HEADER TRANSCRIPTION/DNA 06-AUG-15 5D2Q TITLE CRYSTAL STRUCTURE OF STPR FROM BOMBYX MORI IN COMPLEX WITH 20-BP DNA TITLE 2 DERIVED FROM +290 SITE OF THE FIBROIN GENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROIN-MODULATOR-BINDING PROTEIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 99-193; COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (40-MER); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: SILK MOTH; SOURCE 4 ORGANISM_TAXID: 7091; SOURCE 5 GENE: FMBP-1, FMBP-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS PROTEIN-DNA COMPLEX, ALL A-HELIX DNA MAJOR GROOVE BINDING, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.CHENG REVDAT 1 23-MAR-16 5D2Q 0 JRNL AUTH L.Y.YU,W.CHENG,K.ZHOU,W.F.LI,H.M.YU,X.GAO,X.SHEN,Q.WU, JRNL AUTH 2 Y.CHEN,C.Z.ZHOU JRNL TITL STRUCTURES OF AN ALL-ALPHA PROTEIN RUNNING ALONG THE DNA JRNL TITL 2 MAJOR GROOVE. JRNL REF NUCLEIC ACIDS RES. 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 26939889 JRNL DOI 10.1093/NAR/GKW133 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 10310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 523 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 724 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4290 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 584 REMARK 3 NUCLEIC ACID ATOMS : 814 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.64000 REMARK 3 B22 (A**2) : 2.64000 REMARK 3 B33 (A**2) : -5.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.342 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.249 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.299 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1510 ; 0.016 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 1042 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2205 ; 1.792 ; 1.465 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2407 ; 2.270 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 77 ; 6.569 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 29 ;26.418 ;20.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 107 ;19.412 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;11.569 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 208 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1164 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 331 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 311 ; 5.115 ; 4.473 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 310 ; 5.072 ; 4.472 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 387 ; 7.589 ; 6.672 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 388 ; 7.597 ; 6.678 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1199 ; 4.701 ; 3.885 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1198 ; 4.698 ; 3.884 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1818 ; 6.912 ; 5.791 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2006 ; 9.695 ;34.257 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1996 ; 9.693 ;34.217 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5227 7.3690 -58.5095 REMARK 3 T TENSOR REMARK 3 T11: 0.7406 T22: 0.3039 REMARK 3 T33: 0.5923 T12: 0.0890 REMARK 3 T13: -0.4450 T23: -0.2337 REMARK 3 L TENSOR REMARK 3 L11: 13.8281 L22: 86.2000 REMARK 3 L33: 1.2800 L12: 34.5053 REMARK 3 L13: -4.2056 L23: -10.4983 REMARK 3 S TENSOR REMARK 3 S11: 0.7720 S12: -0.3172 S13: 1.3437 REMARK 3 S21: 1.1025 S22: -0.5895 S23: 3.5384 REMARK 3 S31: -0.1552 S32: 0.0855 S33: -0.1825 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9485 -2.4915 -55.1175 REMARK 3 T TENSOR REMARK 3 T11: 0.2962 T22: 0.3195 REMARK 3 T33: 0.3368 T12: -0.1321 REMARK 3 T13: -0.0175 T23: 0.1586 REMARK 3 L TENSOR REMARK 3 L11: 3.6088 L22: 4.6560 REMARK 3 L33: 20.3959 L12: -4.0961 REMARK 3 L13: -8.5784 L23: 9.7398 REMARK 3 S TENSOR REMARK 3 S11: -0.1943 S12: 0.2681 S13: -0.1914 REMARK 3 S21: 0.2041 S22: -0.2509 S23: 0.2245 REMARK 3 S31: 0.4827 S32: -0.6364 S33: 0.4451 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 124 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4318 -8.7994 -45.8296 REMARK 3 T TENSOR REMARK 3 T11: 0.4517 T22: 0.1032 REMARK 3 T33: 0.4421 T12: -0.0212 REMARK 3 T13: -0.1524 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 10.2971 L22: 46.3406 REMARK 3 L33: 29.1815 L12: -21.4837 REMARK 3 L13: -12.2615 L23: 20.9039 REMARK 3 S TENSOR REMARK 3 S11: 0.8692 S12: 0.2408 S13: -0.1515 REMARK 3 S21: -1.8855 S22: -0.1345 S23: 0.5716 REMARK 3 S31: -0.4083 S32: -1.3427 S33: -0.7347 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 129 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5528 5.0276 -39.1613 REMARK 3 T TENSOR REMARK 3 T11: 0.2092 T22: 0.1210 REMARK 3 T33: 0.2660 T12: -0.0014 REMARK 3 T13: 0.0308 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.1397 L22: 13.1279 REMARK 3 L33: 5.1930 L12: -0.2682 REMARK 3 L13: -0.0689 L23: 5.5929 REMARK 3 S TENSOR REMARK 3 S11: -0.0683 S12: 0.0414 S13: 0.1516 REMARK 3 S21: -0.5964 S22: 0.2360 S23: -0.4678 REMARK 3 S31: -0.1109 S32: 0.2822 S33: -0.1677 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): -1.4500 15.0754 -32.0824 REMARK 3 T TENSOR REMARK 3 T11: 0.1362 T22: 0.1069 REMARK 3 T33: 0.2266 T12: 0.0763 REMARK 3 T13: -0.0146 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 8.6954 L22: 2.7618 REMARK 3 L33: 1.2482 L12: 4.8866 REMARK 3 L13: 0.9520 L23: 0.5138 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: 0.2072 S13: 0.2318 REMARK 3 S21: -0.0123 S22: 0.0736 S23: 0.1372 REMARK 3 S31: -0.0750 S32: 0.0151 S33: -0.0947 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2146 -1.1740 -22.4203 REMARK 3 T TENSOR REMARK 3 T11: 0.1844 T22: 0.2067 REMARK 3 T33: 0.3393 T12: -0.0456 REMARK 3 T13: 0.0274 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 6.1283 L22: 1.7439 REMARK 3 L33: 7.3328 L12: 0.9971 REMARK 3 L13: 5.2139 L23: -1.2788 REMARK 3 S TENSOR REMARK 3 S11: 0.3557 S12: -0.3536 S13: 0.0371 REMARK 3 S21: 0.1988 S22: -0.4599 S23: -0.0049 REMARK 3 S31: 0.1603 S32: 0.1778 S33: 0.1042 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -20 B -3 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2816 6.6372 -29.4965 REMARK 3 T TENSOR REMARK 3 T11: 0.2436 T22: 0.1366 REMARK 3 T33: 0.2338 T12: 0.0357 REMARK 3 T13: -0.0026 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.8394 L22: 1.1535 REMARK 3 L33: 4.7416 L12: 0.2758 REMARK 3 L13: -2.2273 L23: 1.2621 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: 0.1625 S13: 0.3514 REMARK 3 S21: -0.0306 S22: 0.0679 S23: -0.0202 REMARK 3 S31: 0.2494 S32: -0.2229 S33: -0.0986 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 7 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6772 8.5664 -53.3718 REMARK 3 T TENSOR REMARK 3 T11: 0.2740 T22: 0.2386 REMARK 3 T33: 0.2265 T12: 0.0120 REMARK 3 T13: 0.0601 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.4906 L22: 3.8164 REMARK 3 L33: 8.1210 L12: 0.1426 REMARK 3 L13: -0.6751 L23: 0.6582 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: 0.1139 S13: 0.3118 REMARK 3 S21: 0.0629 S22: 0.4479 S23: -0.1969 REMARK 3 S31: 0.4797 S32: 0.1593 S33: -0.4892 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 20 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8491 7.4338 -23.5729 REMARK 3 T TENSOR REMARK 3 T11: 0.0887 T22: 0.0899 REMARK 3 T33: 0.2287 T12: 0.0006 REMARK 3 T13: 0.0063 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.7034 L22: 1.7076 REMARK 3 L33: 6.7118 L12: 0.1492 REMARK 3 L13: -1.2165 L23: 0.9694 REMARK 3 S TENSOR REMARK 3 S11: 0.0428 S12: -0.0190 S13: 0.1684 REMARK 3 S21: 0.1084 S22: 0.0386 S23: -0.0748 REMARK 3 S31: 0.3055 S32: -0.3201 S33: -0.0814 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5D2Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212553. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10911 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 16% GLYCEROL,0.2 M REMARK 280 AMMONIUM CITRATE PH7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.19000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 22.94500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 22.94500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 180.28500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 22.94500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 22.94500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.09500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 22.94500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 22.94500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 180.28500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 22.94500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 22.94500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.09500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 120.19000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 92 REMARK 465 HIS A 93 REMARK 465 HIS A 94 REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 GLU A 99 REMARK 465 THR A 100 REMARK 465 SER A 101 REMARK 465 GLU A 102 REMARK 465 GLU A 103 REMARK 465 ARG A 104 REMARK 465 ALA A 105 REMARK 465 ALA A 106 REMARK 465 ARG A 107 REMARK 465 LEU A 108 REMARK 465 ALA A 109 REMARK 465 LYS A 110 REMARK 465 MSE A 111 REMARK 465 SER A 112 REMARK 465 SER A 190 REMARK 465 LYS A 191 REMARK 465 LYS A 192 REMARK 465 SER A 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 114 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 119 CG CD1 CD2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 GLN A 126 CG CD OE1 NE2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 DA B 1 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 160 OP2 DA B 10 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B -17 O3' DA B -16 P -0.077 REMARK 500 DT B -14 O3' DC B -13 P -0.081 REMARK 500 DC B -13 O3' DT B -12 P -0.073 REMARK 500 DT B -12 O3' DA B -11 P -0.073 REMARK 500 DA B 12 O3' DG B 13 P -0.073 REMARK 500 DA B 14 O3' DT B 15 P -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 125 21.79 49.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 125 GLN A 126 138.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D23 RELATED DB: PDB REMARK 900 RELATED ID: 5D2S RELATED DB: PDB DBREF 5D2Q A 99 193 UNP Q5FBS0 Q5FBS0_BOMMO 99 193 DBREF 5D2Q B -20 20 PDB 5D2Q 5D2Q -20 20 SEQADV 5D2Q MSE A 92 UNP Q5FBS0 EXPRESSION TAG SEQADV 5D2Q HIS A 93 UNP Q5FBS0 EXPRESSION TAG SEQADV 5D2Q HIS A 94 UNP Q5FBS0 EXPRESSION TAG SEQADV 5D2Q HIS A 95 UNP Q5FBS0 EXPRESSION TAG SEQADV 5D2Q HIS A 96 UNP Q5FBS0 EXPRESSION TAG SEQADV 5D2Q HIS A 97 UNP Q5FBS0 EXPRESSION TAG SEQADV 5D2Q HIS A 98 UNP Q5FBS0 EXPRESSION TAG SEQRES 1 A 102 MSE HIS HIS HIS HIS HIS HIS GLU THR SER GLU GLU ARG SEQRES 2 A 102 ALA ALA ARG LEU ALA LYS MSE SER ALA TYR ALA ALA GLN SEQRES 3 A 102 ARG LEU ALA ASN GLU SER PRO GLU GLN ARG ALA THR ARG SEQRES 4 A 102 LEU LYS ARG MSE SER GLU TYR ALA ALA LYS ARG LEU SER SEQRES 5 A 102 SER GLU THR ARG GLU GLN ARG ALA ILE ARG LEU ALA ARG SEQRES 6 A 102 MSE SER ALA TYR ALA ALA ARG ARG LEU ALA ASN GLU THR SEQRES 7 A 102 PRO ALA GLN ARG GLN ALA ARG LEU LEU ARG MSE SER ALA SEQRES 8 A 102 TYR ALA ALA LYS ARG GLN ALA SER LYS LYS SER SEQRES 1 B 40 DG DA DT DG DA DA DT DC DT DA DT DG DT SEQRES 2 B 40 DA DA DA DT DA DC DT DA DG DT DA DT DT SEQRES 3 B 40 DT DA DC DA DT DA DG DA DT DT DC DA DT SEQRES 4 B 40 DC MODRES 5D2Q MSE A 134 MET MODIFIED RESIDUE MODRES 5D2Q MSE A 157 MET MODIFIED RESIDUE MODRES 5D2Q MSE A 180 MET MODIFIED RESIDUE HET MSE A 134 8 HET MSE A 157 8 HET MSE A 180 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 3 HOH *37(H2 O) HELIX 1 AA1 ALA A 115 ASN A 121 1 7 HELIX 2 AA2 GLN A 126 SER A 144 1 19 HELIX 3 AA3 THR A 146 ASN A 167 1 22 HELIX 4 AA4 THR A 169 ARG A 187 1 19 LINK C ARG A 133 N MSE A 134 1555 1555 1.33 LINK C MSE A 134 N SER A 135 1555 1555 1.33 LINK C ARG A 156 N MSE A 157 1555 1555 1.33 LINK C MSE A 157 N SER A 158 1555 1555 1.31 LINK C ARG A 179 N MSE A 180 1555 1555 1.32 LINK C MSE A 180 N SER A 181 1555 1555 1.32 CRYST1 45.890 45.890 240.380 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021791 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021791 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004160 0.00000