HEADER HYDROLASE 05-AUG-15 5D2B TITLE CRYSTAL STRUCTURE OF A MUTATED CATALYTIC DOMAIN OF HUMAN MMP12 IN TITLE 2 COMPLEX WITH AN HYDROXAMATE ANALOGUE OF RXP470 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE METALLOELASTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN UNP RESIDUES 106-263; COMPND 5 SYNONYM: MME,MACROPHAGE ELASTASE,HME,MATRIX METALLOPROTEINASE-12,MMP- COMPND 6 12; COMPND 7 EC: 3.4.24.65; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP12, HME; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET24A KEYWDS METZINCIN, MATRIX METALLO ELASTASE, MMP12, HUMAN, RXP470, MACROPHAGE, KEYWDS 2 HYDROLASE, HYDROXAMATE BASED INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR C.ROUANET-MEHOUAS,L.DEVEL,V.DIVE,E.A.STURA REVDAT 6 10-JAN-24 5D2B 1 LINK REVDAT 5 20-DEC-17 5D2B 1 AUTHOR REVDAT 4 25-JAN-17 5D2B 1 JRNL REVDAT 3 11-JAN-17 5D2B 1 JRNL REVDAT 2 21-DEC-16 5D2B 1 JRNL REVDAT 1 17-AUG-16 5D2B 0 JRNL AUTH C.ROUANET-MEHOUAS,B.CZARNY,F.BEAU,E.CASSAR-LAJEUNESSE, JRNL AUTH 2 E.A.STURA,V.DIVE,L.DEVEL JRNL TITL ZINC-METALLOPROTEINASE INHIBITORS: EVALUATION OF THE COMPLEX JRNL TITL 2 ROLE PLAYED BY THE ZINC-BINDING GROUP ON POTENCY AND JRNL TITL 3 SELECTIVITY. JRNL REF J. MED. CHEM. V. 60 403 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 27996256 JRNL DOI 10.1021/ACS.JMEDCHEM.6B01420 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 96507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.4651 - 3.7268 0.96 2923 154 0.1467 0.1463 REMARK 3 2 3.7268 - 2.9587 1.00 3089 161 0.1374 0.1793 REMARK 3 3 2.9587 - 2.5849 1.00 3054 163 0.1559 0.1658 REMARK 3 4 2.5849 - 2.3486 1.00 3092 160 0.1508 0.1775 REMARK 3 5 2.3486 - 2.1803 1.00 3049 162 0.1492 0.1829 REMARK 3 6 2.1803 - 2.0518 1.00 3053 163 0.1368 0.1755 REMARK 3 7 2.0518 - 1.9491 1.00 3083 160 0.1391 0.1565 REMARK 3 8 1.9491 - 1.8642 1.00 3063 160 0.1311 0.1457 REMARK 3 9 1.8642 - 1.7925 1.00 3085 168 0.1366 0.1380 REMARK 3 10 1.7925 - 1.7306 1.00 3055 157 0.1415 0.1575 REMARK 3 11 1.7306 - 1.6765 1.00 3050 161 0.1415 0.1684 REMARK 3 12 1.6765 - 1.6286 1.00 3098 164 0.1352 0.1425 REMARK 3 13 1.6286 - 1.5857 1.00 3045 158 0.1388 0.1854 REMARK 3 14 1.5857 - 1.5470 1.00 3087 167 0.1412 0.1330 REMARK 3 15 1.5470 - 1.5119 1.00 3072 163 0.1423 0.2069 REMARK 3 16 1.5119 - 1.4797 1.00 3052 160 0.1432 0.1683 REMARK 3 17 1.4797 - 1.4501 1.00 3097 161 0.1506 0.1610 REMARK 3 18 1.4501 - 1.4227 1.00 3094 157 0.1557 0.1789 REMARK 3 19 1.4227 - 1.3973 1.00 3042 154 0.1579 0.1765 REMARK 3 20 1.3973 - 1.3736 1.00 3077 163 0.1696 0.1857 REMARK 3 21 1.3736 - 1.3515 1.00 3053 157 0.1806 0.2009 REMARK 3 22 1.3515 - 1.3307 1.00 3095 166 0.1811 0.1887 REMARK 3 23 1.3307 - 1.3111 1.00 3023 163 0.1924 0.2225 REMARK 3 24 1.3111 - 1.2926 1.00 3091 161 0.2059 0.2763 REMARK 3 25 1.2926 - 1.2752 1.00 3047 162 0.2034 0.1829 REMARK 3 26 1.2752 - 1.2586 1.00 3065 160 0.2306 0.2265 REMARK 3 27 1.2586 - 1.2429 0.99 3094 162 0.2644 0.2995 REMARK 3 28 1.2429 - 1.2279 0.99 2968 154 0.2746 0.3295 REMARK 3 29 1.2279 - 1.2136 0.98 3029 163 0.2971 0.3487 REMARK 3 30 1.2136 - 1.2000 0.95 2967 151 0.3127 0.2810 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1533 REMARK 3 ANGLE : 1.067 2099 REMARK 3 CHIRALITY : 0.070 206 REMARK 3 PLANARITY : 0.006 283 REMARK 3 DIHEDRAL : 14.719 560 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212506. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0-9.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED CHANNEL-CUT REMARK 200 SI[111] REMARK 200 OPTICS : CONVEX HORIZONTAL PRE-FOCUSSING REMARK 200 MIRROR (HPM) AND A PAIR OF REMARK 200 FOCUSING BIMORPH MIRRORS IN REMARK 200 KIRKPATRICK-BAEZ (KB) REMARK 200 CONFIGURATION REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96542 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 32.453 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 8.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 1.05000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4GQL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN : HMMP12 F171D AT 820 MICRO-M REMARK 280 + 10 MILLI-M AHA + 0.708 MILLI-M INHIBITOR. PRECIPITANT : 20% REMARK 280 PEG4000, 0.2 M TRIS PH 9.5 CRYOPROTECTANT : 10 % DIETHYLENE REMARK 280 GLYCOL + 5 % GLYCEROL + 10 % 1,2-PROPANEDIOL + 5 % 1,4-DIOXANE + REMARK 280 25% PEG6000 + 0.1 M TRIS HCL PH 8.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.45000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.45000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 421 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 429 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 476 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 110 47.41 -95.44 REMARK 500 HIS A 206 -155.92 -139.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 ASP A 124 OD2 51.8 REMARK 620 3 GLU A 199 O 160.6 138.7 REMARK 620 4 GLU A 199 OE2 86.5 86.1 79.1 REMARK 620 5 GLU A 201 O 122.9 77.5 75.7 117.4 REMARK 620 6 HOH A 552 O 84.8 97.1 106.5 166.0 76.6 REMARK 620 7 HOH A 588 O 84.2 135.7 82.0 86.8 142.6 81.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 158 O REMARK 620 2 GLY A 190 O 167.8 REMARK 620 3 GLY A 192 O 92.8 93.1 REMARK 620 4 ASP A 194 OD2 90.8 100.2 87.4 REMARK 620 5 HOH A 441 O 85.9 87.5 175.4 97.0 REMARK 620 6 HOH A 456 O 83.7 86.7 80.4 166.3 95.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 168 NE2 REMARK 620 2 ASP A 170 OD1 108.1 REMARK 620 3 HIS A 183 NE2 121.7 109.4 REMARK 620 4 HIS A 196 ND1 107.3 97.5 110.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 175 OD2 REMARK 620 2 GLY A 176 O 86.7 REMARK 620 3 GLY A 178 O 86.6 88.6 REMARK 620 4 ILE A 180 O 91.1 177.5 90.1 REMARK 620 5 ASP A 198 OD1 96.6 87.9 175.1 93.5 REMARK 620 6 GLU A 201 OE2 176.5 94.7 90.3 87.5 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 218 NE2 REMARK 620 2 HIS A 222 NE2 102.1 REMARK 620 3 HIS A 228 NE2 108.1 97.3 REMARK 620 4 56O A 306 O24 106.8 86.1 143.4 REMARK 620 5 56O A 306 O24 102.6 86.0 147.7 4.3 REMARK 620 6 56O A 306 O23 111.3 143.5 86.4 70.7 72.9 REMARK 620 7 56O A 306 O23 94.4 160.6 87.1 79.4 80.5 17.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 56O A 306 DBREF 5D2B A 106 263 UNP P39900 MMP12_HUMAN 106 263 SEQADV 5D2B MET A 105 UNP P39900 INITIATING METHIONINE SEQADV 5D2B ASP A 171 UNP P39900 PHE 171 ENGINEERED MUTATION SEQRES 1 A 159 MET GLY PRO VAL TRP ARG LYS HIS TYR ILE THR TYR ARG SEQRES 2 A 159 ILE ASN ASN TYR THR PRO ASP MET ASN ARG GLU ASP VAL SEQRES 3 A 159 ASP TYR ALA ILE ARG LYS ALA PHE GLN VAL TRP SER ASN SEQRES 4 A 159 VAL THR PRO LEU LYS PHE SER LYS ILE ASN THR GLY MET SEQRES 5 A 159 ALA ASP ILE LEU VAL VAL PHE ALA ARG GLY ALA HIS GLY SEQRES 6 A 159 ASP ASP HIS ALA PHE ASP GLY LYS GLY GLY ILE LEU ALA SEQRES 7 A 159 HIS ALA PHE GLY PRO GLY SER GLY ILE GLY GLY ASP ALA SEQRES 8 A 159 HIS PHE ASP GLU ASP GLU PHE TRP THR THR HIS SER GLY SEQRES 9 A 159 GLY THR ASN LEU PHE LEU THR ALA VAL HIS GLU ILE GLY SEQRES 10 A 159 HIS SER LEU GLY LEU GLY HIS SER SER ASP PRO LYS ALA SEQRES 11 A 159 VAL MET PHE PRO THR TYR LYS TYR VAL ASP ILE ASN THR SEQRES 12 A 159 PHE ARG LEU SER ALA ASP ASP ILE ARG GLY ILE GLN SER SEQRES 13 A 159 LEU TYR GLY HET ZN A 301 1 HET ZN A 302 1 HET CA A 303 1 HET CA A 304 1 HET CA A 305 1 HET 56O A 306 92 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM 56O N-[(2R)-2-{[3-(3'-CHLOROBIPHENYL-4-YL)-1,2-OXAZOL-5- HETNAM 2 56O YL]METHYL}-4-(HYDROXYAMINO)-4-OXOBUTANOYL]-L-ALPHA- HETNAM 3 56O GLUTAMYL-L-ALPHA-GLUTAMINE FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA 3(CA 2+) FORMUL 7 56O C30 H32 CL N5 O10 FORMUL 8 HOH *293(H2 O) HELIX 1 AA1 ASN A 126 ASN A 143 1 18 HELIX 2 AA2 LEU A 212 LEU A 224 1 13 HELIX 3 AA3 SER A 251 TYR A 262 1 12 SHEET 1 AA1 5 LYS A 148 LYS A 151 0 SHEET 2 AA1 5 TYR A 113 ILE A 118 1 N ILE A 114 O LYS A 148 SHEET 3 AA1 5 ILE A 159 ALA A 164 1 O VAL A 161 N ARG A 117 SHEET 4 AA1 5 ALA A 195 ASP A 198 1 O PHE A 197 N VAL A 162 SHEET 5 AA1 5 ALA A 182 ALA A 184 -1 N HIS A 183 O HIS A 196 SHEET 1 AA2 2 TRP A 203 THR A 204 0 SHEET 2 AA2 2 THR A 210 ASN A 211 1 O THR A 210 N THR A 204 LINK OD1 ASP A 124 CA CA A 304 1555 1555 2.61 LINK OD2 ASP A 124 CA CA A 304 1555 1555 2.37 LINK O ASP A 158 CA CA A 303 1555 1555 2.32 LINK NE2 HIS A 168 ZN ZN A 302 1555 1555 2.02 LINK OD1 ASP A 170 ZN ZN A 302 1555 1555 1.99 LINK OD2 ASP A 175 CA CA A 305 1555 1555 2.32 LINK O GLY A 176 CA CA A 305 1555 1555 2.31 LINK O GLY A 178 CA CA A 305 1555 1555 2.31 LINK O ILE A 180 CA CA A 305 1555 1555 2.30 LINK NE2 HIS A 183 ZN ZN A 302 1555 1555 1.99 LINK O GLY A 190 CA CA A 303 1555 1555 2.27 LINK O GLY A 192 CA CA A 303 1555 1555 2.28 LINK OD2 ASP A 194 CA CA A 303 1555 1555 2.43 LINK ND1 HIS A 196 ZN ZN A 302 1555 1555 2.05 LINK OD1 ASP A 198 CA CA A 305 1555 1555 2.32 LINK O GLU A 199 CA CA A 304 1555 1555 2.36 LINK OE2 GLU A 199 CA CA A 304 1555 1555 2.34 LINK O GLU A 201 CA CA A 304 1555 1555 2.39 LINK OE2 GLU A 201 CA CA A 305 1555 1555 2.25 LINK NE2 HIS A 218 ZN ZN A 301 1555 1555 2.06 LINK NE2 HIS A 222 ZN ZN A 301 1555 1555 2.06 LINK NE2 HIS A 228 ZN ZN A 301 1555 1555 2.07 LINK ZN ZN A 301 O24A56O A 306 1555 1555 2.50 LINK ZN ZN A 301 O24B56O A 306 1555 1555 2.14 LINK ZN ZN A 301 O23A56O A 306 1555 1555 2.06 LINK ZN ZN A 301 O23B56O A 306 1555 1555 2.00 LINK CA CA A 303 O HOH A 441 1555 1555 2.29 LINK CA CA A 303 O HOH A 456 1555 1555 2.40 LINK CA CA A 304 O HOH A 552 1555 1555 2.39 LINK CA CA A 304 O HOH A 588 1555 1555 2.42 SITE 1 AC1 4 HIS A 218 HIS A 222 HIS A 228 56O A 306 SITE 1 AC2 4 HIS A 168 ASP A 170 HIS A 183 HIS A 196 SITE 1 AC3 6 ASP A 158 GLY A 190 GLY A 192 ASP A 194 SITE 2 AC3 6 HOH A 441 HOH A 456 SITE 1 AC4 5 ASP A 124 GLU A 199 GLU A 201 HOH A 552 SITE 2 AC4 5 HOH A 588 SITE 1 AC5 6 ASP A 175 GLY A 176 GLY A 178 ILE A 180 SITE 2 AC5 6 ASP A 198 GLU A 201 SITE 1 AC6 33 THR A 154 GLY A 155 GLY A 178 GLY A 179 SITE 2 AC6 33 ILE A 180 LEU A 181 ALA A 182 THR A 215 SITE 3 AC6 33 HIS A 218 GLU A 219 HIS A 222 HIS A 228 SITE 4 AC6 33 PRO A 232 LYS A 233 ALA A 234 VAL A 235 SITE 5 AC6 33 PHE A 237 PRO A 238 THR A 239 TYR A 240 SITE 6 AC6 33 LYS A 241 VAL A 243 PHE A 248 ZN A 301 SITE 7 AC6 33 HOH A 401 HOH A 404 HOH A 406 HOH A 407 SITE 8 AC6 33 HOH A 411 HOH A 416 HOH A 422 HOH A 424 SITE 9 AC6 33 HOH A 578 CRYST1 68.900 63.100 36.790 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014514 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015848 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027181 0.00000