HEADER TRANSFERASE 30-JUL-15 5CYG TITLE CRYSTAL STRUCTURE OF ISOFORM 2 OF URIDINE PHOSPHORYLASE FROM TITLE 2 SCHISTOSOMA MANSONI APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE URIDINE PHOSPHORYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.2.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6183; SOURCE 5 GENE: SMP_082420; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.ROMANELLO,J.R.TORINI,R.DEMARCO,H.M.PEREIRA REVDAT 6 27-SEP-23 5CYG 1 REMARK REVDAT 5 01-JAN-20 5CYG 1 REMARK REVDAT 4 17-APR-19 5CYG 1 REMARK REVDAT 3 22-NOV-17 5CYG 1 JRNL REMARK REVDAT 2 25-MAY-16 5CYG 1 JRNL REVDAT 1 16-MAR-16 5CYG 0 JRNL AUTH A.M.DA SILVA NETO,J.R.TORINI DE SOUZA,L.ROMANELLO,A.CASSAGO, JRNL AUTH 2 V.H.SERRAO,R.DEMARCO,J.BRANDAO-NETO,R.C.GARRATT,H.D.PEREIRA JRNL TITL ANALYSIS OF TWO SCHISTOSOMA MANSONI URIDINE PHOSPHORYLASES JRNL TITL 2 ISOFORMS SUGGESTS THE EMERGENCE OF A PROTEIN WITH A JRNL TITL 3 NON-CANONICAL FUNCTION. JRNL REF BIOCHIMIE V. 125 12 2016 JRNL REFN ISSN 0300-9084 JRNL PMID 26898674 JRNL DOI 10.1016/J.BIOCHI.2016.02.007 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 32882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8284 - 4.5991 0.98 2908 154 0.1638 0.2149 REMARK 3 2 4.5991 - 3.6579 0.97 2759 145 0.1593 0.1980 REMARK 3 3 3.6579 - 3.1977 0.97 2735 144 0.1837 0.2236 REMARK 3 4 3.1977 - 2.9063 0.96 2704 142 0.2203 0.2581 REMARK 3 5 2.9063 - 2.6986 0.97 2709 143 0.2323 0.2929 REMARK 3 6 2.6986 - 2.5398 0.96 2651 139 0.2275 0.2922 REMARK 3 7 2.5398 - 2.4128 0.95 2638 139 0.2280 0.3076 REMARK 3 8 2.4128 - 2.3080 0.94 2567 135 0.2354 0.2727 REMARK 3 9 2.3080 - 2.2192 0.92 2547 134 0.2213 0.3013 REMARK 3 10 2.2192 - 2.1428 0.91 2515 133 0.2149 0.2415 REMARK 3 11 2.1428 - 2.0758 0.90 2458 129 0.2190 0.2816 REMARK 3 12 2.0758 - 2.0166 0.74 2046 108 0.2336 0.2753 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4470 REMARK 3 ANGLE : 0.708 6045 REMARK 3 CHIRALITY : 0.024 708 REMARK 3 PLANARITY : 0.002 771 REMARK 3 DIHEDRAL : 12.044 1613 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7780 0.0646 7.7808 REMARK 3 T TENSOR REMARK 3 T11: 0.1840 T22: 0.1347 REMARK 3 T33: 0.1182 T12: 0.0292 REMARK 3 T13: -0.0150 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 1.6618 L22: 1.4859 REMARK 3 L33: 1.3790 L12: 0.0321 REMARK 3 L13: 0.0281 L23: -0.7745 REMARK 3 S TENSOR REMARK 3 S11: -0.0906 S12: -0.0826 S13: -0.0336 REMARK 3 S21: 0.1001 S22: 0.0932 S23: 0.0581 REMARK 3 S31: 0.0695 S32: -0.1503 S33: -0.0076 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2923 13.5491 4.9433 REMARK 3 T TENSOR REMARK 3 T11: 0.2792 T22: 0.1540 REMARK 3 T33: 0.2282 T12: -0.0460 REMARK 3 T13: -0.0337 T23: -0.0479 REMARK 3 L TENSOR REMARK 3 L11: 3.2910 L22: 1.9779 REMARK 3 L33: 4.1979 L12: -0.6589 REMARK 3 L13: 1.8199 L23: -1.1288 REMARK 3 S TENSOR REMARK 3 S11: -0.1294 S12: -0.2586 S13: 0.5233 REMARK 3 S21: 0.2501 S22: -0.1403 S23: -0.2973 REMARK 3 S31: -0.2176 S32: -0.0991 S33: 0.1636 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8776 6.4030 -5.0184 REMARK 3 T TENSOR REMARK 3 T11: 0.1633 T22: 0.2172 REMARK 3 T33: 0.3069 T12: -0.0271 REMARK 3 T13: -0.0374 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.7393 L22: 1.6076 REMARK 3 L33: 2.1664 L12: 0.0717 REMARK 3 L13: 0.4024 L23: 0.8555 REMARK 3 S TENSOR REMARK 3 S11: 0.1158 S12: 0.2646 S13: -0.1163 REMARK 3 S21: -0.0092 S22: 0.0469 S23: -0.5367 REMARK 3 S31: -0.0465 S32: 0.3279 S33: -0.0574 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8350 2.1139 8.3009 REMARK 3 T TENSOR REMARK 3 T11: 0.1824 T22: 0.1452 REMARK 3 T33: 0.1956 T12: 0.0044 REMARK 3 T13: -0.0592 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 1.9003 L22: 1.5299 REMARK 3 L33: 2.0359 L12: 0.5964 REMARK 3 L13: -0.7448 L23: -1.0989 REMARK 3 S TENSOR REMARK 3 S11: -0.1785 S12: -0.1182 S13: -0.1292 REMARK 3 S21: 0.1728 S22: -0.0734 S23: -0.2321 REMARK 3 S31: 0.1073 S32: 0.1266 S33: 0.1957 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0857 -6.3065 -15.7196 REMARK 3 T TENSOR REMARK 3 T11: 0.2225 T22: 0.4497 REMARK 3 T33: 0.4110 T12: -0.0034 REMARK 3 T13: 0.0470 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 5.0633 L22: 4.0567 REMARK 3 L33: 5.9090 L12: 2.0969 REMARK 3 L13: -2.8317 L23: -2.5958 REMARK 3 S TENSOR REMARK 3 S11: -0.0437 S12: 0.0690 S13: 0.1319 REMARK 3 S21: -0.2091 S22: 0.1764 S23: -0.3752 REMARK 3 S31: 0.2147 S32: 0.9073 S33: -0.0889 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6581 -19.3415 -15.5751 REMARK 3 T TENSOR REMARK 3 T11: 0.3659 T22: 0.1664 REMARK 3 T33: 0.3694 T12: 0.0447 REMARK 3 T13: 0.0330 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.8026 L22: 1.4085 REMARK 3 L33: 2.6876 L12: 0.0241 REMARK 3 L13: 0.2575 L23: -0.1827 REMARK 3 S TENSOR REMARK 3 S11: 0.1637 S12: -0.0717 S13: -0.7020 REMARK 3 S21: 0.1898 S22: -0.0219 S23: 0.2066 REMARK 3 S31: 0.4744 S32: 0.0658 S33: -0.0870 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2203 -5.4169 -19.6228 REMARK 3 T TENSOR REMARK 3 T11: 0.1853 T22: 0.1500 REMARK 3 T33: 0.1715 T12: 0.0042 REMARK 3 T13: 0.0098 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.9260 L22: 0.9001 REMARK 3 L33: 1.4881 L12: -0.5973 REMARK 3 L13: -0.1891 L23: -0.0379 REMARK 3 S TENSOR REMARK 3 S11: 0.0271 S12: 0.1488 S13: -0.1973 REMARK 3 S21: 0.0003 S22: -0.0820 S23: 0.0445 REMARK 3 S31: 0.0900 S32: -0.0471 S33: 0.0375 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 149 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8914 10.6220 -18.9506 REMARK 3 T TENSOR REMARK 3 T11: 0.3588 T22: 0.2174 REMARK 3 T33: 0.2345 T12: -0.0600 REMARK 3 T13: 0.0251 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 5.0564 L22: 2.2428 REMARK 3 L33: 4.6647 L12: 0.5444 REMARK 3 L13: 2.6658 L23: 1.3185 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: 0.0830 S13: 0.6812 REMARK 3 S21: -0.3102 S22: 0.1885 S23: -0.0876 REMARK 3 S31: -0.4316 S32: 0.2268 S33: 0.0301 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 163 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3798 -7.0180 -29.5047 REMARK 3 T TENSOR REMARK 3 T11: 0.2614 T22: 0.3695 REMARK 3 T33: 0.3373 T12: -0.0175 REMARK 3 T13: -0.0205 T23: -0.1454 REMARK 3 L TENSOR REMARK 3 L11: 2.5885 L22: 0.8445 REMARK 3 L33: 3.1348 L12: 0.1700 REMARK 3 L13: 0.1010 L23: -0.8252 REMARK 3 S TENSOR REMARK 3 S11: -0.0391 S12: 0.6553 S13: -0.7278 REMARK 3 S21: -0.5294 S22: -0.1060 S23: 0.2394 REMARK 3 S31: 0.3195 S32: -0.4856 S33: 0.1119 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 194 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3619 9.7249 -10.1349 REMARK 3 T TENSOR REMARK 3 T11: 0.2552 T22: 0.3421 REMARK 3 T33: 0.2338 T12: 0.1027 REMARK 3 T13: -0.0258 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 1.4711 L22: 0.5440 REMARK 3 L33: 4.3837 L12: 0.0676 REMARK 3 L13: 0.6354 L23: 0.3506 REMARK 3 S TENSOR REMARK 3 S11: 0.1773 S12: 0.0741 S13: 0.1052 REMARK 3 S21: -0.1377 S22: -0.0585 S23: 0.0364 REMARK 3 S31: -0.6869 S32: -0.7436 S33: 0.0038 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 226 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4964 1.1454 -21.1801 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 0.1781 REMARK 3 T33: 0.1777 T12: 0.0062 REMARK 3 T13: 0.0030 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 5.3701 L22: 1.2280 REMARK 3 L33: 1.8519 L12: -1.4461 REMARK 3 L13: -0.2737 L23: 0.7230 REMARK 3 S TENSOR REMARK 3 S11: -0.1456 S12: -0.0704 S13: -0.0722 REMARK 3 S21: -0.1048 S22: 0.1230 S23: -0.1151 REMARK 3 S31: 0.0275 S32: 0.1005 S33: 0.0411 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 246 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5730 -11.3556 -19.6160 REMARK 3 T TENSOR REMARK 3 T11: 0.2376 T22: 0.2342 REMARK 3 T33: 0.2910 T12: -0.0188 REMARK 3 T13: 0.0040 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 3.2540 L22: 3.2598 REMARK 3 L33: 1.9780 L12: -0.5277 REMARK 3 L13: 0.1845 L23: 0.3289 REMARK 3 S TENSOR REMARK 3 S11: -0.0970 S12: -0.0877 S13: -0.7300 REMARK 3 S21: 0.2490 S22: 0.0843 S23: 0.4141 REMARK 3 S31: 0.4581 S32: -0.2015 S33: 0.0457 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5CYG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-15. REMARK 100 THE DEPOSITION ID IS D_1000212369. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : D*TREK, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32883 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.017 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 3.490 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CYF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG2000 MME, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.84850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.48250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.13850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.48250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.84850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.13850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 VAL A 4 REMARK 465 SER A 181 REMARK 465 LEU A 182 REMARK 465 LYS A 183 REMARK 465 CYS A 184 REMARK 465 VAL A 265 REMARK 465 THR A 266 REMARK 465 THR A 267 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 VAL B 4 REMARK 465 GLN B 5 REMARK 465 PRO B 6 REMARK 465 SER B 181 REMARK 465 LEU B 182 REMARK 465 LYS B 183 REMARK 465 CYS B 184 REMARK 465 THR B 266 REMARK 465 THR B 267 REMARK 465 SER B 268 REMARK 465 THR B 269 REMARK 465 VAL B 295 REMARK 465 ARG B 296 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 5 CG CD OE1 NE2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 75 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 ARG B 50 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 64 CG CD1 CD2 REMARK 470 LEU B 66 CG CD1 CD2 REMARK 470 HIS B 75 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 214 CG CD OE1 OE2 REMARK 470 GLU B 264 CG CD OE1 OE2 REMARK 470 LYS B 273 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 -114.96 50.06 REMARK 500 ARG A 140 126.65 -171.85 REMARK 500 TYR A 198 -79.96 -102.34 REMARK 500 GLU A 232 -159.32 -145.58 REMARK 500 ASP B 84 -117.82 51.49 REMARK 500 ASP B 166 92.15 -67.35 REMARK 500 TYR B 198 -81.23 -101.06 REMARK 500 GLU B 261 -34.67 -131.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 438 DISTANCE = 6.84 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CYF RELATED DB: PDB REMARK 900 URIDINE PHOSPHORYLASE ISOFORM 2 IN COMPLEX WITH CITRATE DBREF 5CYG A 1 296 UNP G4VGH9 G4VGH9_SCHMA 1 296 DBREF 5CYG B 1 296 UNP G4VGH9 G4VGH9_SCHMA 1 296 SEQADV 5CYG TYR A 243 UNP G4VGH9 ASN 243 CONFLICT SEQADV 5CYG TYR B 243 UNP G4VGH9 ASN 243 CONFLICT SEQRES 1 A 296 MET ALA THR VAL GLN PRO ILE VAL ASN SER HIS LEU SER SEQRES 2 A 296 GLU LEU ASP GLU ASP VAL PHE HIS HIS PHE GLY PHE THR SEQRES 3 A 296 THR LYS SER PHE ASP PHE LYS GLU LYS PHE GLY ASP VAL SEQRES 4 A 296 LYS PHE VAL CYS VAL CYS GLY SER SER GLY ARG ILE HIS SEQRES 5 A 296 ASN PHE ALA ILE SER MET ALA LYS LEU ALA GLY LEU ALA SEQRES 6 A 296 LEU PRO VAL GLU ASN ILE ALA GLY SER HIS ALA ARG PHE SEQRES 7 A 296 VAL LEU TYR LYS VAL ASP HIS ILE LEU PHE ALA ASP HIS SEQRES 8 A 296 GLY ILE GLY ILE PRO SER THR LEU ILE LEU MET HIS GLU SEQRES 9 A 296 VAL THR LYS LEU LEU TYR TYR ALA GLY CYS LYS ASP VAL SEQRES 10 A 296 LEU PHE ILE ARG LEU GLY THR SER ASP GLY LEU GLY VAL SEQRES 11 A 296 LYS PRO GLY THR ILE VAL LEU SER ASP ARG CYS VAL ASN SEQRES 12 A 296 THR LYS LEU GLU PRO TYR ASN GLU LEU CYS ILE LEU GLY SEQRES 13 A 296 LYS PRO VAL ARG ARG GLN THR LYS VAL ASP SER ASN ALA SEQRES 14 A 296 VAL ASN GLU LEU LYS LYS LEU SER GLU ASN LEU SER LEU SEQRES 15 A 296 LYS CYS SER VAL VAL VAL GLY GLY THR ILE THR ALA ASN SEQRES 16 A 296 ASP PHE TYR GLU GLU LEU GLY ARG LEU ASN GLY SER ILE SEQRES 17 A 296 CYS THR PHE SER LYS GLU GLU LYS LEU ALA PHE LEU GLN SEQRES 18 A 296 SER VAL TYR ASP HIS GLY ILE ARG ASN MET GLU MET GLU SEQRES 19 A 296 GLY ALA ALA ILE THR SER HIS CYS TYR LEU THR GLY HIS SEQRES 20 A 296 ARG ALA ILE LEU VAL CYS VAL THR VAL VAL ASN ARG LEU SEQRES 21 A 296 GLU THR ASP GLU VAL THR THR SER THR ASP GLU PHE LYS SEQRES 22 A 296 LEU PHE GLU GLN LEU PRO GLY GLN LEU VAL GLY GLU TYR SEQRES 23 A 296 LEU LYS ARG ASN ASN GLY ILE ILE VAL ARG SEQRES 1 B 296 MET ALA THR VAL GLN PRO ILE VAL ASN SER HIS LEU SER SEQRES 2 B 296 GLU LEU ASP GLU ASP VAL PHE HIS HIS PHE GLY PHE THR SEQRES 3 B 296 THR LYS SER PHE ASP PHE LYS GLU LYS PHE GLY ASP VAL SEQRES 4 B 296 LYS PHE VAL CYS VAL CYS GLY SER SER GLY ARG ILE HIS SEQRES 5 B 296 ASN PHE ALA ILE SER MET ALA LYS LEU ALA GLY LEU ALA SEQRES 6 B 296 LEU PRO VAL GLU ASN ILE ALA GLY SER HIS ALA ARG PHE SEQRES 7 B 296 VAL LEU TYR LYS VAL ASP HIS ILE LEU PHE ALA ASP HIS SEQRES 8 B 296 GLY ILE GLY ILE PRO SER THR LEU ILE LEU MET HIS GLU SEQRES 9 B 296 VAL THR LYS LEU LEU TYR TYR ALA GLY CYS LYS ASP VAL SEQRES 10 B 296 LEU PHE ILE ARG LEU GLY THR SER ASP GLY LEU GLY VAL SEQRES 11 B 296 LYS PRO GLY THR ILE VAL LEU SER ASP ARG CYS VAL ASN SEQRES 12 B 296 THR LYS LEU GLU PRO TYR ASN GLU LEU CYS ILE LEU GLY SEQRES 13 B 296 LYS PRO VAL ARG ARG GLN THR LYS VAL ASP SER ASN ALA SEQRES 14 B 296 VAL ASN GLU LEU LYS LYS LEU SER GLU ASN LEU SER LEU SEQRES 15 B 296 LYS CYS SER VAL VAL VAL GLY GLY THR ILE THR ALA ASN SEQRES 16 B 296 ASP PHE TYR GLU GLU LEU GLY ARG LEU ASN GLY SER ILE SEQRES 17 B 296 CYS THR PHE SER LYS GLU GLU LYS LEU ALA PHE LEU GLN SEQRES 18 B 296 SER VAL TYR ASP HIS GLY ILE ARG ASN MET GLU MET GLU SEQRES 19 B 296 GLY ALA ALA ILE THR SER HIS CYS TYR LEU THR GLY HIS SEQRES 20 B 296 ARG ALA ILE LEU VAL CYS VAL THR VAL VAL ASN ARG LEU SEQRES 21 B 296 GLU THR ASP GLU VAL THR THR SER THR ASP GLU PHE LYS SEQRES 22 B 296 LEU PHE GLU GLN LEU PRO GLY GLN LEU VAL GLY GLU TYR SEQRES 23 B 296 LEU LYS ARG ASN ASN GLY ILE ILE VAL ARG FORMUL 3 HOH *241(H2 O) HELIX 1 AA1 ASN A 9 LEU A 15 5 7 HELIX 2 AA2 ASP A 31 GLY A 37 1 7 HELIX 3 AA3 SER A 47 ALA A 62 1 16 HELIX 4 AA4 GLY A 94 ALA A 112 1 19 HELIX 5 AA5 ASP A 166 ASN A 179 1 14 HELIX 6 AA6 SER A 212 HIS A 226 1 15 HELIX 7 AA7 GLU A 234 GLY A 246 1 13 HELIX 8 AA8 THR A 269 ASN A 290 1 22 HELIX 9 AA9 ASN B 9 LEU B 15 5 7 HELIX 10 AB1 ASP B 31 GLY B 37 1 7 HELIX 11 AB2 SER B 47 GLY B 63 1 17 HELIX 12 AB3 GLY B 94 GLY B 113 1 20 HELIX 13 AB4 ASP B 166 LEU B 180 1 15 HELIX 14 AB5 TYR B 198 GLY B 202 5 5 HELIX 15 AB6 SER B 212 HIS B 226 1 15 HELIX 16 AB7 GLU B 234 GLY B 246 1 13 HELIX 17 AB8 GLU B 271 ARG B 289 1 19 SHEET 1 AA1 9 LEU A 80 VAL A 83 0 SHEET 2 AA1 9 ILE A 86 ASP A 90 -1 O PHE A 88 N TYR A 81 SHEET 3 AA1 9 PHE A 41 CYS A 45 1 N CYS A 43 O LEU A 87 SHEET 4 AA1 9 LEU A 118 GLY A 127 1 O ILE A 120 N VAL A 42 SHEET 5 AA1 9 ARG A 248 ASN A 258 1 O ARG A 248 N PHE A 119 SHEET 6 AA1 9 ILE A 135 VAL A 142 -1 N VAL A 136 O CYS A 253 SHEET 7 AA1 9 VAL A 186 THR A 193 1 O VAL A 187 N LEU A 137 SHEET 8 AA1 9 ILE A 228 GLU A 232 1 O GLU A 232 N ILE A 192 SHEET 9 AA1 9 LEU A 118 GLY A 127 -1 N ASP A 126 O MET A 231 SHEET 1 AA2 2 TYR A 149 ILE A 154 0 SHEET 2 AA2 2 LYS A 157 GLN A 162 -1 O VAL A 159 N LEU A 152 SHEET 1 AA3 9 LEU B 80 VAL B 83 0 SHEET 2 AA3 9 ILE B 86 ASP B 90 -1 O PHE B 88 N TYR B 81 SHEET 3 AA3 9 PHE B 41 CYS B 45 1 N CYS B 43 O LEU B 87 SHEET 4 AA3 9 LEU B 118 GLY B 127 1 O ILE B 120 N VAL B 42 SHEET 5 AA3 9 ARG B 248 ASN B 258 1 O VAL B 257 N GLY B 127 SHEET 6 AA3 9 ILE B 135 VAL B 142 -1 N VAL B 136 O CYS B 253 SHEET 7 AA3 9 VAL B 186 THR B 193 1 O VAL B 187 N ILE B 135 SHEET 8 AA3 9 ILE B 228 GLU B 232 1 O GLU B 232 N ILE B 192 SHEET 9 AA3 9 LEU B 118 GLY B 127 -1 N ASP B 126 O MET B 231 SHEET 1 AA4 2 TYR B 149 ILE B 154 0 SHEET 2 AA4 2 LYS B 157 GLN B 162 -1 O VAL B 159 N LEU B 152 CISPEP 1 LEU A 66 PRO A 67 0 5.08 CRYST1 57.697 76.277 118.965 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017332 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008406 0.00000