HEADER VIRUS 27-JUL-15 5CVZ TITLE INVESTIGATION OF RNA STRUCTURE IN SATELLITE PANICUM MOSAIC VIRUS - TITLE 2 GLUTARALDEHYDE TREATED COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SPMV CAPSID PROTEIN; COMPND 5 SYNONYM: CAPSID PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PANICUM MOSAIC SATELLITE VIRUS; SOURCE 3 ORGANISM_COMMON: SPMV; SOURCE 4 ORGANISM_TAXID: 154834; SOURCE 5 TISSUE: WHITE PERL MILLET LEAVES; SOURCE 6 OTHER_DETAILS: SPMV INFECTED WHITE PERL MILLET LEAVES KEYWDS CAPSID PROTEIN, SATELLITE VIRUS, GLUTARALDEHYDE CROSS-LINKED, VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR D.L.MAKINO,J.DAY,S.B.LARSON,A.MCPHERSON REVDAT 5 27-SEP-23 5CVZ 1 REMARK REVDAT 4 25-DEC-19 5CVZ 1 REMARK REVDAT 3 21-MAR-18 5CVZ 1 REMARK REVDAT 2 18-OCT-17 5CVZ 1 REMARK REVDAT 1 11-OCT-17 5CVZ 0 JRNL AUTH D.L.MAKINO,J.DAY,S.B.LARSON,A.MCPHERSON JRNL TITL INVESTIGATION OF RNA STRUCTURE IN SATELLITE PANICUM MOSAIC JRNL TITL 2 VIRUS. JRNL REF VIROLOGY V. 351 420 2006 JRNL REFN ISSN 0042-6822 JRNL PMID 16677679 JRNL DOI 10.1016/J.VIROL.2006.03.028 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : RESIDUAL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.6 REMARK 3 NUMBER OF REFLECTIONS : 50688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.900 REMARK 3 FREE R VALUE TEST SET COUNT : 5164 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3660 REMARK 3 BIN R VALUE (WORKING SET) : 0.2922 REMARK 3 BIN FREE R VALUE : 0.2971 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 352 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1061 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.549 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.026 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.805 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 1.859 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.041 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 45.45 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000212076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58624 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.7250 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: 1STM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6%-14% PEG 3350, PH 5.0-7.0. REMARK 280 GLUTERALDEHYDE-TREATED BEFORE FREEZING, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 113.17500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.17500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 113.17500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 113.17500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 113.17500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 113.17500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 113.17500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 113.17500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 113.17500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 113.17500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 113.17500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 113.17500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 113.17500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 113.17500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 113.17500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 113.17500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 113.17500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 113.17500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.935850 -0.120856 0.331025 -0.43510 REMARK 350 BIOMT2 2 0.352380 0.330397 -0.875595 3.55330 REMARK 350 BIOMT3 2 -0.003549 0.936073 0.351789 -0.84690 REMARK 350 BIOMT1 3 0.832053 0.156829 0.532064 -1.55190 REMARK 350 BIOMT2 3 0.449307 -0.753046 -0.480671 5.31560 REMARK 350 BIOMT3 3 0.325286 0.639004 -0.697039 2.18280 REMARK 350 BIOMT1 4 0.832053 0.449307 0.325287 -1.80720 REMARK 350 BIOMT2 4 0.156830 -0.753048 0.639002 2.85150 REMARK 350 BIOMT3 4 0.532064 -0.480669 -0.697040 4.90230 REMARK 350 BIOMT1 5 0.935850 0.352381 -0.003547 -0.84810 REMARK 350 BIOMT2 5 -0.120858 0.330395 0.936073 -0.43380 REMARK 350 BIOMT3 5 0.331026 -0.875595 0.351788 3.55320 REMARK 350 BIOMT1 6 -0.003549 0.936073 0.351789 -0.84690 REMARK 350 BIOMT2 6 0.935850 -0.120856 0.331025 -0.43510 REMARK 350 BIOMT3 6 0.352380 0.330397 -0.875595 3.55330 REMARK 350 BIOMT1 7 0.325286 0.639004 -0.697039 2.18280 REMARK 350 BIOMT2 7 0.832053 0.156829 0.532064 -1.55190 REMARK 350 BIOMT3 7 0.449307 -0.753046 -0.480671 5.31560 REMARK 350 BIOMT1 8 0.532064 -0.480669 -0.697040 4.90230 REMARK 350 BIOMT2 8 0.832053 0.449307 0.325287 -1.80720 REMARK 350 BIOMT3 8 0.156830 -0.753048 0.639002 2.85150 REMARK 350 BIOMT1 9 0.331026 -0.875595 0.351788 3.55320 REMARK 350 BIOMT2 9 0.935850 0.352381 -0.003547 -0.84810 REMARK 350 BIOMT3 9 -0.120858 0.330395 0.936073 -0.43380 REMARK 350 BIOMT1 10 0.000001 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 10 1.000000 0.000002 -0.000001 -0.00010 REMARK 350 BIOMT3 10 -0.000002 1.000000 0.000000 0.00010 REMARK 350 BIOMT1 11 -0.102157 -0.990263 0.094570 5.95150 REMARK 350 BIOMT2 11 -0.990263 0.092196 -0.104303 5.96510 REMARK 350 BIOMT3 11 0.094568 -0.104304 -0.990039 5.95740 REMARK 350 BIOMT1 12 -0.444889 -0.226309 0.866521 2.39710 REMARK 350 BIOMT2 12 -0.893879 0.052505 -0.445222 6.81190 REMARK 350 BIOMT3 12 0.055261 -0.972640 -0.225651 6.38400 REMARK 350 BIOMT1 13 -0.499171 0.790122 0.355717 1.05270 REMARK 350 BIOMT2 13 -0.816455 -0.291382 -0.498496 7.76430 REMARK 350 BIOMT3 13 -0.290223 -0.539262 0.790549 3.09500 REMARK 350 BIOMT1 14 -0.189988 0.654358 -0.731929 3.77620 REMARK 350 BIOMT2 14 -0.864988 -0.464225 -0.190499 7.50620 REMARK 350 BIOMT3 14 -0.464435 0.596917 0.654210 0.63550 REMARK 350 BIOMT1 15 0.055381 -0.445981 -0.893327 6.80380 REMARK 350 BIOMT2 15 -0.972407 -0.227161 0.053124 6.39430 REMARK 350 BIOMT3 15 -0.226621 0.865736 -0.446256 2.40460 REMARK 350 BIOMT1 16 -0.893879 0.052505 -0.445222 6.81190 REMARK 350 BIOMT2 16 0.055261 -0.972640 -0.225651 6.38400 REMARK 350 BIOMT3 16 -0.444889 -0.226309 0.866521 2.39710 REMARK 350 BIOMT1 17 -0.816455 -0.291382 -0.498496 7.76430 REMARK 350 BIOMT2 17 -0.290223 -0.539262 0.790549 3.09500 REMARK 350 BIOMT3 17 -0.499171 0.790122 0.355717 1.05270 REMARK 350 BIOMT1 18 -0.864988 -0.464225 -0.190499 7.50620 REMARK 350 BIOMT2 18 -0.464435 0.596917 0.654210 0.63550 REMARK 350 BIOMT3 18 -0.189988 0.654358 -0.731929 3.77620 REMARK 350 BIOMT1 19 -0.972407 -0.227161 0.053124 6.39430 REMARK 350 BIOMT2 19 -0.226621 0.865736 -0.446256 2.40460 REMARK 350 BIOMT3 19 0.055381 -0.445981 -0.893327 6.80380 REMARK 350 BIOMT1 20 -0.990263 0.092196 -0.104303 5.96510 REMARK 350 BIOMT2 20 0.094568 -0.104304 -0.990039 5.95740 REMARK 350 BIOMT3 20 -0.102157 -0.990263 0.094570 5.95150 REMARK 350 BIOMT1 21 0.156830 -0.753048 0.639002 2.85150 REMARK 350 BIOMT2 21 0.532064 -0.480669 -0.697040 4.90230 REMARK 350 BIOMT3 21 0.832053 0.449307 0.325287 -1.80720 REMARK 350 BIOMT1 22 -0.120858 0.330395 0.936073 -0.43380 REMARK 350 BIOMT2 22 0.331026 -0.875595 0.351788 3.55320 REMARK 350 BIOMT3 22 0.935850 0.352381 -0.003547 -0.84810 REMARK 350 BIOMT1 23 -0.000002 1.000000 0.000000 0.00010 REMARK 350 BIOMT2 23 0.000001 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 23 1.000000 0.000002 -0.000001 -0.00010 REMARK 350 BIOMT1 24 0.352380 0.330397 -0.875595 3.55330 REMARK 350 BIOMT2 24 -0.003549 0.936073 0.351789 -0.84690 REMARK 350 BIOMT3 24 0.935850 -0.120856 0.331025 -0.43510 REMARK 350 BIOMT1 25 0.449307 -0.753046 -0.480671 5.31560 REMARK 350 BIOMT2 25 0.325286 0.639004 -0.697039 2.18280 REMARK 350 BIOMT3 25 0.832053 0.156829 0.532064 -1.55190 REMARK 350 BIOMT1 26 -0.481347 0.447884 -0.753462 5.32330 REMARK 350 BIOMT2 26 -0.697135 0.325445 0.638818 2.18330 REMARK 350 BIOMT3 26 0.531327 0.832758 0.155583 -1.54800 REMARK 350 BIOMT1 27 -0.289969 -0.499141 -0.816564 7.76230 REMARK 350 BIOMT2 27 -0.539999 0.789760 -0.290998 3.10190 REMARK 350 BIOMT3 27 0.790139 0.356563 -0.498541 1.04810 REMARK 350 BIOMT1 28 -0.444358 -0.894232 0.053800 6.80640 REMARK 350 BIOMT2 28 -0.226028 0.053801 -0.972634 6.38950 REMARK 350 BIOMT3 28 0.866866 -0.444358 -0.226028 2.39360 REMARK 350 BIOMT1 29 -0.731154 -0.191386 0.654816 3.77670 REMARK 350 BIOMT2 29 -0.189120 -0.865363 -0.464091 7.50280 REMARK 350 BIOMT3 29 0.655475 -0.463161 0.596519 0.62910 REMARK 350 BIOMT1 30 -0.754014 0.638089 0.155902 2.85990 REMARK 350 BIOMT2 30 -0.480278 -0.697477 0.531845 4.90300 REMARK 350 BIOMT3 30 0.448103 0.326142 0.832367 -1.80720 REMARK 350 BIOMT1 31 0.790643 -0.290166 -0.539154 3.09420 REMARK 350 BIOMT2 31 0.356453 -0.497821 0.790642 1.04480 REMARK 350 BIOMT3 31 -0.497820 -0.817299 -0.290169 7.76120 REMARK 350 BIOMT1 32 0.639588 -0.696111 0.326124 2.17570 REMARK 350 BIOMT2 32 0.155360 0.532543 0.832022 -1.54890 REMARK 350 BIOMT3 32 -0.752855 -0.481485 0.448756 5.31920 REMARK 350 BIOMT1 33 0.352105 -0.002015 0.935958 -0.85220 REMARK 350 BIOMT2 33 0.330098 0.936008 -0.122167 -0.42870 REMARK 350 BIOMT3 33 -0.875818 0.351974 0.330238 3.55580 REMARK 350 BIOMT1 34 0.325485 0.832906 0.447579 -1.80510 REMARK 350 BIOMT2 34 0.639187 0.155002 -0.753269 2.85700 REMARK 350 BIOMT3 34 -0.696778 0.531265 -0.481932 4.90790 REMARK 350 BIOMT1 35 0.596517 0.654818 -0.464092 0.63390 REMARK 350 BIOMT2 35 0.655475 -0.731153 -0.189122 3.76780 REMARK 350 BIOMT3 35 -0.463163 -0.191386 -0.865362 7.50690 REMARK 350 BIOMT1 36 -0.464435 0.596917 0.654210 0.63550 REMARK 350 BIOMT2 36 -0.189988 0.654358 -0.731929 3.77620 REMARK 350 BIOMT3 36 -0.864988 -0.464225 -0.190499 7.50620 REMARK 350 BIOMT1 37 -0.226621 0.865736 -0.446256 2.40460 REMARK 350 BIOMT2 37 0.055381 -0.445981 -0.893327 6.80380 REMARK 350 BIOMT3 37 -0.972407 -0.227161 0.053124 6.39430 REMARK 350 BIOMT1 38 0.094568 -0.104304 -0.990039 5.95740 REMARK 350 BIOMT2 38 -0.102157 -0.990263 0.094570 5.95150 REMARK 350 BIOMT3 38 -0.990263 0.092196 -0.104303 5.96510 REMARK 350 BIOMT1 39 0.055261 -0.972640 -0.225651 6.38400 REMARK 350 BIOMT2 39 -0.444889 -0.226309 0.866521 2.39710 REMARK 350 BIOMT3 39 -0.893879 0.052505 -0.445222 6.81190 REMARK 350 BIOMT1 40 -0.290223 -0.539262 0.790549 3.09500 REMARK 350 BIOMT2 40 -0.499171 0.790122 0.355717 1.05270 REMARK 350 BIOMT3 40 -0.816455 -0.291382 -0.498496 7.76430 REMARK 350 BIOMT1 41 0.155360 0.532543 0.832022 -1.54890 REMARK 350 BIOMT2 41 -0.752855 -0.481485 0.448756 5.31920 REMARK 350 BIOMT3 41 0.639588 -0.696111 0.326124 2.17570 REMARK 350 BIOMT1 42 0.330098 0.936008 -0.122167 -0.42870 REMARK 350 BIOMT2 42 -0.875818 0.351974 0.330238 3.55580 REMARK 350 BIOMT3 42 0.352105 -0.002015 0.935958 -0.85220 REMARK 350 BIOMT1 43 0.639187 0.155002 -0.753269 2.85700 REMARK 350 BIOMT2 43 -0.696778 0.531265 -0.481932 4.90790 REMARK 350 BIOMT3 43 0.325485 0.832906 0.447579 -1.80510 REMARK 350 BIOMT1 44 0.655475 -0.731153 -0.189122 3.76780 REMARK 350 BIOMT2 44 -0.463163 -0.191386 -0.865362 7.50690 REMARK 350 BIOMT3 44 0.596517 0.654818 -0.464092 0.63390 REMARK 350 BIOMT1 45 0.356453 -0.497821 0.790642 1.04480 REMARK 350 BIOMT2 45 -0.497820 -0.817299 -0.290169 7.76120 REMARK 350 BIOMT3 45 0.790643 -0.290166 -0.539154 3.09420 REMARK 350 BIOMT1 46 0.790139 0.356563 -0.498541 1.04810 REMARK 350 BIOMT2 46 -0.289969 -0.499141 -0.816564 7.76230 REMARK 350 BIOMT3 46 -0.539999 0.789760 -0.290998 3.10190 REMARK 350 BIOMT1 47 0.866866 -0.444358 -0.226028 2.39360 REMARK 350 BIOMT2 47 -0.444358 -0.894232 0.053800 6.80640 REMARK 350 BIOMT3 47 -0.226028 0.053801 -0.972634 6.38950 REMARK 350 BIOMT1 48 0.655475 -0.463161 0.596519 0.62910 REMARK 350 BIOMT2 48 -0.731154 -0.191386 0.654816 3.77670 REMARK 350 BIOMT3 48 -0.189120 -0.865363 -0.464091 7.50280 REMARK 350 BIOMT1 49 0.448103 0.326142 0.832367 -1.80720 REMARK 350 BIOMT2 49 -0.754014 0.638089 0.155902 2.85990 REMARK 350 BIOMT3 49 -0.480278 -0.697477 0.531845 4.90300 REMARK 350 BIOMT1 50 0.531327 0.832758 0.155583 -1.54800 REMARK 350 BIOMT2 50 -0.481347 0.447884 -0.753462 5.32330 REMARK 350 BIOMT3 50 -0.697135 0.325445 0.638818 2.18330 REMARK 350 BIOMT1 51 -0.463163 -0.191386 -0.865362 7.50690 REMARK 350 BIOMT2 51 0.596517 0.654818 -0.464092 0.63390 REMARK 350 BIOMT3 51 0.655475 -0.731153 -0.189122 3.76780 REMARK 350 BIOMT1 52 -0.497820 -0.817299 -0.290169 7.76120 REMARK 350 BIOMT2 52 0.790643 -0.290166 -0.539154 3.09420 REMARK 350 BIOMT3 52 0.356453 -0.497821 0.790642 1.04480 REMARK 350 BIOMT1 53 -0.752855 -0.481485 0.448756 5.31920 REMARK 350 BIOMT2 53 0.639588 -0.696111 0.326124 2.17570 REMARK 350 BIOMT3 53 0.155360 0.532543 0.832022 -1.54890 REMARK 350 BIOMT1 54 -0.875818 0.351974 0.330238 3.55580 REMARK 350 BIOMT2 54 0.352105 -0.002015 0.935958 -0.85220 REMARK 350 BIOMT3 54 0.330098 0.936008 -0.122167 -0.42870 REMARK 350 BIOMT1 55 -0.696778 0.531265 -0.481932 4.90790 REMARK 350 BIOMT2 55 0.325485 0.832906 0.447579 -1.80510 REMARK 350 BIOMT3 55 0.639187 0.155002 -0.753269 2.85700 REMARK 350 BIOMT1 56 -0.480278 -0.697477 0.531845 4.90300 REMARK 350 BIOMT2 56 0.448103 0.326142 0.832367 -1.80720 REMARK 350 BIOMT3 56 -0.754014 0.638089 0.155902 2.85990 REMARK 350 BIOMT1 57 -0.697135 0.325445 0.638818 2.18330 REMARK 350 BIOMT2 57 0.531327 0.832758 0.155583 -1.54800 REMARK 350 BIOMT3 57 -0.481347 0.447884 -0.753462 5.32330 REMARK 350 BIOMT1 58 -0.539999 0.789760 -0.290998 3.10190 REMARK 350 BIOMT2 58 0.790139 0.356563 -0.498541 1.04810 REMARK 350 BIOMT3 58 -0.289969 -0.499141 -0.816564 7.76230 REMARK 350 BIOMT1 59 -0.226028 0.053801 -0.972634 6.38950 REMARK 350 BIOMT2 59 0.866866 -0.444358 -0.226028 2.39360 REMARK 350 BIOMT3 59 -0.444358 -0.894232 0.053800 6.80640 REMARK 350 BIOMT1 60 -0.189120 -0.865363 -0.464091 7.50280 REMARK 350 BIOMT2 60 0.655475 -0.463161 0.596519 0.62910 REMARK 350 BIOMT3 60 -0.731154 -0.191386 0.654816 3.77670 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 45 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 29 169.23 176.42 REMARK 500 LEU A 70 142.58 -173.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1STM RELATED DB: PDB REMARK 900 1STM CONTAINS THE SAME PROTEIN CRYSTALLIZED IN A DIFFERENT SPACE REMARK 900 GROUP REMARK 900 RELATED ID: 5CW0 RELATED DB: PDB DBREF 5CVZ A 17 157 UNP Q86993 COAT_SPMV 17 157 SEQRES 1 A 141 ALA ALA ALA THR SER LEU VAL TYR ASP THR CYS TYR VAL SEQRES 2 A 141 THR LEU THR GLU ARG ALA THR THR SER PHE GLN ARG GLN SEQRES 3 A 141 SER PHE PRO THR LEU LYS GLY MET GLY ASP ARG ALA PHE SEQRES 4 A 141 GLN VAL VAL ALA PHE THR ILE GLN GLY VAL SER ALA ALA SEQRES 5 A 141 PRO LEU MET TYR ASN ALA ARG LEU TYR ASN PRO GLY ASP SEQRES 6 A 141 THR ASP SER VAL HIS ALA THR GLY VAL GLN LEU MET GLY SEQRES 7 A 141 THR VAL PRO ARG THR VAL ARG LEU THR PRO ARG VAL GLY SEQRES 8 A 141 GLN ASN ASN TRP PHE PHE GLY ASN THR GLU GLU ALA GLU SEQRES 9 A 141 THR ILE LEU ALA ILE ASP GLY LEU VAL SER THR LYS GLY SEQRES 10 A 141 ALA ASN ALA PRO SER ASN THR VAL ILE VAL THR GLY CYS SEQRES 11 A 141 PHE ARG LEU ALA PRO SER GLU LEU GLN SER SER HELIX 1 AA1 PHE A 44 MET A 50 1 7 SHEET 1 AA1 4 SER A 21 VAL A 29 0 SHEET 2 AA1 4 ASN A 139 LEU A 149 -1 O PHE A 147 N VAL A 23 SHEET 3 AA1 4 PHE A 55 SER A 66 -1 N VAL A 58 O CYS A 146 SHEET 4 AA1 4 ARG A 98 LEU A 102 -1 O LEU A 102 N PHE A 60 SHEET 1 AA2 4 THR A 36 GLN A 40 0 SHEET 2 AA2 4 THR A 121 LEU A 128 -1 O LEU A 123 N PHE A 39 SHEET 3 AA2 4 MET A 71 LEU A 76 -1 N ARG A 75 O ALA A 124 SHEET 4 AA2 4 HIS A 86 ALA A 87 -1 O HIS A 86 N LEU A 76 SHEET 1 AA3 4 THR A 36 GLN A 40 0 SHEET 2 AA3 4 THR A 121 LEU A 128 -1 O LEU A 123 N PHE A 39 SHEET 3 AA3 4 MET A 71 LEU A 76 -1 N ARG A 75 O ALA A 124 SHEET 4 AA3 4 GLN A 91 LEU A 92 -1 O GLN A 91 N TYR A 72 CRYST1 226.350 226.350 226.350 90.00 90.00 90.00 P 21 3 240 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004418 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004418 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004418 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.935851 0.352379 -0.003547 -0.84800 MTRIX2 2 -0.120857 0.330396 0.936073 -0.43380 MTRIX3 2 0.331024 -0.875596 0.351788 3.55330 MTRIX1 3 0.832054 0.449305 0.325287 -1.80720 MTRIX2 3 0.156828 -0.753048 0.639002 2.85150 MTRIX3 3 0.532064 -0.480670 -0.697040 4.90240 MTRIX1 4 0.832053 0.156827 0.532064 -1.55190 MTRIX2 4 0.449305 -0.753047 -0.480671 5.31570 MTRIX3 4 0.325288 0.639003 -0.697039 2.18280 MTRIX1 5 0.935850 -0.120858 0.331026 -0.43500 MTRIX2 5 0.352381 0.330396 -0.875595 3.55330 MTRIX3 5 -0.003547 0.936072 0.351789 -0.84690 MTRIX1 6 0.356452 -0.497822 0.790642 1.04490 MTRIX2 6 -0.497821 -0.817298 -0.290169 7.76120 MTRIX3 6 0.790643 -0.290167 -0.539154 3.09420 MTRIX1 7 0.655474 -0.731155 -0.189122 3.76790 MTRIX2 7 -0.463163 -0.191385 -0.865362 7.50690 MTRIX3 7 0.596519 0.654817 -0.464091 0.63390 MTRIX1 8 0.639188 0.155001 -0.753268 2.85700 MTRIX2 8 -0.696776 0.531266 -0.481933 4.90780 MTRIX3 8 0.325486 0.832905 0.447580 -1.80520 MTRIX1 9 0.330100 0.936007 -0.122166 -0.42880 MTRIX2 9 -0.875818 0.351975 0.330237 3.55580 MTRIX3 9 0.352104 -0.002016 0.935959 -0.85210 MTRIX1 10 0.155361 0.532542 0.832023 -1.54890 MTRIX2 10 -0.752856 -0.481483 0.448755 5.31920 MTRIX3 10 0.639586 -0.696112 0.326124 2.17580 MTRIX1 11 -0.102159 -0.990263 0.094569 5.95160 MTRIX2 11 -0.990263 0.092198 -0.104303 5.96510 MTRIX3 11 0.094569 -0.104304 -0.990039 5.95740 MTRIX1 12 0.055380 -0.445981 -0.893327 6.80380 MTRIX2 12 -0.972408 -0.227159 0.053123 6.39420 MTRIX3 12 -0.226619 0.865737 -0.446255 2.40450 MTRIX1 13 -0.189987 0.654359 -0.731929 3.77610 MTRIX2 13 -0.864989 -0.464224 -0.190500 7.50620 MTRIX3 13 -0.464434 0.596918 0.654209 0.63540 MTRIX1 14 -0.499170 0.790123 0.355717 1.05260 MTRIX2 14 -0.816455 -0.291380 -0.498496 7.76430 MTRIX3 14 -0.290224 -0.539261 0.790549 3.09500 MTRIX1 15 -0.444890 -0.226308 0.866521 2.39710 MTRIX2 15 -0.893879 0.052507 -0.445223 6.81180 MTRIX3 15 0.055259 -0.972640 -0.225651 6.38400 MTRIX1 16 0.531329 0.832757 0.155584 -1.54810 MTRIX2 16 -0.481346 0.447885 -0.753462 5.32330 MTRIX3 16 -0.697134 0.325446 0.638818 2.18330 MTRIX1 17 0.448103 0.326141 0.832368 -1.80720 MTRIX2 17 -0.754013 0.638091 0.155902 2.85980 MTRIX3 17 -0.480280 -0.697476 0.531844 4.90300 MTRIX1 18 0.655473 -0.463163 0.596519 0.62910 MTRIX2 18 -0.731155 -0.191385 0.654816 3.77660 MTRIX3 18 -0.189121 -0.865362 -0.464092 7.50280 MTRIX1 19 0.866865 -0.444360 -0.226028 2.39370 MTRIX2 19 -0.444360 -0.894231 0.053799 6.80640 MTRIX3 19 -0.226028 0.053801 -0.972634 6.38950 MTRIX1 20 0.790140 0.356562 -0.498541 1.04810 MTRIX2 20 -0.289970 -0.499140 -0.816564 7.76230 MTRIX3 20 -0.539997 0.789762 -0.290998 3.10180