HEADER LYASE 05-AUG-15 5D2G TITLE 4-OXALOCROTONATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA G7 - COMPLEXED TITLE 2 WITH MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-OXALOCROTONATE DECARBOXYLASE NAHK; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.1.77; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: NAHK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A-TEV KEYWDS NAPHTHALENE DEGRADATION, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.L.GUIMARAES,R.A.P.NAGEM REVDAT 5 27-SEP-23 5D2G 1 LINK REVDAT 4 08-JAN-20 5D2G 1 REMARK REVDAT 3 17-APR-19 5D2G 1 JRNL REMARK REVDAT 2 25-MAY-16 5D2G 1 JRNL REVDAT 1 04-MAY-16 5D2G 0 JRNL AUTH S.L.GUIMARAES,J.B.COITINHO,D.M.COSTA,S.S.ARAUJO,C.P.WHITMAN, JRNL AUTH 2 R.A.NAGEM JRNL TITL CRYSTAL STRUCTURES OF APO AND LIGANDED 4-OXALOCROTONATE JRNL TITL 2 DECARBOXYLASE UNCOVER A STRUCTURAL BASIS FOR THE JRNL TITL 3 METAL-ASSISTED DECARBOXYLATION OF A VINYLOGOUS BETA-KETO JRNL TITL 4 ACID. JRNL REF BIOCHEMISTRY V. 55 2632 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27082660 JRNL DOI 10.1021/ACS.BIOCHEM.6B00050 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 18912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4612 - 3.6277 0.98 2807 148 0.1342 0.1601 REMARK 3 2 3.6277 - 2.8797 0.98 2662 139 0.1396 0.2024 REMARK 3 3 2.8797 - 2.5157 0.98 2593 155 0.1537 0.2212 REMARK 3 4 2.5157 - 2.2857 0.99 2662 121 0.1523 0.1935 REMARK 3 5 2.2857 - 2.1219 1.00 2630 141 0.1575 0.2238 REMARK 3 6 2.1219 - 1.9968 0.97 2559 134 0.1948 0.2606 REMARK 3 7 1.9968 - 1.8968 0.78 2048 113 0.2571 0.2914 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2060 REMARK 3 ANGLE : 1.211 2783 REMARK 3 CHIRALITY : 0.077 321 REMARK 3 PLANARITY : 0.005 361 REMARK 3 DIHEDRAL : 12.038 746 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3418 20.8037 17.4591 REMARK 3 T TENSOR REMARK 3 T11: 0.0936 T22: 0.1400 REMARK 3 T33: 0.0667 T12: -0.0053 REMARK 3 T13: -0.0012 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 1.3842 L22: 7.5892 REMARK 3 L33: 5.4979 L12: 0.9916 REMARK 3 L13: -1.5226 L23: -5.6554 REMARK 3 S TENSOR REMARK 3 S11: 0.1018 S12: 0.0218 S13: 0.0665 REMARK 3 S21: 0.1419 S22: -0.1194 S23: -0.1889 REMARK 3 S31: -0.2287 S32: 0.2681 S33: -0.0016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5839 18.1986 17.1329 REMARK 3 T TENSOR REMARK 3 T11: 0.0810 T22: 0.0584 REMARK 3 T33: 0.0664 T12: -0.0403 REMARK 3 T13: 0.0119 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 2.0376 L22: 1.4487 REMARK 3 L33: 3.2584 L12: -0.5523 REMARK 3 L13: 0.6633 L23: -0.2865 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: 0.0556 S13: 0.0847 REMARK 3 S21: -0.0439 S22: 0.0161 S23: -0.0075 REMARK 3 S31: -0.1198 S32: -0.0015 S33: -0.0152 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1403 11.7654 11.2392 REMARK 3 T TENSOR REMARK 3 T11: 0.1113 T22: 0.1117 REMARK 3 T33: 0.0889 T12: -0.0081 REMARK 3 T13: 0.0337 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 3.6023 L22: 1.2139 REMARK 3 L33: 3.5193 L12: 0.6717 REMARK 3 L13: 1.7442 L23: -0.2156 REMARK 3 S TENSOR REMARK 3 S11: 0.1041 S12: -0.1388 S13: 0.4365 REMARK 3 S21: -0.0251 S22: -0.0635 S23: 0.1297 REMARK 3 S31: -0.1063 S32: -0.3267 S33: -0.0017 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1975 4.9331 14.8787 REMARK 3 T TENSOR REMARK 3 T11: 0.0522 T22: 0.0830 REMARK 3 T33: 0.0897 T12: 0.0084 REMARK 3 T13: 0.0110 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.9181 L22: 0.8181 REMARK 3 L33: 2.3100 L12: 0.2792 REMARK 3 L13: 0.4245 L23: -0.2775 REMARK 3 S TENSOR REMARK 3 S11: 0.0670 S12: 0.0229 S13: -0.0046 REMARK 3 S21: 0.0300 S22: -0.0299 S23: 0.0788 REMARK 3 S31: 0.1402 S32: -0.0971 S33: -0.0299 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9920 -6.9158 12.0622 REMARK 3 T TENSOR REMARK 3 T11: 0.2100 T22: 0.1549 REMARK 3 T33: 0.1493 T12: -0.0883 REMARK 3 T13: -0.0240 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.1895 L22: 1.9542 REMARK 3 L33: 5.0877 L12: -0.2745 REMARK 3 L13: 0.0690 L23: 0.3190 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: 0.3245 S13: -0.1770 REMARK 3 S21: -0.3309 S22: 0.0204 S23: -0.0731 REMARK 3 S31: 0.4329 S32: -0.4318 S33: 0.0067 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0418 4.8854 10.7796 REMARK 3 T TENSOR REMARK 3 T11: 0.0863 T22: 0.1093 REMARK 3 T33: 0.0889 T12: 0.0066 REMARK 3 T13: -0.0157 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.1620 L22: 0.4599 REMARK 3 L33: 3.0252 L12: 0.0438 REMARK 3 L13: -0.3976 L23: -0.7616 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: -0.0277 S13: -0.0264 REMARK 3 S21: 0.0173 S22: 0.0183 S23: 0.0330 REMARK 3 S31: 0.0249 S32: -0.0658 S33: -0.0666 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0527 -7.6311 22.2748 REMARK 3 T TENSOR REMARK 3 T11: 0.1976 T22: 0.1182 REMARK 3 T33: 0.1174 T12: -0.0273 REMARK 3 T13: -0.0212 T23: 0.0423 REMARK 3 L TENSOR REMARK 3 L11: 5.1342 L22: 3.1450 REMARK 3 L33: 6.3003 L12: 1.5999 REMARK 3 L13: 3.9999 L23: 2.3917 REMARK 3 S TENSOR REMARK 3 S11: 0.1961 S12: -0.3489 S13: -0.4173 REMARK 3 S21: -0.0649 S22: 0.0744 S23: 0.0757 REMARK 3 S31: 0.5800 S32: -0.4321 S33: -0.2640 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D2G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.437 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18966 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.897 REMARK 200 RESOLUTION RANGE LOW (A) : 40.452 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.828 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2EB4 REMARK 200 REMARK 200 REMARK: PARALLELEPIPED-SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE MONOHYDRATE, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.38300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.33300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.51750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.33300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.38300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.51750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 GLU A -10 REMARK 465 ASN A -9 REMARK 465 LEU A -8 REMARK 465 TYR A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 GLY A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OXT ACT A 313 O HOH A 401 2.13 REMARK 500 O HOH A 605 O HOH A 633 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 81 -178.99 -66.78 REMARK 500 ILE A 104 -65.70 -93.48 REMARK 500 ASP A 161 30.57 -90.57 REMARK 500 THR A 166 -40.36 -153.78 REMARK 500 LEU A 205 -3.72 68.08 REMARK 500 HIS A 207 112.73 -166.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 701 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A 702 DISTANCE = 6.79 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 109 OE2 REMARK 620 2 GLU A 111 OE1 91.1 REMARK 620 3 GLU A 142 OE1 93.8 104.2 REMARK 620 4 HOH A 478 O 80.8 93.1 162.0 REMARK 620 5 HOH A 480 O 171.8 90.8 93.4 91.2 REMARK 620 6 HOH A 488 O 87.5 162.3 93.5 69.3 88.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 313 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D2F RELATED DB: PDB REMARK 900 5D2F CONTAINS THE SAME PROTEIN IN APO FORM REMARK 900 RELATED ID: 5D2H RELATED DB: PDB REMARK 900 RELATED ID: 5D2I RELATED DB: PDB REMARK 900 RELATED ID: 5D2J RELATED DB: PDB REMARK 900 RELATED ID: 5D2K RELATED DB: PDB DBREF 5D2G A 1 264 UNP Q1XGK3 Q1XGK3_PSEPU 1 264 SEQADV 5D2G MET A -18 UNP Q1XGK3 INITIATING METHIONINE SEQADV 5D2G GLY A -17 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G HIS A -16 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G HIS A -15 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G HIS A -14 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G HIS A -13 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G HIS A -12 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G HIS A -11 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G GLU A -10 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G ASN A -9 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G LEU A -8 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G TYR A -7 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G PHE A -6 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G GLN A -5 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G GLY A -4 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G HIS A -3 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G MET A -2 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G ALA A -1 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G SER A 0 UNP Q1XGK3 EXPRESSION TAG SEQADV 5D2G PRO A 155 UNP Q1XGK3 LEU 155 ENGINEERED MUTATION SEQRES 1 A 283 MET GLY HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE SEQRES 2 A 283 GLN GLY HIS MET ALA SER MET ASN ARG THR LEU THR ARG SEQRES 3 A 283 GLU GLN VAL LEU ALA LEU ALA GLU HIS ILE GLU ASN ALA SEQRES 4 A 283 GLU LEU ASN VAL HIS ASP ILE GLY LYS VAL THR ASN ASP SEQRES 5 A 283 PHE PRO GLU MET THR PHE ALA ASP ALA TYR ASP VAL GLN SEQRES 6 A 283 TRP GLU ILE ARG ARG ARG LYS GLU ALA ARG GLY ASN LYS SEQRES 7 A 283 ILE VAL GLY LEU LYS MET GLY LEU THR SER TRP ALA LYS SEQRES 8 A 283 MET ALA GLN MET GLY VAL GLU THR PRO ILE TYR GLY PHE SEQRES 9 A 283 LEU ALA ASP TYR PHE SER VAL PRO ASP GLY GLY VAL VAL SEQRES 10 A 283 ASP CYS SER LYS LEU ILE HIS PRO LYS ILE GLU ALA GLU SEQRES 11 A 283 ILE SER VAL VAL THR LYS ALA PRO LEU HIS GLY PRO GLY SEQRES 12 A 283 CYS HIS LEU GLY ASP VAL ILE ALA ALA ILE ASP TYR VAL SEQRES 13 A 283 ILE PRO THR VAL GLU VAL ILE ASP SER ARG TYR GLU ASN SEQRES 14 A 283 PHE LYS PHE ASP PRO ILE SER VAL VAL ALA ASP ASN ALA SEQRES 15 A 283 SER SER THR ARG PHE ILE THR GLY GLY ARG MET ALA SER SEQRES 16 A 283 LEU GLU GLU VAL ASP LEU ARG THR LEU GLY VAL VAL MET SEQRES 17 A 283 GLU LYS ASN GLY GLU VAL VAL GLU LEU GLY ALA GLY ALA SEQRES 18 A 283 ALA VAL LEU GLY HIS PRO LEU SER SER VAL ALA MET LEU SEQRES 19 A 283 ALA ASN LEU LEU ALA GLU ARG GLY GLU HIS ILE PRO ALA SEQRES 20 A 283 GLY THR PHE ILE MET THR GLY GLY ILE THR ALA ALA VAL SEQRES 21 A 283 PRO VAL ALA PRO GLY ASP ASN ILE THR VAL ARG TYR GLN SEQRES 22 A 283 GLY LEU GLY SER VAL SER ALA ARG PHE ILE HET MG A 301 1 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET CL A 310 1 HET CL A 311 1 HET SO4 A 312 5 HET ACT A 313 4 HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG MG 2+ FORMUL 3 EDO 8(C2 H6 O2) FORMUL 11 CL 2(CL 1-) FORMUL 13 SO4 O4 S 2- FORMUL 14 ACT C2 H3 O2 1- FORMUL 15 HOH *302(H2 O) HELIX 1 AA1 THR A 6 ASN A 23 1 18 HELIX 2 AA2 LYS A 29 ASP A 33 5 5 HELIX 3 AA3 THR A 38 ARG A 56 1 19 HELIX 4 AA4 SER A 69 MET A 76 1 8 HELIX 5 AA5 SER A 101 LEU A 103 5 3 HELIX 6 AA6 HIS A 126 ALA A 133 1 8 HELIX 7 AA7 ASP A 154 ASP A 161 1 8 HELIX 8 AA8 ASP A 181 THR A 184 5 4 HELIX 9 AA9 ALA A 202 VAL A 204 5 3 HELIX 10 AB1 HIS A 207 GLU A 221 1 15 SHEET 1 AA1 7 ILE A 82 ALA A 87 0 SHEET 2 AA1 7 ILE A 60 GLY A 66 -1 N GLY A 66 O ILE A 82 SHEET 3 AA1 7 PHE A 231 MET A 233 1 O MET A 233 N LEU A 63 SHEET 4 AA1 7 LYS A 107 THR A 116 -1 N VAL A 114 O ILE A 232 SHEET 5 AA1 7 ILE A 134 ILE A 144 -1 O ASP A 135 N VAL A 115 SHEET 6 AA1 7 SER A 165 THR A 170 -1 O ILE A 169 N VAL A 141 SHEET 7 AA1 7 SER A 91 VAL A 92 1 N VAL A 92 O PHE A 168 SHEET 1 AA2 5 ILE A 82 ALA A 87 0 SHEET 2 AA2 5 ILE A 60 GLY A 66 -1 N GLY A 66 O ILE A 82 SHEET 3 AA2 5 PHE A 231 MET A 233 1 O MET A 233 N LEU A 63 SHEET 4 AA2 5 LYS A 107 THR A 116 -1 N VAL A 114 O ILE A 232 SHEET 5 AA2 5 VAL A 241 PRO A 242 -1 O VAL A 241 N ILE A 108 SHEET 1 AA3 5 VAL A 97 ASP A 99 0 SHEET 2 AA3 5 GLY A 257 ILE A 264 1 O ARG A 262 N VAL A 98 SHEET 3 AA3 5 ASN A 248 TYR A 253 -1 N VAL A 251 O VAL A 259 SHEET 4 AA3 5 GLY A 186 LYS A 191 -1 N VAL A 188 O ARG A 252 SHEET 5 AA3 5 GLU A 194 ALA A 200 -1 O GLU A 197 N MET A 189 LINK OE2 GLU A 109 MG MG A 301 1555 1555 1.96 LINK OE1 GLU A 111 MG MG A 301 1555 1555 1.91 LINK OE1 GLU A 142 MG MG A 301 1555 1555 1.93 LINK MG MG A 301 O HOH A 478 1555 1555 2.13 LINK MG MG A 301 O HOH A 480 1555 1555 2.03 LINK MG MG A 301 O HOH A 488 1555 1555 1.92 CISPEP 1 GLY A 122 PRO A 123 0 -0.46 SITE 1 AC1 7 MET A 65 GLU A 109 GLU A 111 GLU A 142 SITE 2 AC1 7 HOH A 478 HOH A 480 HOH A 488 SITE 1 AC2 6 GLY A 66 LEU A 67 GLU A 109 ALA A 163 SITE 2 AC2 6 HOH A 488 HOH A 562 SITE 1 AC3 7 TYR A 43 TYR A 83 LEU A 218 GLU A 221 SITE 2 AC3 7 ARG A 222 EDO A 305 HOH A 442 SITE 1 AC4 8 TYR A 148 ASN A 150 LYS A 152 PHE A 153 SITE 2 AC4 8 ASP A 154 VAL A 158 HOH A 404 HOH A 513 SITE 1 AC5 6 PHE A 39 THR A 80 LEU A 218 EDO A 303 SITE 2 AC5 6 HOH A 420 HOH A 428 SITE 1 AC6 6 ARG A 50 GLY A 62 THR A 230 HOH A 475 SITE 2 AC6 6 HOH A 477 HOH A 527 SITE 1 AC7 5 GLY A 57 ASN A 58 ASP A 88 HOH A 532 SITE 2 AC7 5 HOH A 567 SITE 1 AC8 5 GLU A 48 ARG A 52 HOH A 520 HOH A 536 SITE 2 AC8 5 HOH A 577 SITE 1 AC9 5 ASN A 192 GLY A 193 ASN A 248 HOH A 413 SITE 2 AC9 5 HOH A 418 SITE 1 AD1 3 ASP A 99 ARG A 167 HOH A 556 SITE 1 AD2 4 ARG A 51 HIS A 121 HOH A 552 HOH A 629 SITE 1 AD3 4 ASN A 150 PHE A 151 LYS A 152 HOH A 450 SITE 1 AD4 4 THR A 6 ARG A 7 HOH A 401 HOH A 538 CRYST1 42.766 45.035 124.666 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023383 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008021 0.00000