.66 REMARK 500 ASN A 480 -75.37 -139.38 REMARK 500 MET A 482 76.04 -112.66 REMARK 500 VAL A 555 -75.15 -87.49 REMARK 500 LYS A 557 18.46 54.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AU A 607 AU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 244 SG REMARK 620 2 THR A 247 OG1 71.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AU A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AU A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AU A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AU A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AU A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AU A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AU A 609 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CVM RELATED DB: PDB REMARK 900 RELATED ID: 5CVN RELATED DB: PDB REMARK 900 RELATED ID: 5CVO RELATED DB: PDB DBREF 5CVL A 2 580 UNP Q8TAF3 WDR48_HUMAN 2 580 SEQADV 5CVL MET A -14 UNP Q8TAF3 INITIATING METHIONINE SEQADV 5CVL HIS A -13 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL HIS A -12 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL HIS A -11 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL HIS A -10 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL HIS A -9 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL HIS A -8 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL GLY A -7 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL GLU A -6 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL ASN A -5 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL LEU A -4 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL TYR A -3 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL PHE A -2 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL GLN A -1 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL GLY A 0 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL SER A 1 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL GLY A 581 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL ASN A 582 UNP Q8TAF3 EXPRESSION TAG SEQADV 5CVL SER A 583 UNP Q8TAF3 EXPRESSION TAG SEQRES 1 A 598 MET HIS HIS HIS HIS HIS HIS GLY GLU ASN LEU TYR PHE SEQRES 2 A 598 GLN GLY SER ALA ALA HIS HIS ARG GLN ASN THR ALA GLY SEQRES 3 A 598 ARG ARG LYS VAL GLN VAL SER TYR VAL ILE ARG ASP GLU SEQRES 4 A 598 VAL GLU LYS TYR ASN ARG ASN GLY VAL ASN ALA LEU GLN SEQRES 5 A 598 LEU ASP PRO ALA LEU ASN ARG LEU PHE THR ALA GLY ARG SEQRES 6 A 598 ASP SER ILE ILE ARG ILE TRP SER VAL ASN GLN HIS LYS SEQRES 7 A 598 GLN ASP PRO TYR ILE ALA SER MET GLU HIS HIS THR ASP SEQRES 8 A 598 TRP VAL ASN ASP ILE VAL LEU CYS CYS ASN GLY LYS THR SEQRES 9 A 598 LEU ILE SER ALA SER SER ASP THR THR VAL LYS VAL TRP SEQRES 10 A 598 ASN ALA HIS LYS GLY PHE CYS MET SER THR LEU ARG THR SEQRES 11 A 598 HIS LYS ASP TYR VAL LYS ALA LEU ALA TYR ALA LYS ASP SEQRES 12 A 598 LYS GLU LEU VAL ALA SER ALA GLY LEU ASP ARG GLN ILE SEQRES 13 A 598 PHE LEU TRP ASP VAL ASN THR LEU THR ALA LEU THR ALA SEQRES 14 A 598 SER ASN ASN THR VAL THR THR SER SER LEU SER GLY ASN SEQRES 15 A 598 LYS ASP SER ILE TYR SER LEU ALA MET ASN GLN LEU GLY SEQRES 16 A 598 THR ILE ILE VAL SER GLY SER THR GLU LYS VAL LEU ARG SEQRES 17 A 598 VAL TRP ASP PRO ARG THR CYS ALA LYS LEU MET LYS LEU SEQRES 18 A 598 LYS GLY HIS THR ASP ASN VAL LYS ALA LEU LEU LEU ASN SEQRES 19 A 598 ARG ASP GLY THR GLN CYS LEU SER GLY SER SER ASP GLY SEQRES 20 A 598 THR ILE ARG LEU TRP SER LEU GLY GLN GLN ARG CYS ILE SEQRES 21 A 598 ALA THR TYR ARG VAL HIS ASP GLU GLY VAL TRP ALA LEU SEQRES 22 A 598 GLN VAL ASN ASP ALA PHE THR HIS VAL TYR SER GLY GLY SEQRES 23 A 598 ARG ASP ARG LYS ILE TYR CYS THR ASP LEU ARG ASN PRO SEQRES 24 A 598 ASP ILE ARG VAL LEU ILE CYS GLU GLU LYS ALA PRO VAL SEQRES 25 A 598 LEU LYS MET GLU LEU ASP ARG SER ALA ASP PRO PRO PRO SEQRES 26 A 598 ALA ILE TRP VAL ALA THR THR LYS SER THR VAL ASN LYS SEQRES 27 A 598 TRP THR LEU LYS GLY ILE HIS ASN PHE ARG ALA SER GLY SEQRES 28 A 598 ASP TYR ASP ASN ASP CYS THR ASN PRO ILE THR PRO LEU SEQRES 29 A 598 CYS THR GLN PRO ASP GLN VAL ILE LYS GLY GLY ALA SER SEQRES 30 A 598 ILE ILE GLN CYS HIS ILE LEU ASN ASP LYS ARG HIS ILE SEQRES 31 A 598 LEU THR LYS ASP THR ASN ASN ASN VAL ALA TYR TRP ASP SEQRES 32 A 598 VAL LEU LYS ALA CYS LYS VAL GLU ASP LEU GLY LYS VAL SEQRES 33 A 598 ASP PHE GLU ASP GLU ILE LYS LYS ARG PHE LYS MET VAL SEQRES 34 A 598 TYR VAL PRO ASN TRP PHE SER VAL ASP LEU LYS THR GLY SEQRES 35 A 598 MET LEU THR ILE THR LEU ASP GLU SER ASP CYS PHE ALA SEQRES 36 A 598 ALA TRP VAL SER ALA LYS ASP ALA GLY PHE SER SER PRO SEQRES 37 A 598 ASP GLY SER ASP PRO LYS LEU ASN LEU GLY GLY LEU LEU SEQRES 38 A 598 LEU GLN ALA LEU LEU GLU TYR TRP PRO ARG THR HIS VAL SEQRES 39 A 598 ASN PRO MET ASP GLU GLU GLU ASN GLU VAL ASN HIS VAL SEQRES 40 A 598 ASN GLY GLU GLN GLU ASN ARG VAL GLN LYS GLY ASN GLY SEQRES 41 A 598 TYR PHE GLN VAL PRO PRO HIS THR PRO VAL ILE PHE GLY SEQRES 42 A 598 GLU ALA GLY GLY ARG THR LEU PHE ARG LEU LEU CYS ARG SEQRES 43 A 598 ASP SER GLY GLY GLU THR GLU SER MET LEU LEU ASN GLU SEQRES 44 A 598 THR VAL PRO GLN TRP VAL ILE ASP ILE THR VAL ASP LYS SEQRES 45 A 598 ASN MET PRO LYS PHE ASN LYS ILE PRO PHE TYR LEU GLN SEQRES 46 A 598 PRO HIS ALA SER SER GLY ALA LYS THR LEU GLY ASN SER HET PO4 A 601 5 HET PO4 A 602 5 HET AU A 603 1 HET AU A 604 1 HET AU A 605 1 HET AU A 606 1 HET AU A 607 1 HET AU A 608 1 HET AU A 609 1 HETNAM PO4 PHOSPHATE ION HETNAM AU GOLD ION FORMUL 2 PO4 2(O4 P 3-) FORMUL 4 AU 7(AU 1+) FORMUL 11 HOH *137(H2 O) HELIX 1 AA1 VAL A 146 ALA A 151 1 6 HELIX 2 AA2 GLY A 328 SER A 335 1 8 HELIX 3 AA3 ASP A 402 ARG A 410 1 9 HELIX 4 AA4 LEU A 462 LEU A 471 1 10 HELIX 5 AA5 TRP A 474 HIS A 478 5 5 HELIX 6 AA6 ARG A 531 GLY A 534 5 4 HELIX 7 AA7 GLY A 535 VAL A 546 1 12 HELIX 8 AA8 PRO A 547 VAL A 555 1 9 SHEET 1 AA1 5 SER A 421 ASP A 423 0 SHEET 2 AA1 5 LEU A 429 LEU A 433 -1 O THR A 432 N SER A 421 SHEET 3 AA1 5 VAL A 15 ILE A 21 -1 N VAL A 17 O LEU A 433 SHEET 4 AA1 5 PRO A 514 GLU A 519 -1 O ILE A 516 N SER A 18 SHEET 5 AA1 5 THR A 524 LEU A 529 -1 O LEU A 528 N VAL A 515 SHEET 1 AA2 4 VAL A 33 ASP A 39 0 SHEET 2 AA2 4 ARG A 44 GLY A 49 -1 O ARG A 44 N ASP A 39 SHEET 3 AA2 4 ILE A 54 SER A 58 -1 O TRP A 57 N LEU A 45 SHEET 4 AA2 4 TYR A 67 MET A 71 -1 O MET A 71 N ILE A 54 SHEET 1 AA3 4 VAL A 78 CYS A 84 0 SHEET 2 AA3 4 THR A 89 SER A 94 -1 O ALA A 93 N ASP A 80 SHEET 3 AA3 4 VAL A 99 ASN A 103 -1 O TRP A 102 N LEU A 90 SHEET 4 AA3 4 PHE A 108 LEU A 113 -1 O MET A 110 N VAL A 101 SHEET 1 AA4 4 VAL A 120 ALA A 126 0 SHEET 2 AA4 4 LEU A 131 GLY A 136 -1 O ALA A 135 N ALA A 122 SHEET 3 AA4 4 ILE A 141 ASP A 145 -1 O PHE A 142 N SER A 134 SHEET 4 AA4 4 SER A 162 LEU A 164 -1 O SER A 162 N LEU A 143 SHEET 1 AA5 4 ILE A 171 MET A 176 0 SHEET 2 AA5 4 ILE A 183 SER A 187 -1 O VAL A 184 N ALA A 175 SHEET 3 AA5 4 LEU A 192 TRP A 195 -1 O ARG A 193 N SER A 185 SHEET 4 AA5 4 LYS A 202 LEU A 206 -1 O LEU A 206 N LEU A 192 SHEET 1 AA6 4 VAL A 213 LEU A 218 0 SHEET 2 AA6 4 GLN A 224 SER A 229 -1 O GLY A 228 N ALA A 215 SHEET 3 AA6 4 THR A 233 SER A 238 -1 O ARG A 235 N SER A 227 SHEET 4 AA6 4 ARG A 243 ARG A 249 -1 O TYR A 248 N ILE A 234 SHEET 1 AA7 4 VAL A 255 VAL A 260 0 SHEET 2 AA7 4 HIS A 266 GLY A 271 -1 O TYR A 268 N GLN A 259 SHEET 3 AA7 4 LYS A 275 ASP A 280 -1 O THR A 279 N VAL A 267 SHEET 4 AA7 4 ARG A 287 GLU A 292 -1 O CYS A 291 N ILE A 276 SHEET 1 AA8 4 VAL A 297 LEU A 302 0 SHEET 2 AA8 4 ALA A 311 THR A 316 -1 O TRP A 313 N GLU A 301 SHEET 3 AA8 4 VAL A 321 THR A 325 -1 O TRP A 324 N ILE A 312 SHEET 4 AA8 4 GLN A 355 ILE A 357 -1 O ILE A 357 N VAL A 321 SHEET 1 AA9 4 ILE A 363 ILE A 368 0 SHEET 2 AA9 4 HIS A 374 ASP A 379 -1 O LEU A 376 N HIS A 367 SHEET 3 AA9 4 VAL A 384 ASP A 388 -1 O TRP A 387 N ILE A 375 SHEET 4 AA9 4 CYS A 393 GLY A 399 -1 O CYS A 393 N ASP A 388 SHEET 1 AB1 2 TRP A 442 SER A 444 0 SHEET 2 AB1 2 LYS A 459 ASN A 461 -1 O LEU A 460 N VAL A 443 LINK SG CYS A 85 AU AU A 604 1555 1555 2.42 LINK SG CYS A 109 AU AU A 606 1555 1555 2.47 LINK SG CYS A 244 AU AU A 607 1555 1555 2.58 LINK OG1 THR A 247 AU AU A 607 1555 1555 2.71 LINK SG CYS A 278 AU AU A 603 1555 1555 2.26 LINK SG CYS A 278 AU AU A 609 1555 1555 2.59 LINK SG CYS A 366 AU AU A 605 1555 1555 2.42 LINK SG CYS A 366 AU AU A 608 1555 1555 2.98 CISPEP 1 ASP A 307 PRO A 308 0 4.25 CISPEP 2 PRO A 453 ASP A 454 0 -2.14 CISPEP 3 ASN A 480 PRO A 481 0 3.28 SITE 1 AC1 6 LYS A 168 ARG A 193 LYS A 202 LYS A 205 SITE 2 AC1 6 HOH A 716 HOH A 739 SITE 1 AC2 5 ARG A 274 LYS A 294 LYS A 318 HOH A 708 SITE 2 AC2 5 HOH A 717 SITE 1 AC3 3 TYR A 268 CYS A 278 AU A 609 SITE 1 AC4 3 CYS A 85 GLU A 130 ASN A 147 SITE 1 AC5 3 CYS A 366 LEU A 424 AU A 608 SITE 1 AC6 4 CYS A 109 SER A 111 THR A 112 MET A 540 SITE 1 AC7 3 ARG A 235 CYS A 244 THR A 247 SITE 1 AC8 3 CYS A 366 AU A 605 HOH A 796 SITE 1 AC9 3 HIS A 266 CYS A 278 AU A 603 CRYST1 139.520 139.520 235.109 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007167 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004253 0.00000