HEADER TRANSFERASE/TRANSFERASE INHIBITOR 29-JUL-15 5CXY TITLE STRUCTURE OF A GLYCOSYLTRANSFERASE IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIA-ALPHA-2,3-GAL-BETA-1,4-GLCNAC-R:ALPHA 2,8- COMPND 3 SIALYLTRANSFERASE; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 81-380; COMPND 6 SYNONYM: ALPHA-2,8-SIALYLTRANSFERASE 8C,8-SIALYLTRANSFERASE III,ST8 COMPND 7 ALPHA-N-ACETYL-NEURAMINIDE ALPHA-2,8-SIALYLTRANSFERASE 3, COMPND 8 SIALYLTRANSFERASE 8C,SIAT8-C,SIALYLTRANSFERASE ST8SIA III,ST8SIAIII; COMPND 9 EC: 2.4.99.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ST8SIA3, SIAT8C; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PFBOH; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFHMSP LIC N KEYWDS SIALYLTRANSFERASE, INHIBITOR, POLYSIALYLTRANSFERASE, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.VOLKERS,N.C.J.STRYNADKA REVDAT 5 30-OCT-24 5CXY 1 REMARK REVDAT 4 27-SEP-23 5CXY 1 HETSYN LINK REVDAT 3 29-JUL-20 5CXY 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 22-NOV-17 5CXY 1 REMARK REVDAT 1 07-SEP-16 5CXY 0 JRNL AUTH G.VOLKERS,N.C.J.STRYNADKA JRNL TITL TO BE PUBLISHED. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2407 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3376 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4805 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 289 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.58000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : -1.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.279 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5258 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4815 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7155 ; 1.890 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11070 ; 1.474 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 582 ; 6.303 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 248 ;36.725 ;23.347 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 830 ;16.441 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.329 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 795 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5752 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1338 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2334 ; 3.481 ; 3.438 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2333 ; 3.472 ; 3.435 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2914 ; 5.133 ; 5.135 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 89 380 B 89 380 33152 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5CXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212351. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.502 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48673 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 52.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.60400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5BO6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 130 MM (NH)4H2PO4, 22% PEG2000 AND 50 REMARK 280 MM PIPES PH 7.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.42000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.39000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.32000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.39000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.42000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.32000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 58 REMARK 465 PRO A 59 REMARK 465 GLU A 60 REMARK 465 HIS A 61 REMARK 465 HIS A 62 REMARK 465 HIS A 63 REMARK 465 HIS A 64 REMARK 465 HIS A 65 REMARK 465 HIS A 66 REMARK 465 ASP A 67 REMARK 465 TYR A 68 REMARK 465 ASP A 69 REMARK 465 ILE A 70 REMARK 465 PRO A 71 REMARK 465 THR A 72 REMARK 465 THR A 73 REMARK 465 GLU A 74 REMARK 465 ASN A 75 REMARK 465 LEU A 76 REMARK 465 TYR A 77 REMARK 465 PHE A 78 REMARK 465 GLN A 79 REMARK 465 GLY A 80 REMARK 465 GLN A 81 REMARK 465 GLU A 82 REMARK 465 LEU A 83 REMARK 465 GLN A 84 REMARK 465 GLU A 85 REMARK 465 LYS A 86 REMARK 465 PRO A 87 REMARK 465 SER A 88 REMARK 465 ALA B 58 REMARK 465 PRO B 59 REMARK 465 GLU B 60 REMARK 465 HIS B 61 REMARK 465 HIS B 62 REMARK 465 HIS B 63 REMARK 465 HIS B 64 REMARK 465 HIS B 65 REMARK 465 HIS B 66 REMARK 465 ASP B 67 REMARK 465 TYR B 68 REMARK 465 ASP B 69 REMARK 465 ILE B 70 REMARK 465 PRO B 71 REMARK 465 THR B 72 REMARK 465 THR B 73 REMARK 465 GLU B 74 REMARK 465 ASN B 75 REMARK 465 LEU B 76 REMARK 465 TYR B 77 REMARK 465 PHE B 78 REMARK 465 GLN B 79 REMARK 465 GLY B 80 REMARK 465 GLN B 81 REMARK 465 GLU B 82 REMARK 465 LEU B 83 REMARK 465 GLN B 84 REMARK 465 GLU B 85 REMARK 465 LYS B 86 REMARK 465 PRO B 87 REMARK 465 SER B 88 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 TRP A 350 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 350 CZ3 CH2 REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 LYS B 297 CG CD CE NZ REMARK 470 THR B 347 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 94 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 94 NE - CZ - NH1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 94 NE - CZ - NH2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG A 199 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 239 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 268 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 268 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 268 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP B 333 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 340 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 340 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 HIS B 354 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 160 -74.04 -70.31 REMARK 500 ASP A 239 -125.82 52.90 REMARK 500 TRP A 322 85.54 179.63 REMARK 500 PRO A 323 42.68 -87.66 REMARK 500 ASN B 160 -78.70 -77.43 REMARK 500 ASP B 239 -129.32 56.52 REMARK 500 TRP B 322 85.99 178.60 REMARK 500 PRO B 323 45.31 -86.33 REMARK 500 LYS B 341 -85.36 -100.18 REMARK 500 THR B 348 -169.02 -121.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 353 HIS B 354 -147.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BO6 RELATED DB: PDB REMARK 900 5BO6 CONTAINS THE SAME PROTEIN IN ITS APO-FORM. DBREF 5CXY A 81 380 UNP O43173 SIA8C_HUMAN 81 380 DBREF 5CXY B 81 380 UNP O43173 SIA8C_HUMAN 81 380 SEQADV 5CXY ALA A 58 UNP O43173 EXPRESSION TAG SEQADV 5CXY PRO A 59 UNP O43173 EXPRESSION TAG SEQADV 5CXY GLU A 60 UNP O43173 EXPRESSION TAG SEQADV 5CXY HIS A 61 UNP O43173 EXPRESSION TAG SEQADV 5CXY HIS A 62 UNP O43173 EXPRESSION TAG SEQADV 5CXY HIS A 63 UNP O43173 EXPRESSION TAG SEQADV 5CXY HIS A 64 UNP O43173 EXPRESSION TAG SEQADV 5CXY HIS A 65 UNP O43173 EXPRESSION TAG SEQADV 5CXY HIS A 66 UNP O43173 EXPRESSION TAG SEQADV 5CXY ASP A 67 UNP O43173 EXPRESSION TAG SEQADV 5CXY TYR A 68 UNP O43173 EXPRESSION TAG SEQADV 5CXY ASP A 69 UNP O43173 EXPRESSION TAG SEQADV 5CXY ILE A 70 UNP O43173 EXPRESSION TAG SEQADV 5CXY PRO A 71 UNP O43173 EXPRESSION TAG SEQADV 5CXY THR A 72 UNP O43173 EXPRESSION TAG SEQADV 5CXY THR A 73 UNP O43173 EXPRESSION TAG SEQADV 5CXY GLU A 74 UNP O43173 EXPRESSION TAG SEQADV 5CXY ASN A 75 UNP O43173 EXPRESSION TAG SEQADV 5CXY LEU A 76 UNP O43173 EXPRESSION TAG SEQADV 5CXY TYR A 77 UNP O43173 EXPRESSION TAG SEQADV 5CXY PHE A 78 UNP O43173 EXPRESSION TAG SEQADV 5CXY GLN A 79 UNP O43173 EXPRESSION TAG SEQADV 5CXY GLY A 80 UNP O43173 EXPRESSION TAG SEQADV 5CXY ALA B 58 UNP O43173 EXPRESSION TAG SEQADV 5CXY PRO B 59 UNP O43173 EXPRESSION TAG SEQADV 5CXY GLU B 60 UNP O43173 EXPRESSION TAG SEQADV 5CXY HIS B 61 UNP O43173 EXPRESSION TAG SEQADV 5CXY HIS B 62 UNP O43173 EXPRESSION TAG SEQADV 5CXY HIS B 63 UNP O43173 EXPRESSION TAG SEQADV 5CXY HIS B 64 UNP O43173 EXPRESSION TAG SEQADV 5CXY HIS B 65 UNP O43173 EXPRESSION TAG SEQADV 5CXY HIS B 66 UNP O43173 EXPRESSION TAG SEQADV 5CXY ASP B 67 UNP O43173 EXPRESSION TAG SEQADV 5CXY TYR B 68 UNP O43173 EXPRESSION TAG SEQADV 5CXY ASP B 69 UNP O43173 EXPRESSION TAG SEQADV 5CXY ILE B 70 UNP O43173 EXPRESSION TAG SEQADV 5CXY PRO B 71 UNP O43173 EXPRESSION TAG SEQADV 5CXY THR B 72 UNP O43173 EXPRESSION TAG SEQADV 5CXY THR B 73 UNP O43173 EXPRESSION TAG SEQADV 5CXY GLU B 74 UNP O43173 EXPRESSION TAG SEQADV 5CXY ASN B 75 UNP O43173 EXPRESSION TAG SEQADV 5CXY LEU B 76 UNP O43173 EXPRESSION TAG SEQADV 5CXY TYR B 77 UNP O43173 EXPRESSION TAG SEQADV 5CXY PHE B 78 UNP O43173 EXPRESSION TAG SEQADV 5CXY GLN B 79 UNP O43173 EXPRESSION TAG SEQADV 5CXY GLY B 80 UNP O43173 EXPRESSION TAG SEQRES 1 A 323 ALA PRO GLU HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE SEQRES 2 A 323 PRO THR THR GLU ASN LEU TYR PHE GLN GLY GLN GLU LEU SEQRES 3 A 323 GLN GLU LYS PRO SER LYS TRP LYS PHE ASN ARG THR ALA SEQRES 4 A 323 PHE LEU HIS GLN ARG GLN GLU ILE LEU GLN HIS VAL ASP SEQRES 5 A 323 VAL ILE LYS ASN PHE SER LEU THR LYS ASN SER VAL ARG SEQRES 6 A 323 ILE GLY GLN LEU MET HIS TYR ASP TYR SER SER HIS LYS SEQRES 7 A 323 TYR VAL PHE SER ILE SER ASN ASN PHE ARG SER LEU LEU SEQRES 8 A 323 PRO ASP VAL SER PRO ILE MET ASN LYS HIS TYR ASN ILE SEQRES 9 A 323 CYS ALA VAL VAL GLY ASN SER GLY ILE LEU THR GLY SER SEQRES 10 A 323 GLN CYS GLY GLN GLU ILE ASP LYS SER ASP PHE VAL PHE SEQRES 11 A 323 ARG CYS ASN PHE ALA PRO THR GLU ALA PHE GLN ARG ASP SEQRES 12 A 323 VAL GLY ARG LYS THR ASN LEU THR THR PHE ASN PRO SER SEQRES 13 A 323 ILE LEU GLU LYS TYR TYR ASN ASN LEU LEU THR ILE GLN SEQRES 14 A 323 ASP ARG ASN ASN PHE PHE LEU SER LEU LYS LYS LEU ASP SEQRES 15 A 323 GLY ALA ILE LEU TRP ILE PRO ALA PHE PHE PHE HIS THR SEQRES 16 A 323 SER ALA THR VAL THR ARG THR LEU VAL ASP PHE PHE VAL SEQRES 17 A 323 GLU HIS ARG GLY GLN LEU LYS VAL GLN LEU ALA TRP PRO SEQRES 18 A 323 GLY ASN ILE MET GLN HIS VAL ASN ARG TYR TRP LYS ASN SEQRES 19 A 323 LYS HIS LEU SER PRO LYS ARG LEU SER THR GLY ILE LEU SEQRES 20 A 323 MET TYR THR LEU ALA SER ALA ILE CYS GLU GLU ILE HIS SEQRES 21 A 323 LEU TYR GLY PHE TRP PRO PHE GLY PHE ASP PRO ASN THR SEQRES 22 A 323 ARG GLU ASP LEU PRO TYR HIS TYR TYR ASP LYS LYS GLY SEQRES 23 A 323 THR LYS PHE THR THR LYS TRP GLN GLU SER HIS GLN LEU SEQRES 24 A 323 PRO ALA GLU PHE GLN LEU LEU TYR ARG MET HIS GLY GLU SEQRES 25 A 323 GLY LEU THR LYS LEU THR LEU SER HIS CYS ALA SEQRES 1 B 323 ALA PRO GLU HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE SEQRES 2 B 323 PRO THR THR GLU ASN LEU TYR PHE GLN GLY GLN GLU LEU SEQRES 3 B 323 GLN GLU LYS PRO SER LYS TRP LYS PHE ASN ARG THR ALA SEQRES 4 B 323 PHE LEU HIS GLN ARG GLN GLU ILE LEU GLN HIS VAL ASP SEQRES 5 B 323 VAL ILE LYS ASN PHE SER LEU THR LYS ASN SER VAL ARG SEQRES 6 B 323 ILE GLY GLN LEU MET HIS TYR ASP TYR SER SER HIS LYS SEQRES 7 B 323 TYR VAL PHE SER ILE SER ASN ASN PHE ARG SER LEU LEU SEQRES 8 B 323 PRO ASP VAL SER PRO ILE MET ASN LYS HIS TYR ASN ILE SEQRES 9 B 323 CYS ALA VAL VAL GLY ASN SER GLY ILE LEU THR GLY SER SEQRES 10 B 323 GLN CYS GLY GLN GLU ILE ASP LYS SER ASP PHE VAL PHE SEQRES 11 B 323 ARG CYS ASN PHE ALA PRO THR GLU ALA PHE GLN ARG ASP SEQRES 12 B 323 VAL GLY ARG LYS THR ASN LEU THR THR PHE ASN PRO SER SEQRES 13 B 323 ILE LEU GLU LYS TYR TYR ASN ASN LEU LEU THR ILE GLN SEQRES 14 B 323 ASP ARG ASN ASN PHE PHE LEU SER LEU LYS LYS LEU ASP SEQRES 15 B 323 GLY ALA ILE LEU TRP ILE PRO ALA PHE PHE PHE HIS THR SEQRES 16 B 323 SER ALA THR VAL THR ARG THR LEU VAL ASP PHE PHE VAL SEQRES 17 B 323 GLU HIS ARG GLY GLN LEU LYS VAL GLN LEU ALA TRP PRO SEQRES 18 B 323 GLY ASN ILE MET GLN HIS VAL ASN ARG TYR TRP LYS ASN SEQRES 19 B 323 LYS HIS LEU SER PRO LYS ARG LEU SER THR GLY ILE LEU SEQRES 20 B 323 MET TYR THR LEU ALA SER ALA ILE CYS GLU GLU ILE HIS SEQRES 21 B 323 LEU TYR GLY PHE TRP PRO PHE GLY PHE ASP PRO ASN THR SEQRES 22 B 323 ARG GLU ASP LEU PRO TYR HIS TYR TYR ASP LYS LYS GLY SEQRES 23 B 323 THR LYS PHE THR THR LYS TRP GLN GLU SER HIS GLN LEU SEQRES 24 B 323 PRO ALA GLU PHE GLN LEU LEU TYR ARG MET HIS GLY GLU SEQRES 25 B 323 GLY LEU THR LYS LEU THR LEU SER HIS CYS ALA HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET FUC E 3 10 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET NAG H 1 14 HET NAG H 2 14 HET 55T A 411 36 HET NAG B 405 14 HET NAG B 406 14 HET 55T B 407 36 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM 55T 5'-O-[(R)-[(S)-[3-(ACETYLAMINO)PHENYL](PHOSPHONO) HETNAM 2 55T METHOXY](HYDROXY)PHOSPHORYL]CYTIDINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 14(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 5 FUC C6 H12 O5 FORMUL 9 55T 2(C18 H24 N4 O12 P2) FORMUL 13 HOH *135(H2 O) HELIX 1 AA1 ASN A 93 VAL A 108 1 16 HELIX 2 AA2 ASP A 109 PHE A 114 1 6 HELIX 3 AA3 THR A 117 VAL A 121 5 5 HELIX 4 AA4 SER A 141 LEU A 147 1 7 HELIX 5 AA5 SER A 168 THR A 172 5 5 HELIX 6 AA6 CYS A 176 LYS A 182 1 7 HELIX 7 AA7 THR A 194 ALA A 196 5 3 HELIX 8 AA8 PHE A 197 GLY A 202 1 6 HELIX 9 AA9 SER A 213 TYR A 219 1 7 HELIX 10 AB1 ASN A 220 LEU A 223 5 4 HELIX 11 AB2 THR A 224 LYS A 237 1 14 HELIX 12 AB3 PHE A 250 THR A 252 5 3 HELIX 13 AB4 SER A 253 HIS A 267 1 15 HELIX 14 AB5 ILE A 281 LYS A 292 1 12 HELIX 15 AB6 SER A 300 ILE A 312 1 13 HELIX 16 AB7 THR A 348 GLU A 352 5 5 HELIX 17 AB8 GLN A 355 GLU A 369 1 15 HELIX 18 AB9 ASN B 93 VAL B 108 1 16 HELIX 19 AC1 ASP B 109 PHE B 114 1 6 HELIX 20 AC2 THR B 117 VAL B 121 5 5 HELIX 21 AC3 SER B 141 LEU B 147 1 7 HELIX 22 AC4 SER B 168 THR B 172 5 5 HELIX 23 AC5 CYS B 176 LYS B 182 1 7 HELIX 24 AC6 THR B 194 ALA B 196 5 3 HELIX 25 AC7 PHE B 197 GLY B 202 1 6 HELIX 26 AC8 SER B 213 ASN B 220 1 8 HELIX 27 AC9 ASN B 221 LEU B 223 5 3 HELIX 28 AD1 THR B 224 LYS B 237 1 14 HELIX 29 AD2 PHE B 250 THR B 252 5 3 HELIX 30 AD3 SER B 253 HIS B 267 1 15 HELIX 31 AD4 ILE B 281 LYS B 292 1 12 HELIX 32 AD5 SER B 300 ILE B 312 1 13 HELIX 33 AD6 TRP B 350 HIS B 354 5 5 HELIX 34 AD7 GLN B 355 GLU B 369 1 15 SHEET 1 AA1 2 LEU A 126 MET A 127 0 SHEET 2 AA1 2 PHE A 138 SER A 139 -1 O PHE A 138 N MET A 127 SHEET 1 AA2 7 GLN A 274 ALA A 276 0 SHEET 2 AA2 7 ILE A 242 TRP A 244 1 N LEU A 243 O GLN A 274 SHEET 3 AA2 7 LEU A 207 THR A 209 1 N THR A 208 O TRP A 244 SHEET 4 AA2 7 PHE A 185 ARG A 188 1 N ARG A 188 O LEU A 207 SHEET 5 AA2 7 TYR A 159 VAL A 165 1 N VAL A 165 O PHE A 187 SHEET 6 AA2 7 CYS A 313 TYR A 319 1 O HIS A 317 N CYS A 162 SHEET 7 AA2 7 LYS A 373 LEU A 374 1 O LYS A 373 N LEU A 318 SHEET 1 AA3 2 LEU B 126 MET B 127 0 SHEET 2 AA3 2 PHE B 138 SER B 139 -1 O PHE B 138 N MET B 127 SHEET 1 AA4 7 GLN B 274 ALA B 276 0 SHEET 2 AA4 7 ILE B 242 TRP B 244 1 N LEU B 243 O GLN B 274 SHEET 3 AA4 7 LEU B 207 THR B 209 1 N THR B 208 O TRP B 244 SHEET 4 AA4 7 PHE B 185 ARG B 188 1 N ARG B 188 O LEU B 207 SHEET 5 AA4 7 TYR B 159 VAL B 165 1 N VAL B 165 O PHE B 187 SHEET 6 AA4 7 CYS B 313 TYR B 319 1 O HIS B 317 N CYS B 162 SHEET 7 AA4 7 LYS B 373 LEU B 374 1 O LYS B 373 N LEU B 318 SSBOND 1 CYS A 162 CYS A 313 1555 1555 2.01 SSBOND 2 CYS A 176 CYS A 379 1555 1555 2.09 SSBOND 3 CYS B 162 CYS B 313 1555 1555 1.98 SSBOND 4 CYS B 176 CYS B 379 1555 1555 2.07 LINK ND2 ASN A 93 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN A 113 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 160 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN A 206 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN B 93 C1 NAG B 405 1555 1555 1.48 LINK ND2 ASN B 113 C1 NAG G 1 1555 1555 1.40 LINK ND2 ASN B 160 C1 NAG B 406 1555 1555 1.48 LINK ND2 ASN B 206 C1 NAG H 1 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.48 LINK O6 NAG E 1 C1 FUC E 3 1555 1555 1.47 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.40 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.45 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.43 CRYST1 72.840 96.640 124.780 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013729 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010348 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008014 0.00000