HEADER METAL BINDING PROTEIN 29-JUL-15 5CXM TITLE CRYSTAL STRUCTURE OF THE CYANOBACTERIAL PLASMA MEMBRANE RIESKE PROTEIN TITLE 2 PETC3 FROM SYNECHOCYSTIS PCC 6803 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME B6/F COMPLEX IRON-SULFUR SUBUNIT; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 24-133; COMPND 5 SYNONYM: RIESKE IRON-SULFUR PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP.; SOURCE 3 ORGANISM_TAXID: 1111708; SOURCE 4 STRAIN: PCC 6803 / KAZUSA; SOURCE 5 GENE: PETC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PASK-IBA37 KEYWDS PETC3, SLL1182, RIESKE PROTEIN, 2FE-2S CLUSTER, OXIDOREDUCTASE, KEYWDS 2 ELECTRON TRANSPORT, PLASMA MEMBRANE, LIPOPROTEIN, CYANOBACTERIA, KEYWDS 3 SYNECHOCYSTIS PCC 6803, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.VEIT,K.TAKEDA,K.MIKI,M.ROEGNER REVDAT 5 08-NOV-23 5CXM 1 LINK REVDAT 4 19-FEB-20 5CXM 1 REMARK REVDAT 3 22-FEB-17 5CXM 1 JRNL REVDAT 2 05-OCT-16 5CXM 1 JRNL REVDAT 1 03-AUG-16 5CXM 0 JRNL AUTH S.VEIT,K.TAKEDA,Y.TSUNOYAMA,F.BAYMANN,R.NEVO,Z.REICH, JRNL AUTH 2 M.ROGNER,K.MIKI,S.REXROTH JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERISATION OF THE JRNL TITL 2 CYANOBACTERIAL PETC3 RIESKE PROTEIN FAMILY. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1857 1879 2016 JRNL REFN ISSN 0006-3002 JRNL PMID 27663073 JRNL DOI 10.1016/J.BBABIO.2016.09.007 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 908155.030 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 38191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1894 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4909 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 267 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2848 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 291 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.28000 REMARK 3 B22 (A**2) : 1.43000 REMARK 3 B33 (A**2) : -2.71000 REMARK 3 B12 (A**2) : -0.62000 REMARK 3 B13 (A**2) : 0.25000 REMARK 3 B23 (A**2) : -1.13000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.09 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 2.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.010 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.45 REMARK 3 BSOL : 44.31 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : FES_RIESKE01.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : SO4.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : FES_RIESKE01.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : SO4.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 5CXM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212279. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38205 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2E74 REMARK 200 REMARK 200 REMARK: PLATE-LIKE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9MM NISOX6H2O, 90MM TRIS 22.5% (W/V) REMARK 280 PEG-MME 2K, 10MM SPERMIDINE, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 24 REMARK 465 GLY A 25 REMARK 465 GLY A 26 REMARK 465 ASN A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 ASN A 30 REMARK 465 GLY A 31 REMARK 465 GLN A 32 REMARK 465 GLY A 33 REMARK 465 GLN A 34 REMARK 465 PHE B 24 REMARK 465 GLY B 25 REMARK 465 GLY B 26 REMARK 465 ASN B 27 REMARK 465 SER B 28 REMARK 465 SER B 29 REMARK 465 ASN B 30 REMARK 465 GLY B 31 REMARK 465 GLN B 32 REMARK 465 GLY B 33 REMARK 465 GLN B 34 REMARK 465 PHE C 24 REMARK 465 GLY C 25 REMARK 465 GLY C 26 REMARK 465 ASN C 27 REMARK 465 SER C 28 REMARK 465 SER C 29 REMARK 465 ASN C 30 REMARK 465 GLY C 31 REMARK 465 GLN C 32 REMARK 465 GLY C 33 REMARK 465 GLN C 34 REMARK 465 PHE D 24 REMARK 465 GLY D 25 REMARK 465 GLY D 26 REMARK 465 ASN D 27 REMARK 465 SER D 28 REMARK 465 SER D 29 REMARK 465 ASN D 30 REMARK 465 GLY D 31 REMARK 465 GLN D 32 REMARK 465 GLY D 33 REMARK 465 GLN D 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NI NI A 203 O HOH B 301 1.47 REMARK 500 NI NI C 203 O HOH C 305 1.53 REMARK 500 NI NI A 202 O HOH B 314 1.56 REMARK 500 NI NI C 202 O HOH D 303 1.59 REMARK 500 NI NI A 202 O HOH B 312 1.60 REMARK 500 NI NI C 202 O HOH C 312 1.61 REMARK 500 NI NI A 203 O HOH A 316 1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 75 5.78 -68.70 REMARK 500 HIS A 79 -73.94 -86.43 REMARK 500 ASN A 127 -19.84 74.93 REMARK 500 HIS B 79 -72.67 -84.99 REMARK 500 ASN B 127 -5.82 71.17 REMARK 500 ASN C 64 40.65 -143.00 REMARK 500 HIS C 79 -74.04 -91.26 REMARK 500 ASN C 127 -10.77 70.34 REMARK 500 HIS D 79 -73.91 -88.29 REMARK 500 ASN D 127 -7.96 68.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 201 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 77 SG REMARK 620 2 FES A 201 S1 109.5 REMARK 620 3 FES A 201 S2 111.4 106.9 REMARK 620 4 CYS A 95 SG 112.6 111.1 105.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 201 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 ND1 REMARK 620 2 FES A 201 S1 111.4 REMARK 620 3 FES A 201 S2 115.2 106.0 REMARK 620 4 HIS A 98 ND1 99.4 114.8 110.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 202 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 HOH A 360 O 99.6 REMARK 620 3 HIS B 98 NE2 88.2 172.2 REMARK 620 4 HOH B 361 O 170.6 78.0 94.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 203 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 98 NE2 REMARK 620 2 HOH A 357 O 92.0 REMARK 620 3 HIS B 79 NE2 89.3 175.1 REMARK 620 4 HOH B 354 O 177.1 89.2 89.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 201 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 77 SG REMARK 620 2 FES B 201 S1 110.2 REMARK 620 3 FES B 201 S2 113.6 106.2 REMARK 620 4 CYS B 95 SG 113.0 108.0 105.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 201 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 79 ND1 REMARK 620 2 FES B 201 S1 113.2 REMARK 620 3 FES B 201 S2 114.5 106.1 REMARK 620 4 HIS B 98 ND1 101.3 116.0 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES C 201 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 77 SG REMARK 620 2 FES C 201 S1 108.9 REMARK 620 3 FES C 201 S2 113.0 106.6 REMARK 620 4 CYS C 95 SG 111.3 110.5 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES C 201 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 79 ND1 REMARK 620 2 FES C 201 S1 112.7 REMARK 620 3 FES C 201 S2 112.3 106.4 REMARK 620 4 HIS C 98 ND1 100.6 117.0 107.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 202 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 79 NE2 REMARK 620 2 HOH C 368 O 97.5 REMARK 620 3 HIS D 98 NE2 87.0 171.9 REMARK 620 4 HOH D 354 O 170.1 75.7 100.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 203 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 98 NE2 REMARK 620 2 HOH C 329 O 93.8 REMARK 620 3 HOH C 370 O 97.4 84.6 REMARK 620 4 HIS D 79 NE2 86.4 92.7 175.4 REMARK 620 5 HOH D 353 O 176.9 84.2 80.1 96.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES D 201 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 77 SG REMARK 620 2 FES D 201 S1 109.7 REMARK 620 3 FES D 201 S2 113.8 105.8 REMARK 620 4 CYS D 95 SG 111.4 110.1 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES D 201 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 79 ND1 REMARK 620 2 FES D 201 S1 110.4 REMARK 620 3 FES D 201 S2 113.8 106.2 REMARK 620 4 HIS D 98 ND1 101.7 117.1 107.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FES A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FES B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FES C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FES D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 202 DBREF 5CXM A 24 133 UNP P74174 P74174_SYNY3 24 133 DBREF 5CXM B 24 133 UNP P74174 P74174_SYNY3 24 133 DBREF 5CXM C 24 133 UNP P74174 P74174_SYNY3 24 133 DBREF 5CXM D 24 133 UNP P74174 P74174_SYNY3 24 133 SEQRES 1 A 110 PHE GLY GLY ASN SER SER ASN GLY GLN GLY GLN THR VAL SEQRES 2 A 110 ASN VAL GLY THR MET ALA ASP LEU LYS ALA LYS GLY GLU SEQRES 3 A 110 LEU LYS GLY ASN THR PRO LYS GLY PRO VAL THR VAL VAL SEQRES 4 A 110 PRO ASN GLY ASN SER GLY GLN ILE SER ALA VAL ASN PRO SEQRES 5 A 110 THR CYS THR HIS ASN GLY CYS GLN VAL ASN TRP LYS LYS SEQRES 6 A 110 ALA ASN GLY LYS PHE VAL CYS PRO CYS HIS GLY ALA GLU SEQRES 7 A 110 PHE ALA ALA THR GLY LYS VAL LEU LYS GLY PRO ALA ILE SEQRES 8 A 110 ARG ASP LEU PRO THR TYR ALA THR GLN VAL SER GLY ASN SEQRES 9 A 110 ASN ILE LEU VAL LYS ALA SEQRES 1 B 110 PHE GLY GLY ASN SER SER ASN GLY GLN GLY GLN THR VAL SEQRES 2 B 110 ASN VAL GLY THR MET ALA ASP LEU LYS ALA LYS GLY GLU SEQRES 3 B 110 LEU LYS GLY ASN THR PRO LYS GLY PRO VAL THR VAL VAL SEQRES 4 B 110 PRO ASN GLY ASN SER GLY GLN ILE SER ALA VAL ASN PRO SEQRES 5 B 110 THR CYS THR HIS ASN GLY CYS GLN VAL ASN TRP LYS LYS SEQRES 6 B 110 ALA ASN GLY LYS PHE VAL CYS PRO CYS HIS GLY ALA GLU SEQRES 7 B 110 PHE ALA ALA THR GLY LYS VAL LEU LYS GLY PRO ALA ILE SEQRES 8 B 110 ARG ASP LEU PRO THR TYR ALA THR GLN VAL SER GLY ASN SEQRES 9 B 110 ASN ILE LEU VAL LYS ALA SEQRES 1 C 110 PHE GLY GLY ASN SER SER ASN GLY GLN GLY GLN THR VAL SEQRES 2 C 110 ASN VAL GLY THR MET ALA ASP LEU LYS ALA LYS GLY GLU SEQRES 3 C 110 LEU LYS GLY ASN THR PRO LYS GLY PRO VAL THR VAL VAL SEQRES 4 C 110 PRO ASN GLY ASN SER GLY GLN ILE SER ALA VAL ASN PRO SEQRES 5 C 110 THR CYS THR HIS ASN GLY CYS GLN VAL ASN TRP LYS LYS SEQRES 6 C 110 ALA ASN GLY LYS PHE VAL CYS PRO CYS HIS GLY ALA GLU SEQRES 7 C 110 PHE ALA ALA THR GLY LYS VAL LEU LYS GLY PRO ALA ILE SEQRES 8 C 110 ARG ASP LEU PRO THR TYR ALA THR GLN VAL SER GLY ASN SEQRES 9 C 110 ASN ILE LEU VAL LYS ALA SEQRES 1 D 110 PHE GLY GLY ASN SER SER ASN GLY GLN GLY GLN THR VAL SEQRES 2 D 110 ASN VAL GLY THR MET ALA ASP LEU LYS ALA LYS GLY GLU SEQRES 3 D 110 LEU LYS GLY ASN THR PRO LYS GLY PRO VAL THR VAL VAL SEQRES 4 D 110 PRO ASN GLY ASN SER GLY GLN ILE SER ALA VAL ASN PRO SEQRES 5 D 110 THR CYS THR HIS ASN GLY CYS GLN VAL ASN TRP LYS LYS SEQRES 6 D 110 ALA ASN GLY LYS PHE VAL CYS PRO CYS HIS GLY ALA GLU SEQRES 7 D 110 PHE ALA ALA THR GLY LYS VAL LEU LYS GLY PRO ALA ILE SEQRES 8 D 110 ARG ASP LEU PRO THR TYR ALA THR GLN VAL SER GLY ASN SEQRES 9 D 110 ASN ILE LEU VAL LYS ALA HET FES A 201 4 HET NI A 202 1 HET NI A 203 1 HET FES B 201 4 HET FES C 201 4 HET NI C 202 1 HET NI C 203 1 HET FES D 201 4 HET SO4 D 202 5 HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM NI NICKEL (II) ION HETNAM SO4 SULFATE ION FORMUL 5 FES 4(FE2 S2) FORMUL 6 NI 4(NI 2+) FORMUL 13 SO4 O4 S 2- FORMUL 14 HOH *291(H2 O) HELIX 1 AA1 MET A 41 GLY A 48 1 8 HELIX 2 AA2 LYS A 88 ASN A 90 5 3 HELIX 3 AA3 MET B 41 GLY B 48 1 8 HELIX 4 AA4 MET C 41 GLY C 48 1 8 HELIX 5 AA5 MET D 41 GLY D 48 1 8 SHEET 1 AA1 3 VAL A 36 THR A 40 0 SHEET 2 AA1 3 ASN A 128 VAL A 131 -1 O ILE A 129 N GLY A 39 SHEET 3 AA1 3 THR A 122 SER A 125 -1 N GLN A 123 O LEU A 130 SHEET 1 AA2 4 LEU A 50 THR A 54 0 SHEET 2 AA2 4 GLY A 57 PRO A 63 -1 O VAL A 61 N LEU A 50 SHEET 3 AA2 4 ILE A 70 VAL A 73 -1 O SER A 71 N VAL A 62 SHEET 4 AA2 4 THR A 119 TYR A 120 -1 O TYR A 120 N ALA A 72 SHEET 1 AA3 4 ASN A 85 LYS A 87 0 SHEET 2 AA3 4 LYS A 92 VAL A 94 -1 O LYS A 92 N LYS A 87 SHEET 3 AA3 4 GLU A 101 ALA A 103 -1 O PHE A 102 N PHE A 93 SHEET 4 AA3 4 VAL A 108 LYS A 110 -1 O LEU A 109 N GLU A 101 SHEET 1 AA4 6 VAL B 36 THR B 40 0 SHEET 2 AA4 6 ASN B 128 LYS B 132 -1 O ILE B 129 N GLY B 39 SHEET 3 AA4 6 THR B 119 SER B 125 -1 N GLN B 123 O LEU B 130 SHEET 4 AA4 6 ILE B 70 VAL B 73 -1 N ALA B 72 O TYR B 120 SHEET 5 AA4 6 GLY B 57 PRO B 63 -1 N VAL B 62 O SER B 71 SHEET 6 AA4 6 LEU B 50 THR B 54 -1 N LEU B 50 O VAL B 61 SHEET 1 AA5 4 ASN B 85 LYS B 87 0 SHEET 2 AA5 4 LYS B 92 VAL B 94 -1 O LYS B 92 N LYS B 87 SHEET 3 AA5 4 GLU B 101 ALA B 103 -1 O PHE B 102 N PHE B 93 SHEET 4 AA5 4 VAL B 108 LYS B 110 -1 O LEU B 109 N GLU B 101 SHEET 1 AA6 6 VAL C 36 THR C 40 0 SHEET 2 AA6 6 ASN C 128 LYS C 132 -1 O ILE C 129 N GLY C 39 SHEET 3 AA6 6 THR C 119 SER C 125 -1 N GLN C 123 O LEU C 130 SHEET 4 AA6 6 ILE C 70 VAL C 73 -1 N ALA C 72 O TYR C 120 SHEET 5 AA6 6 GLY C 57 PRO C 63 -1 N VAL C 62 O SER C 71 SHEET 6 AA6 6 LEU C 50 THR C 54 -1 N LEU C 50 O VAL C 61 SHEET 1 AA7 4 ASN C 85 LYS C 87 0 SHEET 2 AA7 4 LYS C 92 VAL C 94 -1 O LYS C 92 N LYS C 87 SHEET 3 AA7 4 GLU C 101 PHE C 102 -1 O PHE C 102 N PHE C 93 SHEET 4 AA7 4 VAL C 108 LYS C 110 -1 O LEU C 109 N GLU C 101 SHEET 1 AA8 6 VAL D 36 THR D 40 0 SHEET 2 AA8 6 ASN D 128 LYS D 132 -1 O ILE D 129 N GLY D 39 SHEET 3 AA8 6 THR D 119 SER D 125 -1 N GLN D 123 O LEU D 130 SHEET 4 AA8 6 ILE D 70 VAL D 73 -1 N ALA D 72 O TYR D 120 SHEET 5 AA8 6 GLY D 57 PRO D 63 -1 N VAL D 62 O SER D 71 SHEET 6 AA8 6 LEU D 50 THR D 54 -1 N LEU D 50 O VAL D 61 SHEET 1 AA9 4 ASN D 85 LYS D 87 0 SHEET 2 AA9 4 LYS D 92 VAL D 94 -1 O VAL D 94 N ASN D 85 SHEET 3 AA9 4 GLU D 101 ALA D 103 -1 O PHE D 102 N PHE D 93 SHEET 4 AA9 4 VAL D 108 LYS D 110 -1 O LEU D 109 N GLU D 101 SSBOND 1 CYS A 82 CYS A 97 1555 1555 2.01 SSBOND 2 CYS B 82 CYS B 97 1555 1555 2.01 SSBOND 3 CYS C 82 CYS C 97 1555 1555 2.01 SSBOND 4 CYS D 82 CYS D 97 1555 1555 2.01 LINK SG CYS A 77 FE1 FES A 201 1555 1555 2.29 LINK ND1 HIS A 79 FE2 FES A 201 1555 1555 2.05 LINK NE2 HIS A 79 NI NI A 202 1555 1555 2.05 LINK SG CYS A 95 FE1 FES A 201 1555 1555 2.30 LINK ND1 HIS A 98 FE2 FES A 201 1555 1555 2.13 LINK NE2 HIS A 98 NI NI A 203 1555 1555 1.98 LINK NI NI A 202 O HOH A 360 1555 1555 2.16 LINK NI NI A 202 NE2 HIS B 98 1555 1555 1.95 LINK NI NI A 202 O HOH B 361 1555 1555 2.28 LINK NI NI A 203 O HOH A 357 1555 1555 2.28 LINK NI NI A 203 NE2 HIS B 79 1555 1555 2.04 LINK NI NI A 203 O HOH B 354 1555 1555 2.11 LINK SG CYS B 77 FE1 FES B 201 1555 1555 2.25 LINK ND1 HIS B 79 FE2 FES B 201 1555 1555 2.07 LINK SG CYS B 95 FE1 FES B 201 1555 1555 2.31 LINK ND1 HIS B 98 FE2 FES B 201 1555 1555 2.08 LINK SG CYS C 77 FE1 FES C 201 1555 1555 2.26 LINK ND1 HIS C 79 FE2 FES C 201 1555 1555 2.03 LINK NE2 HIS C 79 NI NI C 202 1555 1555 2.07 LINK SG CYS C 95 FE1 FES C 201 1555 1555 2.29 LINK ND1 HIS C 98 FE2 FES C 201 1555 1555 2.11 LINK NE2 HIS C 98 NI NI C 203 1555 1555 1.98 LINK NI NI C 202 O HOH C 368 1555 1555 2.20 LINK NI NI C 202 NE2 HIS D 98 1555 1555 1.93 LINK NI NI C 202 O HOH D 354 1555 1555 2.18 LINK NI NI C 203 O HOH C 329 1555 1555 1.71 LINK NI NI C 203 O HOH C 370 1555 1555 2.33 LINK NI NI C 203 NE2 HIS D 79 1555 1555 2.11 LINK NI NI C 203 O HOH D 353 1555 1555 2.14 LINK SG CYS D 77 FE1 FES D 201 1555 1555 2.28 LINK ND1 HIS D 79 FE2 FES D 201 1555 1555 2.00 LINK SG CYS D 95 FE1 FES D 201 1555 1555 2.29 LINK ND1 HIS D 98 FE2 FES D 201 1555 1555 2.07 CISPEP 1 GLY A 111 PRO A 112 0 0.85 CISPEP 2 GLY B 111 PRO B 112 0 1.01 CISPEP 3 GLY C 111 PRO C 112 0 1.21 CISPEP 4 GLY D 111 PRO D 112 0 0.96 SITE 1 AC1 7 CYS A 77 HIS A 79 ASN A 80 CYS A 95 SITE 2 AC1 7 HIS A 98 ALA A 100 PRO A 112 SITE 1 AC2 6 HIS A 79 HOH A 360 HIS B 98 HOH B 312 SITE 2 AC2 6 HOH B 314 HOH B 361 SITE 1 AC3 6 HIS A 98 HOH A 316 HOH A 357 HIS B 79 SITE 2 AC3 6 HOH B 301 HOH B 354 SITE 1 AC4 6 CYS B 77 HIS B 79 ASN B 80 CYS B 95 SITE 2 AC4 6 HIS B 98 ALA B 100 SITE 1 AC5 6 CYS C 77 HIS C 79 ASN C 80 CYS C 95 SITE 2 AC5 6 HIS C 98 ALA C 100 SITE 1 AC6 6 HIS C 79 HOH C 312 HOH C 368 HIS D 98 SITE 2 AC6 6 HOH D 303 HOH D 354 SITE 1 AC7 6 HIS C 98 HOH C 305 HOH C 329 HOH C 370 SITE 2 AC7 6 HIS D 79 HOH D 353 SITE 1 AC8 7 CYS D 77 HIS D 79 ASN D 80 CYS D 95 SITE 2 AC8 7 HIS D 98 ALA D 100 PRO D 112 SITE 1 AC9 5 GLY A 65 ASN A 66 SER A 67 GLN A 69 SITE 2 AC9 5 LYS D 88 CRYST1 21.747 55.011 80.709 80.44 89.87 84.11 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.045983 -0.004748 0.000700 0.00000 SCALE2 0.000000 0.018275 -0.003091 0.00000 SCALE3 0.000000 0.000000 0.012566 0.00000