data_5CYT # _entry.id 5CYT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5CYT WWPDB D_1000179694 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 1989-07-12 _pdbx_database_PDB_obs_spr.pdb_id 5CYT _pdbx_database_PDB_obs_spr.replace_pdb_id 4CYT _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5CYT _pdbx_database_status.recvd_initial_deposition_date 1988-01-14 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Takano, T.' _audit_author.pdbx_ordinal 1 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Refinement of Myoglobin and Cytochrome C' 'Methods and Applications in Crystallographic Computing' ? 262 ? 1984 ? ? 0-19-855190-8 0836 'Oxford University Press, Oxford, England' -1 ? 1 'Conformation Change of Cytochrome C. I. Ferrocytochrome C Structure Refined at 1.5 Angstroms Resolution' J.Mol.Biol. 153 79 ? 1981 JMOBAK UK 0022-2836 0070 ? ? ? 2 ;Conformation Change of Cytochrome C. II. Ferricytochrome C Refinement at 1.8 Angstroms and Comparison with the Ferrocytochrome Structure ; J.Mol.Biol. 153 95 ? 1981 JMOBAK UK 0022-2836 0070 ? ? ? 3 'Redox Conformation Changes in Refined Tuna Cytochrome C' Proc.Natl.Acad.Sci.USA 77 6371 ? 1980 PNASA6 US 0027-8424 0040 ? ? ? 4 'Cytochrome C and the Evolution of Energy Metabolism' Sci.Am. 242 136 ? 1980 SCAMAC US 0036-8733 0420 ? ? ? 5 'Internal Mobility of Ferrocytochrome C' Nature 287 659 ? 1980 NATUAS UK 0028-0836 0006 ? ? ? 6 'Tuna Cytochrome C at 2.0 Angstroms Resolution. II. Ferrocytochrome Structure Analysis' J.Biol.Chem. 252 776 ? 1977 JBCHA3 US 0021-9258 0071 ? ? ? 7 'Tuna Cytochrome C at 2.0 Angstroms Resolution. I. Ferricytochrome Structure Analysis' J.Biol.Chem. 252 759 ? 1977 JBCHA3 US 0021-9258 0071 ? ? ? 8 'The Structure of Ferrocytochrome C at 2.45 Angstroms Resolution' J.Biol.Chem. 248 5234 ? 1973 JBCHA3 US 0021-9258 0071 ? ? ? 9 'The Structure and History of an Ancient Protein' Sci.Am. 226 58 ? 1972 SCAMAC US 0036-8733 0420 ? ? ? 10 ? 'Atlas of Protein Sequence and Structure,Supplement 2' 5 39 ? 1976 ? ? 0-912466-05-7 435 'National Biomedical Research Foundation, Silver Spring,Md.' ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Takano, T.' 1 ? 1 'Takano, T.' 2 ? 1 'Dickerson, R.E.' 3 ? 2 'Takano, T.' 4 ? 2 'Dickerson, R.E.' 5 ? 3 'Takano, T.' 6 ? 3 'Dickerson, R.E.' 7 ? 4 'Dickerson, R.E.' 8 ? 5 'Northrup, S.H.' 9 ? 5 'Pear, M.R.' 10 ? 5 'Mccammon, J.A.' 11 ? 5 'Karplus, M.' 12 ? 5 'Takano, T.' 13 ? 6 'Takano, T.' 14 ? 6 'Trus, B.L.' 15 ? 6 'Mandel, N.' 16 ? 6 'Mandel, G.' 17 ? 6 'Kallai, O.B.' 18 ? 6 'Swanson, R.' 19 ? 6 'Dickerson, R.E.' 20 ? 7 'Swanson, R.' 21 ? 7 'Trus, B.L.' 22 ? 7 'Mandel, N.' 23 ? 7 'Mandel, G.' 24 ? 7 'Kallai, O.B.' 25 ? 7 'Dickerson, R.E.' 26 ? 8 'Takano, T.' 27 ? 8 'Kallai, O.B.' 28 ? 8 'Swanson, R.' 29 ? 8 'Dickerson, R.E.' 30 ? 9 'Dickerson, R.E.' 31 ? # loop_ _citation_editor.citation_id _citation_editor.name _citation_editor.ordinal primary 'Hall, S.R.' 1 primary 'Ashida, T.' 2 10 'Dayhoff, M.O.' 3 # _cell.entry_id 5CYT _cell.length_a 37.330 _cell.length_b 87.100 _cell.length_c 34.440 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CYT _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CYTOCHROME C' 11416.114 1 ? ? ? ? 2 non-polymer syn 'HEME C' 618.503 1 ? ? ? ? 3 water nat water 18.015 91 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(ACE)GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYI PGTKMIFAGIKKKGERQDLVAYLKSATS ; _entity_poly.pdbx_seq_one_letter_code_can ;XGDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTK MIFAGIKKKGERQDLVAYLKSATS ; _entity_poly.pdbx_strand_id R _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 GLY n 1 3 ASP n 1 4 VAL n 1 5 ALA n 1 6 LYS n 1 7 GLY n 1 8 LYS n 1 9 LYS n 1 10 THR n 1 11 PHE n 1 12 VAL n 1 13 GLN n 1 14 LYS n 1 15 CYS n 1 16 ALA n 1 17 GLN n 1 18 CYS n 1 19 HIS n 1 20 THR n 1 21 VAL n 1 22 GLU n 1 23 ASN n 1 24 GLY n 1 25 GLY n 1 26 LYS n 1 27 HIS n 1 28 LYS n 1 29 VAL n 1 30 GLY n 1 31 PRO n 1 32 ASN n 1 33 LEU n 1 34 TRP n 1 35 GLY n 1 36 LEU n 1 37 PHE n 1 38 GLY n 1 39 ARG n 1 40 LYS n 1 41 THR n 1 42 GLY n 1 43 GLN n 1 44 ALA n 1 45 GLU n 1 46 GLY n 1 47 TYR n 1 48 SER n 1 49 TYR n 1 50 THR n 1 51 ASP n 1 52 ALA n 1 53 ASN n 1 54 LYS n 1 55 SER n 1 56 LYS n 1 57 GLY n 1 58 ILE n 1 59 VAL n 1 60 TRP n 1 61 ASN n 1 62 ASN n 1 63 ASP n 1 64 THR n 1 65 LEU n 1 66 MET n 1 67 GLU n 1 68 TYR n 1 69 LEU n 1 70 GLU n 1 71 ASN n 1 72 PRO n 1 73 LYS n 1 74 LYS n 1 75 TYR n 1 76 ILE n 1 77 PRO n 1 78 GLY n 1 79 THR n 1 80 LYS n 1 81 MET n 1 82 ILE n 1 83 PHE n 1 84 ALA n 1 85 GLY n 1 86 ILE n 1 87 LYS n 1 88 LYS n 1 89 LYS n 1 90 GLY n 1 91 GLU n 1 92 ARG n 1 93 GLN n 1 94 ASP n 1 95 LEU n 1 96 VAL n 1 97 ALA n 1 98 TYR n 1 99 LEU n 1 100 LYS n 1 101 SER n 1 102 ALA n 1 103 THR n 1 104 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name albacore _entity_src_gen.gene_src_genus Thunnus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thunnus alalunga' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 8235 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CYC_THUAA _struct_ref.pdbx_db_accession P81459 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5CYT _struct_ref_seq.pdbx_strand_id R _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 104 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P81459 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 103 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 103 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5CYT ASN R 62 ? UNP P81459 GLU 61 conflict 61 1 1 5CYT ASP R 63 ? UNP P81459 ASN 62 conflict 62 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEC non-polymer . 'HEME C' ? 'C34 H34 Fe N4 O4' 618.503 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 5CYT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_percent_sol 49.83 _exptl_crystal.description ? # _refine.entry_id 5CYT _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.5 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1590000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 803 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 91 _refine_hist.number_atoms_total 937 _refine_hist.d_res_high 1.5 _refine_hist.d_res_low . # _struct.entry_id 5CYT _struct.title 'REFINEMENT OF MYOGLOBIN AND CYTOCHROME C' _struct.pdbx_descriptor 'CYTOCHROME C (REDUCED)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5CYT _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT (HEME PROTEIN)' _struct_keywords.text 'ELECTRON TRANSPORT (HEME PROTEIN)' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 NR ASP A 3 ? CYS A 15 ? ASP R 2 CYS R 14 1 ? 13 HELX_P HELX_P2 50R THR A 50 ? LYS A 56 ? THR R 49 LYS R 55 1 ? 7 HELX_P HELX_P3 60R ASN A 61 ? GLU A 70 ? ASN R 60 GLU R 69 1 ? 10 HELX_P HELX_P4 70R GLU A 70 ? ILE A 76 ? GLU R 69 ILE R 75 1 'INCOMPLETE DUE TO PRO 76' 7 HELX_P HELX_P5 CR LYS A 88 ? THR A 103 ? LYS R 87 THR R 102 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A GLY 2 N ? ? R ACE 0 R GLY 1 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale2 covale none ? A CYS 15 SG ? ? ? 1_555 B HEC . CAB ? ? R CYS 14 R HEC 105 1_555 ? ? ? ? ? ? ? 1.820 ? ? covale3 covale none ? A CYS 18 SG ? ? ? 1_555 B HEC . CAC ? ? R CYS 17 R HEC 105 1_555 ? ? ? ? ? ? ? 1.836 ? ? metalc1 metalc ? ? A HIS 19 NE2 ? ? ? 1_555 B HEC . FE ? ? R HIS 18 R HEC 105 1_555 ? ? ? ? ? ? ? 1.978 ? ? metalc2 metalc ? ? A MET 81 SD ? ? ? 1_555 B HEC . FE ? ? R MET 80 R HEC 105 1_555 ? ? ? ? ? ? ? 2.308 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id R _struct_site.pdbx_auth_comp_id HEC _struct_site.pdbx_auth_seq_id 105 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 22 _struct_site.details 'BINDING SITE FOR RESIDUE HEC R 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 22 VAL A 12 ? VAL R 11 . ? 4_546 ? 2 AC1 22 LYS A 14 ? LYS R 13 . ? 1_555 ? 3 AC1 22 CYS A 15 ? CYS R 14 . ? 1_555 ? 4 AC1 22 GLN A 17 ? GLN R 16 . ? 1_555 ? 5 AC1 22 CYS A 18 ? CYS R 17 . ? 1_555 ? 6 AC1 22 HIS A 19 ? HIS R 18 . ? 1_555 ? 7 AC1 22 GLY A 30 ? GLY R 29 . ? 1_555 ? 8 AC1 22 PRO A 31 ? PRO R 30 . ? 1_555 ? 9 AC1 22 ARG A 39 ? ARG R 38 . ? 1_555 ? 10 AC1 22 GLY A 42 ? GLY R 41 . ? 1_555 ? 11 AC1 22 TYR A 47 ? TYR R 46 . ? 1_555 ? 12 AC1 22 TYR A 49 ? TYR R 48 . ? 1_555 ? 13 AC1 22 THR A 50 ? THR R 49 . ? 1_555 ? 14 AC1 22 ASN A 53 ? ASN R 52 . ? 1_555 ? 15 AC1 22 TRP A 60 ? TRP R 59 . ? 1_555 ? 16 AC1 22 TYR A 68 ? TYR R 67 . ? 1_555 ? 17 AC1 22 THR A 79 ? THR R 78 . ? 1_555 ? 18 AC1 22 LYS A 80 ? LYS R 79 . ? 1_555 ? 19 AC1 22 MET A 81 ? MET R 80 . ? 1_555 ? 20 AC1 22 PHE A 83 ? PHE R 82 . ? 1_555 ? 21 AC1 22 LEU A 95 ? LEU R 94 . ? 1_555 ? 22 AC1 22 HOH C . ? HOH R 129 . ? 1_555 ? # _database_PDB_matrix.entry_id 5CYT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5CYT _atom_sites.fract_transf_matrix[1][1] 0.026788 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011481 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029036 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE R . n A 1 2 GLY 2 1 1 GLY GLY R . n A 1 3 ASP 3 2 2 ASP ASP R . n A 1 4 VAL 4 3 3 VAL VAL R . n A 1 5 ALA 5 4 4 ALA ALA R . n A 1 6 LYS 6 5 5 LYS LYS R . n A 1 7 GLY 7 6 6 GLY GLY R . n A 1 8 LYS 8 7 7 LYS LYS R . n A 1 9 LYS 9 8 8 LYS LYS R . n A 1 10 THR 10 9 9 THR THR R . n A 1 11 PHE 11 10 10 PHE PHE R . n A 1 12 VAL 12 11 11 VAL VAL R . n A 1 13 GLN 13 12 12 GLN GLN R . n A 1 14 LYS 14 13 13 LYS LYS R . n A 1 15 CYS 15 14 14 CYS CYS R . n A 1 16 ALA 16 15 15 ALA ALA R . n A 1 17 GLN 17 16 16 GLN GLN R . n A 1 18 CYS 18 17 17 CYS CYS R . n A 1 19 HIS 19 18 18 HIS HIS R . n A 1 20 THR 20 19 19 THR THR R . n A 1 21 VAL 21 20 20 VAL VAL R . n A 1 22 GLU 22 21 21 GLU GLU R . n A 1 23 ASN 23 22 22 ASN ASN R . n A 1 24 GLY 24 23 23 GLY GLY R . n A 1 25 GLY 25 24 24 GLY GLY R . n A 1 26 LYS 26 25 25 LYS LYS R . n A 1 27 HIS 27 26 26 HIS HIS R . n A 1 28 LYS 28 27 27 LYS LYS R . n A 1 29 VAL 29 28 28 VAL VAL R . n A 1 30 GLY 30 29 29 GLY GLY R . n A 1 31 PRO 31 30 30 PRO PRO R . n A 1 32 ASN 32 31 31 ASN ASN R . n A 1 33 LEU 33 32 32 LEU LEU R . n A 1 34 TRP 34 33 33 TRP TRP R . n A 1 35 GLY 35 34 34 GLY GLY R . n A 1 36 LEU 36 35 35 LEU LEU R . n A 1 37 PHE 37 36 36 PHE PHE R . n A 1 38 GLY 38 37 37 GLY GLY R . n A 1 39 ARG 39 38 38 ARG ARG R . n A 1 40 LYS 40 39 39 LYS LYS R . n A 1 41 THR 41 40 40 THR THR R . n A 1 42 GLY 42 41 41 GLY GLY R . n A 1 43 GLN 43 42 42 GLN GLN R . n A 1 44 ALA 44 43 43 ALA ALA R . n A 1 45 GLU 45 44 44 GLU GLU R . n A 1 46 GLY 46 45 45 GLY GLY R . n A 1 47 TYR 47 46 46 TYR TYR R . n A 1 48 SER 48 47 47 SER SER R . n A 1 49 TYR 49 48 48 TYR TYR R . n A 1 50 THR 50 49 49 THR THR R . n A 1 51 ASP 51 50 50 ASP ASP R . n A 1 52 ALA 52 51 51 ALA ALA R . n A 1 53 ASN 53 52 52 ASN ASN R . n A 1 54 LYS 54 53 53 LYS LYS R . n A 1 55 SER 55 54 54 SER SER R . n A 1 56 LYS 56 55 55 LYS LYS R . n A 1 57 GLY 57 56 56 GLY GLY R . n A 1 58 ILE 58 57 57 ILE ILE R . n A 1 59 VAL 59 58 58 VAL VAL R . n A 1 60 TRP 60 59 59 TRP TRP R . n A 1 61 ASN 61 60 60 ASN ASN R . n A 1 62 ASN 62 61 61 ASN ASN R . n A 1 63 ASP 63 62 62 ASP ASP R . n A 1 64 THR 64 63 63 THR THR R . n A 1 65 LEU 65 64 64 LEU LEU R . n A 1 66 MET 66 65 65 MET MET R . n A 1 67 GLU 67 66 66 GLU GLU R . n A 1 68 TYR 68 67 67 TYR TYR R . n A 1 69 LEU 69 68 68 LEU LEU R . n A 1 70 GLU 70 69 69 GLU GLU R . n A 1 71 ASN 71 70 70 ASN ASN R . n A 1 72 PRO 72 71 71 PRO PRO R . n A 1 73 LYS 73 72 72 LYS LYS R . n A 1 74 LYS 74 73 73 LYS LYS R . n A 1 75 TYR 75 74 74 TYR TYR R . n A 1 76 ILE 76 75 75 ILE ILE R . n A 1 77 PRO 77 76 76 PRO PRO R . n A 1 78 GLY 78 77 77 GLY GLY R . n A 1 79 THR 79 78 78 THR THR R . n A 1 80 LYS 80 79 79 LYS LYS R . n A 1 81 MET 81 80 80 MET MET R . n A 1 82 ILE 82 81 81 ILE ILE R . n A 1 83 PHE 83 82 82 PHE PHE R . n A 1 84 ALA 84 83 83 ALA ALA R . n A 1 85 GLY 85 84 84 GLY GLY R . n A 1 86 ILE 86 85 85 ILE ILE R . n A 1 87 LYS 87 86 86 LYS LYS R . n A 1 88 LYS 88 87 87 LYS LYS R . n A 1 89 LYS 89 88 88 LYS LYS R . n A 1 90 GLY 90 89 89 GLY GLY R . n A 1 91 GLU 91 90 90 GLU GLU R . n A 1 92 ARG 92 91 91 ARG ARG R . n A 1 93 GLN 93 92 92 GLN GLN R . n A 1 94 ASP 94 93 93 ASP ASP R . n A 1 95 LEU 95 94 94 LEU LEU R . n A 1 96 VAL 96 95 95 VAL VAL R . n A 1 97 ALA 97 96 96 ALA ALA R . n A 1 98 TYR 98 97 97 TYR TYR R . n A 1 99 LEU 99 98 98 LEU LEU R . n A 1 100 LYS 100 99 99 LYS LYS R . n A 1 101 SER 101 100 100 SER SER R . n A 1 102 ALA 102 101 101 ALA ALA R . n A 1 103 THR 103 102 102 THR THR R . n A 1 104 SER 104 103 103 SER SER R . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC 1 105 105 HEC HEM R . C 3 HOH 1 106 1 HOH HOH R . C 3 HOH 2 107 2 HOH HOH R . C 3 HOH 3 108 3 HOH HOH R . C 3 HOH 4 109 4 HOH HOH R . C 3 HOH 5 110 5 HOH HOH R . C 3 HOH 6 111 6 HOH HOH R . C 3 HOH 7 112 7 HOH HOH R . C 3 HOH 8 113 8 HOH HOH R . C 3 HOH 9 114 10 HOH HOH R . C 3 HOH 10 115 11 HOH HOH R . C 3 HOH 11 116 12 HOH HOH R . C 3 HOH 12 117 13 HOH HOH R . C 3 HOH 13 118 14 HOH HOH R . C 3 HOH 14 119 15 HOH HOH R . C 3 HOH 15 120 16 HOH HOH R . C 3 HOH 16 121 18 HOH HOH R . C 3 HOH 17 122 19 HOH HOH R . C 3 HOH 18 123 20 HOH HOH R . C 3 HOH 19 124 21 HOH HOH R . C 3 HOH 20 125 22 HOH HOH R . C 3 HOH 21 126 23 HOH HOH R . C 3 HOH 22 127 24 HOH HOH R . C 3 HOH 23 128 25 HOH HOH R . C 3 HOH 24 129 26 HOH HOH R . C 3 HOH 25 130 27 HOH HOH R . C 3 HOH 26 131 28 HOH HOH R . C 3 HOH 27 132 29 HOH HOH R . C 3 HOH 28 133 30 HOH HOH R . C 3 HOH 29 134 31 HOH HOH R . C 3 HOH 30 135 32 HOH HOH R . C 3 HOH 31 136 33 HOH HOH R . C 3 HOH 32 137 34 HOH HOH R . C 3 HOH 33 138 35 HOH HOH R . C 3 HOH 34 139 36 HOH HOH R . C 3 HOH 35 140 37 HOH HOH R . C 3 HOH 36 141 38 HOH HOH R . C 3 HOH 37 142 39 HOH HOH R . C 3 HOH 38 143 40 HOH HOH R . C 3 HOH 39 144 42 HOH HOH R . C 3 HOH 40 145 43 HOH HOH R . C 3 HOH 41 146 44 HOH HOH R . C 3 HOH 42 147 46 HOH HOH R . C 3 HOH 43 148 47 HOH HOH R . C 3 HOH 44 149 48 HOH HOH R . C 3 HOH 45 150 49 HOH HOH R . C 3 HOH 46 151 50 HOH HOH R . C 3 HOH 47 152 51 HOH HOH R . C 3 HOH 48 153 52 HOH HOH R . C 3 HOH 49 154 53 HOH HOH R . C 3 HOH 50 155 54 HOH HOH R . C 3 HOH 51 156 55 HOH HOH R . C 3 HOH 52 157 56 HOH HOH R . C 3 HOH 53 158 57 HOH HOH R . C 3 HOH 54 159 58 HOH HOH R . C 3 HOH 55 160 60 HOH HOH R . C 3 HOH 56 161 61 HOH HOH R . C 3 HOH 57 162 62 HOH HOH R . C 3 HOH 58 163 63 HOH HOH R . C 3 HOH 59 164 64 HOH HOH R . C 3 HOH 60 165 65 HOH HOH R . C 3 HOH 61 166 66 HOH HOH R . C 3 HOH 62 167 67 HOH HOH R . C 3 HOH 63 168 68 HOH HOH R . C 3 HOH 64 169 69 HOH HOH R . C 3 HOH 65 170 70 HOH HOH R . C 3 HOH 66 171 71 HOH HOH R . C 3 HOH 67 172 72 HOH HOH R . C 3 HOH 68 173 73 HOH HOH R . C 3 HOH 69 174 74 HOH HOH R . C 3 HOH 70 175 75 HOH HOH R . C 3 HOH 71 176 76 HOH HOH R . C 3 HOH 72 177 77 HOH HOH R . C 3 HOH 73 178 78 HOH HOH R . C 3 HOH 74 179 79 HOH HOH R . C 3 HOH 75 180 80 HOH HOH R . C 3 HOH 76 181 81 HOH HOH R . C 3 HOH 77 182 82 HOH HOH R . C 3 HOH 78 183 83 HOH HOH R . C 3 HOH 79 184 84 HOH HOH R . C 3 HOH 80 185 85 HOH HOH R . C 3 HOH 81 186 86 HOH HOH R . C 3 HOH 82 187 87 HOH HOH R . C 3 HOH 83 188 88 HOH HOH R . C 3 HOH 84 189 89 HOH HOH R . C 3 HOH 85 190 90 HOH HOH R . C 3 HOH 86 191 91 HOH HOH R . C 3 HOH 87 192 92 HOH HOH R . C 3 HOH 88 193 93 HOH HOH R . C 3 HOH 89 194 94 HOH HOH R . C 3 HOH 90 195 95 HOH HOH R . C 3 HOH 91 196 96 HOH HOH R . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 19 ? R HIS 18 ? 1_555 FE ? B HEC . ? R HEC 105 ? 1_555 NA ? B HEC . ? R HEC 105 ? 1_555 88.2 ? 2 NE2 ? A HIS 19 ? R HIS 18 ? 1_555 FE ? B HEC . ? R HEC 105 ? 1_555 NB ? B HEC . ? R HEC 105 ? 1_555 87.2 ? 3 NA ? B HEC . ? R HEC 105 ? 1_555 FE ? B HEC . ? R HEC 105 ? 1_555 NB ? B HEC . ? R HEC 105 ? 1_555 90.5 ? 4 NE2 ? A HIS 19 ? R HIS 18 ? 1_555 FE ? B HEC . ? R HEC 105 ? 1_555 NC ? B HEC . ? R HEC 105 ? 1_555 92.9 ? 5 NA ? B HEC . ? R HEC 105 ? 1_555 FE ? B HEC . ? R HEC 105 ? 1_555 NC ? B HEC . ? R HEC 105 ? 1_555 178.9 ? 6 NB ? B HEC . ? R HEC 105 ? 1_555 FE ? B HEC . ? R HEC 105 ? 1_555 NC ? B HEC . ? R HEC 105 ? 1_555 89.3 ? 7 NE2 ? A HIS 19 ? R HIS 18 ? 1_555 FE ? B HEC . ? R HEC 105 ? 1_555 ND ? B HEC . ? R HEC 105 ? 1_555 88.2 ? 8 NA ? B HEC . ? R HEC 105 ? 1_555 FE ? B HEC . ? R HEC 105 ? 1_555 ND ? B HEC . ? R HEC 105 ? 1_555 90.8 ? 9 NB ? B HEC . ? R HEC 105 ? 1_555 FE ? B HEC . ? R HEC 105 ? 1_555 ND ? B HEC . ? R HEC 105 ? 1_555 175.2 ? 10 NC ? B HEC . ? R HEC 105 ? 1_555 FE ? B HEC . ? R HEC 105 ? 1_555 ND ? B HEC . ? R HEC 105 ? 1_555 89.5 ? 11 NE2 ? A HIS 19 ? R HIS 18 ? 1_555 FE ? B HEC . ? R HEC 105 ? 1_555 SD ? A MET 81 ? R MET 80 ? 1_555 174.7 ? 12 NA ? B HEC . ? R HEC 105 ? 1_555 FE ? B HEC . ? R HEC 105 ? 1_555 SD ? A MET 81 ? R MET 80 ? 1_555 87.1 ? 13 NB ? B HEC . ? R HEC 105 ? 1_555 FE ? B HEC . ? R HEC 105 ? 1_555 SD ? A MET 81 ? R MET 80 ? 1_555 95.3 ? 14 NC ? B HEC . ? R HEC 105 ? 1_555 FE ? B HEC . ? R HEC 105 ? 1_555 SD ? A MET 81 ? R MET 80 ? 1_555 91.8 ? 15 ND ? B HEC . ? R HEC 105 ? 1_555 FE ? B HEC . ? R HEC 105 ? 1_555 SD ? A MET 81 ? R MET 80 ? 1_555 89.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1989-07-12 2 'Structure model' 1 1 2008-03-25 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-11-29 5 'Structure model' 2 0 2021-03-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Derived calculations' 4 4 'Structure model' Other 5 5 'Structure model' Advisory 6 5 'Structure model' 'Atomic model' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' 'Non-polymer description' 11 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_database_status 2 4 'Structure model' struct_conf 3 4 'Structure model' struct_conf_type 4 5 'Structure model' atom_site 5 5 'Structure model' chem_comp 6 5 'Structure model' entity 7 5 'Structure model' pdbx_distant_solvent_atoms 8 5 'Structure model' pdbx_entity_nonpoly 9 5 'Structure model' pdbx_nonpoly_scheme 10 5 'Structure model' pdbx_struct_conn_angle 11 5 'Structure model' struct_conn 12 5 'Structure model' struct_ref_seq_dif 13 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_database_status.process_site' 2 5 'Structure model' '_atom_site.B_iso_or_equiv' 3 5 'Structure model' '_atom_site.Cartn_x' 4 5 'Structure model' '_atom_site.Cartn_y' 5 5 'Structure model' '_atom_site.Cartn_z' 6 5 'Structure model' '_atom_site.auth_atom_id' 7 5 'Structure model' '_atom_site.auth_comp_id' 8 5 'Structure model' '_atom_site.label_atom_id' 9 5 'Structure model' '_atom_site.label_comp_id' 10 5 'Structure model' '_atom_site.type_symbol' 11 5 'Structure model' '_chem_comp.formula' 12 5 'Structure model' '_chem_comp.formula_weight' 13 5 'Structure model' '_chem_comp.id' 14 5 'Structure model' '_chem_comp.name' 15 5 'Structure model' '_chem_comp.pdbx_synonyms' 16 5 'Structure model' '_entity.formula_weight' 17 5 'Structure model' '_entity.pdbx_description' 18 5 'Structure model' '_pdbx_entity_nonpoly.comp_id' 19 5 'Structure model' '_pdbx_entity_nonpoly.name' 20 5 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 21 5 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 27 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 28 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 29 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 32 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 34 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 35 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 41 5 'Structure model' '_struct_ref_seq_dif.details' 42 5 'Structure model' '_struct_site.details' 43 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 44 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 45 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _software.name EREF _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CB R SER 54 ? ? O R HOH 177 ? ? 1.35 2 1 O R HOH 122 ? ? O R HOH 184 ? ? 1.96 3 1 OE1 R GLU 21 ? ? O R HOH 189 ? ? 1.98 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NZ _pdbx_validate_symm_contact.auth_asym_id_1 R _pdbx_validate_symm_contact.auth_comp_id_1 LYS _pdbx_validate_symm_contact.auth_seq_id_1 88 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NZ _pdbx_validate_symm_contact.auth_asym_id_2 R _pdbx_validate_symm_contact.auth_comp_id_2 LYS _pdbx_validate_symm_contact.auth_seq_id_2 88 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 1.15 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 NE1 R TRP 33 ? ? CE2 R TRP 33 ? ? 1.280 1.371 -0.091 0.013 N 2 1 NE1 R TRP 59 ? ? CE2 R TRP 59 ? ? 1.286 1.371 -0.085 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE R ARG 38 ? ? CZ R ARG 38 ? ? NH2 R ARG 38 ? ? 123.42 120.30 3.12 0.50 N 2 1 NE R ARG 91 ? ? CZ R ARG 91 ? ? NH1 R ARG 91 ? ? 124.39 120.30 4.09 0.50 N 3 1 NE R ARG 91 ? ? CZ R ARG 91 ? ? NH2 R ARG 91 ? ? 116.01 120.30 -4.29 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL R 28 ? ? -133.99 -49.09 2 1 ASN R 70 ? ? -161.29 83.39 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id LYS _pdbx_validate_main_chain_plane.auth_asym_id R _pdbx_validate_main_chain_plane.auth_seq_id 25 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -10.10 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id R _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 187 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 10.63 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'HEME C' HEC 3 water HOH #