HEADER OXIDOREDUCTASE 07-AUG-15 5D4H TITLE HIGH-RESOLUTION NITRITE COMPLEX OF A COPPER NITRITE REDUCTASE TITLE 2 DETERMINED BY SYNCHROTRON RADIATION CRYSTALLOGRAPHY COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER-CONTAINING NITRITE REDUCTASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUE 40-376; COMPND 5 SYNONYM: CU-NIR; COMPND 6 EC: 1.7.2.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALCALIGENES FAECALIS; SOURCE 3 ORGANISM_TAXID: 511; SOURCE 4 GENE: NIRK, NIR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS COPPER, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.FUKUDA,K.M.TSE,T.NAKANE,T.NAKATSU,M.SUZUKI,M.SUGAHARA,S.INOUE, AUTHOR 2 T.MASUDA,F.YUMOTO,N.MATSUGAKI,E.NANGO,K.TONO,Y.JOTI,T.KAMESHIMA, AUTHOR 3 C.SONG,T.HATSUI,M.YABASHI,O.NUREKI,M.E.P.MURPHY,T.INOUE,S.IWATA, AUTHOR 4 E.MIZOHATA REVDAT 4 20-MAR-24 5D4H 1 LINK REVDAT 3 19-FEB-20 5D4H 1 JRNL REMARK REVDAT 2 22-JUN-16 5D4H 1 JRNL REVDAT 1 09-MAR-16 5D4H 0 JRNL AUTH Y.FUKUDA,K.M.TSE,T.NAKANE,T.NAKATSU,M.SUZUKI,M.SUGAHARA, JRNL AUTH 2 S.INOUE,T.MASUDA,F.YUMOTO,N.MATSUGAKI,E.NANGO,K.TONO,Y.JOTI, JRNL AUTH 3 T.KAMESHIMA,C.SONG,T.HATSUI,M.YABASHI,O.NUREKI,M.E.MURPHY, JRNL AUTH 4 T.INOUE,S.IWATA,E.MIZOHATA JRNL TITL REDOX-COUPLED PROTON TRANSFER MECHANISM IN NITRITE REDUCTASE JRNL TITL 2 REVEALED BY FEMTOSECOND CRYSTALLOGRAPHY JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 2928 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 26929369 JRNL DOI 10.1073/PNAS.1517770113 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 213512 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.125 REMARK 3 R VALUE (WORKING SET) : 0.123 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 11055 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 15618 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 790 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7750 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 155 REMARK 3 SOLVENT ATOMS : 893 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.043 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.045 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8304 ; 0.027 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11286 ; 2.422 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1055 ; 7.686 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 353 ;33.127 ;24.674 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1253 ;13.402 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;20.323 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1243 ; 0.175 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6357 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4171 ; 2.257 ; 1.550 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5241 ; 2.488 ; 2.338 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4133 ; 4.979 ; 1.874 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 13484 ; 4.319 ;14.769 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8304 ; 7.564 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 238 ;28.875 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 8769 ;13.768 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5D4H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.1 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 224672 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM ACETATE (PH 4.1) AND 7% REMARK 280 PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.70950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.89550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.08700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.89550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.70950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.08700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -116.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 LEU A 341 REMARK 465 VAL A 342 REMARK 465 PRO A 343 REMARK 465 ARG A 344 REMARK 465 MET B 3 REMARK 465 MET C 3 REMARK 465 PRO C 343 REMARK 465 ARG C 344 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 910 O HOH B 909 2.01 REMARK 500 O1 GOL C 505 O2 GOL C 509 2.04 REMARK 500 O HOH A 798 O HOH A 877 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 46 CD GLU A 46 OE2 0.070 REMARK 500 TYR A 177 CG TYR A 177 CD1 0.081 REMARK 500 TYR A 293 CE1 TYR A 293 CZ 0.081 REMARK 500 GLU A 313 CG GLU A 313 CD 0.092 REMARK 500 GLU B 46 CG GLU B 46 CD 0.095 REMARK 500 GLU B 82 CD GLU B 82 OE2 -0.078 REMARK 500 GLU B 160 CD GLU B 160 OE2 0.072 REMARK 500 TYR B 184 CE1 TYR B 184 CZ 0.084 REMARK 500 TYR B 196 CE1 TYR B 196 CZ 0.088 REMARK 500 GLU B 310 CD GLU B 310 OE1 -0.071 REMARK 500 GLU B 313 CD GLU B 313 OE1 -0.073 REMARK 500 GLU C 40 CD GLU C 40 OE2 -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 54 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 79 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 79 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 187 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 188 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 188 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 253 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP A 328 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 329 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 14 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B 98 CB - CG - OD1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG B 159 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 164 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 253 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 344 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 344 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG C 14 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP C 54 CB - CG - OD1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ASP C 54 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP C 98 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG C 159 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG C 159 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP C 188 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG C 253 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 TYR C 263 CB - CG - CD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP C 328 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 329 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 137 70.82 -157.39 REMARK 500 LEU A 227 52.50 -97.68 REMARK 500 ALA B 137 73.04 -155.75 REMARK 500 LEU B 227 56.86 -110.30 REMARK 500 ALA C 137 71.96 -160.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 306 ASN A 307 145.09 REMARK 500 HIS B 306 ASN B 307 143.66 REMARK 500 HIS C 306 ASN C 307 145.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 912 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH A 913 DISTANCE = 8.05 ANGSTROMS REMARK 525 HOH A 914 DISTANCE = 8.82 ANGSTROMS REMARK 525 HOH B 912 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH B 913 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 914 DISTANCE = 6.78 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 95 ND1 REMARK 620 2 CYS A 136 SG 131.9 REMARK 620 3 HIS A 145 ND1 99.2 107.6 REMARK 620 4 MET A 150 SD 85.8 105.9 128.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 100 NE2 REMARK 620 2 HIS A 135 NE2 105.6 REMARK 620 3 NO2 A 503 N 128.3 116.6 REMARK 620 4 NO2 A 503 O1 161.4 87.2 33.7 REMARK 620 5 NO2 A 503 O2 95.3 114.6 41.1 66.7 REMARK 620 6 HIS C 306 NE2 97.7 114.3 91.2 88.9 123.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 306 NE2 REMARK 620 2 NO2 A 504 N 91.9 REMARK 620 3 NO2 A 504 O1 89.1 34.1 REMARK 620 4 NO2 A 504 O2 122.8 38.4 64.2 REMARK 620 5 HOH A 710 O 83.8 31.0 6.6 64.5 REMARK 620 6 HIS B 100 NE2 97.5 127.5 161.0 97.5 158.3 REMARK 620 7 HIS B 135 NE2 112.8 118.5 88.6 115.8 94.3 105.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 95 ND1 REMARK 620 2 CYS B 136 SG 131.0 REMARK 620 3 HIS B 145 ND1 99.3 108.7 REMARK 620 4 MET B 150 SD 86.4 105.7 127.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 306 NE2 REMARK 620 2 NO2 B 503 N 95.4 REMARK 620 3 NO2 B 503 O1 90.5 34.6 REMARK 620 4 NO2 B 503 O2 126.5 38.0 64.6 REMARK 620 5 HOH B 706 O 83.1 39.1 7.9 71.7 REMARK 620 6 HIS C 100 NE2 97.6 122.3 156.5 93.2 161.0 REMARK 620 7 HIS C 135 NE2 114.3 119.8 91.6 113.1 92.0 104.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 95 ND1 REMARK 620 2 CYS C 136 SG 132.1 REMARK 620 3 HIS C 145 ND1 98.8 105.4 REMARK 620 4 MET C 150 SD 86.0 106.7 130.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO2 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO2 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO2 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 509 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D4I RELATED DB: PDB REMARK 900 RELATED ID: 5D4J RELATED DB: PDB DBREF 5D4H A 4 340 UNP P38501 NIR_ALCFA 40 376 DBREF 5D4H B 4 340 UNP P38501 NIR_ALCFA 40 376 DBREF 5D4H C 4 340 UNP P38501 NIR_ALCFA 40 376 SEQADV 5D4H MET A 3 UNP P38501 INITIATING METHIONINE SEQADV 5D4H LEU A 341 UNP P38501 EXPRESSION TAG SEQADV 5D4H VAL A 342 UNP P38501 EXPRESSION TAG SEQADV 5D4H PRO A 343 UNP P38501 EXPRESSION TAG SEQADV 5D4H ARG A 344 UNP P38501 EXPRESSION TAG SEQADV 5D4H MET B 3 UNP P38501 INITIATING METHIONINE SEQADV 5D4H LEU B 341 UNP P38501 EXPRESSION TAG SEQADV 5D4H VAL B 342 UNP P38501 EXPRESSION TAG SEQADV 5D4H PRO B 343 UNP P38501 EXPRESSION TAG SEQADV 5D4H ARG B 344 UNP P38501 EXPRESSION TAG SEQADV 5D4H MET C 3 UNP P38501 INITIATING METHIONINE SEQADV 5D4H LEU C 341 UNP P38501 EXPRESSION TAG SEQADV 5D4H VAL C 342 UNP P38501 EXPRESSION TAG SEQADV 5D4H PRO C 343 UNP P38501 EXPRESSION TAG SEQADV 5D4H ARG C 344 UNP P38501 EXPRESSION TAG SEQRES 1 A 342 MET ALA THR ALA ALA GLU ILE ALA ALA LEU PRO ARG GLN SEQRES 2 A 342 LYS VAL GLU LEU VAL ASP PRO PRO PHE VAL HIS ALA HIS SEQRES 3 A 342 SER GLN VAL ALA GLU GLY GLY PRO LYS VAL VAL GLU PHE SEQRES 4 A 342 THR MET VAL ILE GLU GLU LYS LYS ILE VAL ILE ASP ASP SEQRES 5 A 342 ALA GLY THR GLU VAL HIS ALA MET ALA PHE ASN GLY THR SEQRES 6 A 342 VAL PRO GLY PRO LEU MET VAL VAL HIS GLN ASP ASP TYR SEQRES 7 A 342 LEU GLU LEU THR LEU ILE ASN PRO GLU THR ASN THR LEU SEQRES 8 A 342 MET HIS ASN ILE ASP PHE HIS ALA ALA THR GLY ALA LEU SEQRES 9 A 342 GLY GLY GLY GLY LEU THR GLU ILE ASN PRO GLY GLU LYS SEQRES 10 A 342 THR ILE LEU ARG PHE LYS ALA THR LYS PRO GLY VAL PHE SEQRES 11 A 342 VAL TYR HIS CYS ALA PRO PRO GLY MET VAL PRO TRP HIS SEQRES 12 A 342 VAL VAL SER GLY MET ASN GLY ALA ILE MET VAL LEU PRO SEQRES 13 A 342 ARG GLU GLY LEU HIS ASP GLY LYS GLY LYS ALA LEU THR SEQRES 14 A 342 TYR ASP LYS ILE TYR TYR VAL GLY GLU GLN ASP PHE TYR SEQRES 15 A 342 VAL PRO ARG ASP GLU ASN GLY LYS TYR LYS LYS TYR GLU SEQRES 16 A 342 ALA PRO GLY ASP ALA TYR GLU ASP THR VAL LYS VAL MET SEQRES 17 A 342 ARG THR LEU THR PRO THR HIS VAL VAL PHE ASN GLY ALA SEQRES 18 A 342 VAL GLY ALA LEU THR GLY ASP LYS ALA MET THR ALA ALA SEQRES 19 A 342 VAL GLY GLU LYS VAL LEU ILE VAL HIS SER GLN ALA ASN SEQRES 20 A 342 ARG ASP THR ARG PRO HIS LEU ILE GLY GLY HIS GLY ASP SEQRES 21 A 342 TYR VAL TRP ALA THR GLY LYS PHE ASN THR PRO PRO ASP SEQRES 22 A 342 VAL ASP GLN GLU THR TRP PHE ILE PRO GLY GLY ALA ALA SEQRES 23 A 342 GLY ALA ALA PHE TYR THR PHE GLN GLN PRO GLY ILE TYR SEQRES 24 A 342 ALA TYR VAL ASN HIS ASN LEU ILE GLU ALA PHE GLU LEU SEQRES 25 A 342 GLY ALA ALA ALA HIS PHE LYS VAL THR GLY GLU TRP ASN SEQRES 26 A 342 ASP ASP LEU MET THR SER VAL LEU ALA PRO SER GLY THR SEQRES 27 A 342 LEU VAL PRO ARG SEQRES 1 B 342 MET ALA THR ALA ALA GLU ILE ALA ALA LEU PRO ARG GLN SEQRES 2 B 342 LYS VAL GLU LEU VAL ASP PRO PRO PHE VAL HIS ALA HIS SEQRES 3 B 342 SER GLN VAL ALA GLU GLY GLY PRO LYS VAL VAL GLU PHE SEQRES 4 B 342 THR MET VAL ILE GLU GLU LYS LYS ILE VAL ILE ASP ASP SEQRES 5 B 342 ALA GLY THR GLU VAL HIS ALA MET ALA PHE ASN GLY THR SEQRES 6 B 342 VAL PRO GLY PRO LEU MET VAL VAL HIS GLN ASP ASP TYR SEQRES 7 B 342 LEU GLU LEU THR LEU ILE ASN PRO GLU THR ASN THR LEU SEQRES 8 B 342 MET HIS ASN ILE ASP PHE HIS ALA ALA THR GLY ALA LEU SEQRES 9 B 342 GLY GLY GLY GLY LEU THR GLU ILE ASN PRO GLY GLU LYS SEQRES 10 B 342 THR ILE LEU ARG PHE LYS ALA THR LYS PRO GLY VAL PHE SEQRES 11 B 342 VAL TYR HIS CYS ALA PRO PRO GLY MET VAL PRO TRP HIS SEQRES 12 B 342 VAL VAL SER GLY MET ASN GLY ALA ILE MET VAL LEU PRO SEQRES 13 B 342 ARG GLU GLY LEU HIS ASP GLY LYS GLY LYS ALA LEU THR SEQRES 14 B 342 TYR ASP LYS ILE TYR TYR VAL GLY GLU GLN ASP PHE TYR SEQRES 15 B 342 VAL PRO ARG ASP GLU ASN GLY LYS TYR LYS LYS TYR GLU SEQRES 16 B 342 ALA PRO GLY ASP ALA TYR GLU ASP THR VAL LYS VAL MET SEQRES 17 B 342 ARG THR LEU THR PRO THR HIS VAL VAL PHE ASN GLY ALA SEQRES 18 B 342 VAL GLY ALA LEU THR GLY ASP LYS ALA MET THR ALA ALA SEQRES 19 B 342 VAL GLY GLU LYS VAL LEU ILE VAL HIS SER GLN ALA ASN SEQRES 20 B 342 ARG ASP THR ARG PRO HIS LEU ILE GLY GLY HIS GLY ASP SEQRES 21 B 342 TYR VAL TRP ALA THR GLY LYS PHE ASN THR PRO PRO ASP SEQRES 22 B 342 VAL ASP GLN GLU THR TRP PHE ILE PRO GLY GLY ALA ALA SEQRES 23 B 342 GLY ALA ALA PHE TYR THR PHE GLN GLN PRO GLY ILE TYR SEQRES 24 B 342 ALA TYR VAL ASN HIS ASN LEU ILE GLU ALA PHE GLU LEU SEQRES 25 B 342 GLY ALA ALA ALA HIS PHE LYS VAL THR GLY GLU TRP ASN SEQRES 26 B 342 ASP ASP LEU MET THR SER VAL LEU ALA PRO SER GLY THR SEQRES 27 B 342 LEU VAL PRO ARG SEQRES 1 C 342 MET ALA THR ALA ALA GLU ILE ALA ALA LEU PRO ARG GLN SEQRES 2 C 342 LYS VAL GLU LEU VAL ASP PRO PRO PHE VAL HIS ALA HIS SEQRES 3 C 342 SER GLN VAL ALA GLU GLY GLY PRO LYS VAL VAL GLU PHE SEQRES 4 C 342 THR MET VAL ILE GLU GLU LYS LYS ILE VAL ILE ASP ASP SEQRES 5 C 342 ALA GLY THR GLU VAL HIS ALA MET ALA PHE ASN GLY THR SEQRES 6 C 342 VAL PRO GLY PRO LEU MET VAL VAL HIS GLN ASP ASP TYR SEQRES 7 C 342 LEU GLU LEU THR LEU ILE ASN PRO GLU THR ASN THR LEU SEQRES 8 C 342 MET HIS ASN ILE ASP PHE HIS ALA ALA THR GLY ALA LEU SEQRES 9 C 342 GLY GLY GLY GLY LEU THR GLU ILE ASN PRO GLY GLU LYS SEQRES 10 C 342 THR ILE LEU ARG PHE LYS ALA THR LYS PRO GLY VAL PHE SEQRES 11 C 342 VAL TYR HIS CYS ALA PRO PRO GLY MET VAL PRO TRP HIS SEQRES 12 C 342 VAL VAL SER GLY MET ASN GLY ALA ILE MET VAL LEU PRO SEQRES 13 C 342 ARG GLU GLY LEU HIS ASP GLY LYS GLY LYS ALA LEU THR SEQRES 14 C 342 TYR ASP LYS ILE TYR TYR VAL GLY GLU GLN ASP PHE TYR SEQRES 15 C 342 VAL PRO ARG ASP GLU ASN GLY LYS TYR LYS LYS TYR GLU SEQRES 16 C 342 ALA PRO GLY ASP ALA TYR GLU ASP THR VAL LYS VAL MET SEQRES 17 C 342 ARG THR LEU THR PRO THR HIS VAL VAL PHE ASN GLY ALA SEQRES 18 C 342 VAL GLY ALA LEU THR GLY ASP LYS ALA MET THR ALA ALA SEQRES 19 C 342 VAL GLY GLU LYS VAL LEU ILE VAL HIS SER GLN ALA ASN SEQRES 20 C 342 ARG ASP THR ARG PRO HIS LEU ILE GLY GLY HIS GLY ASP SEQRES 21 C 342 TYR VAL TRP ALA THR GLY LYS PHE ASN THR PRO PRO ASP SEQRES 22 C 342 VAL ASP GLN GLU THR TRP PHE ILE PRO GLY GLY ALA ALA SEQRES 23 C 342 GLY ALA ALA PHE TYR THR PHE GLN GLN PRO GLY ILE TYR SEQRES 24 C 342 ALA TYR VAL ASN HIS ASN LEU ILE GLU ALA PHE GLU LEU SEQRES 25 C 342 GLY ALA ALA ALA HIS PHE LYS VAL THR GLY GLU TRP ASN SEQRES 26 C 342 ASP ASP LEU MET THR SER VAL LEU ALA PRO SER GLY THR SEQRES 27 C 342 LEU VAL PRO ARG HET CU A 501 1 HET CU A 502 1 HET NO2 A 503 3 HET NO2 A 504 3 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HET GOL A 510 6 HET GOL A 511 6 HET GOL A 512 6 HET GOL A 513 6 HET GOL A 514 6 HET GOL A 515 6 HET ACY A 516 4 HET CU B 501 1 HET CU B 502 1 HET NO2 B 503 3 HET GOL B 504 6 HET GOL B 505 6 HET GOL B 506 6 HET GOL B 507 12 HET ACY B 508 4 HET CU C 501 1 HET CU C 502 1 HET GOL C 503 12 HET GOL C 504 6 HET GOL C 505 6 HET GOL C 506 12 HET GOL C 507 6 HET GOL C 508 6 HET GOL C 509 6 HETNAM CU COPPER (II) ION HETNAM NO2 NITRITE ION HETNAM GOL GLYCEROL HETNAM ACY ACETIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 CU 6(CU 2+) FORMUL 6 NO2 3(N O2 1-) FORMUL 8 GOL 22(C3 H8 O3) FORMUL 19 ACY 2(C2 H4 O2) FORMUL 37 HOH *893(H2 O) HELIX 1 AA1 THR A 5 ALA A 11 1 7 HELIX 2 AA2 GLY A 104 THR A 112 5 9 HELIX 3 AA3 MET A 141 SER A 148 1 8 HELIX 4 AA4 PRO A 199 ASP A 201 5 3 HELIX 5 AA5 ALA A 202 THR A 212 1 11 HELIX 6 AA6 THR A 228 ALA A 232 5 5 HELIX 7 AA7 ASN A 307 GLU A 313 1 7 HELIX 8 AA8 THR B 5 LEU B 12 1 8 HELIX 9 AA9 GLY B 104 THR B 112 5 9 HELIX 10 AB1 MET B 141 SER B 148 1 8 HELIX 11 AB2 ALA B 198 ASP B 201 5 4 HELIX 12 AB3 ALA B 202 THR B 212 1 11 HELIX 13 AB4 THR B 228 ALA B 232 5 5 HELIX 14 AB5 ASN B 307 GLU B 313 1 7 HELIX 15 AB6 THR C 5 LEU C 12 1 8 HELIX 16 AB7 GLY C 104 THR C 112 5 9 HELIX 17 AB8 MET C 141 SER C 148 1 8 HELIX 18 AB9 ALA C 198 ASP C 201 5 4 HELIX 19 AC1 ALA C 202 THR C 212 1 11 HELIX 20 AC2 THR C 228 ALA C 232 5 5 HELIX 21 AC3 ASN C 307 GLU C 313 1 7 SHEET 1 AA1 3 ARG A 14 LYS A 16 0 SHEET 2 AA1 3 VAL A 38 VAL A 51 1 O GLU A 40 N GLN A 15 SHEET 3 AA1 3 GLU A 58 PHE A 64 -1 O ALA A 63 N GLU A 46 SHEET 1 AA2 5 ARG A 14 LYS A 16 0 SHEET 2 AA2 5 VAL A 38 VAL A 51 1 O GLU A 40 N GLN A 15 SHEET 3 AA2 5 TYR A 80 ASN A 87 1 O GLU A 82 N VAL A 39 SHEET 4 AA2 5 GLU A 118 LYS A 125 -1 O GLU A 118 N ASN A 87 SHEET 5 AA2 5 MET C 331 SER C 338 -1 O THR C 332 N ARG A 123 SHEET 1 AA3 4 MET A 73 HIS A 76 0 SHEET 2 AA3 4 ASN A 151 LEU A 157 1 O MET A 155 N MET A 73 SHEET 3 AA3 4 GLY A 130 HIS A 135 -1 N GLY A 130 O VAL A 156 SHEET 4 AA3 4 ASP A 98 PHE A 99 -1 N ASP A 98 O HIS A 135 SHEET 1 AA4 6 HIS A 217 PHE A 220 0 SHEET 2 AA4 6 LYS A 174 PHE A 183 -1 N GLN A 181 O VAL A 219 SHEET 3 AA4 6 LYS A 240 GLN A 247 1 O VAL A 244 N VAL A 178 SHEET 4 AA4 6 ALA A 287 THR A 294 -1 O ALA A 291 N ILE A 243 SHEET 5 AA4 6 GLY A 261 TRP A 265 -1 N TYR A 263 O PHE A 292 SHEET 6 AA4 6 ASP A 275 GLN A 278 -1 O ASP A 275 N VAL A 264 SHEET 1 AA5 4 MET A 233 ALA A 236 0 SHEET 2 AA5 4 ALA A 317 THR A 323 1 O HIS A 319 N MET A 233 SHEET 3 AA5 4 GLY A 299 ASN A 305 -1 N TYR A 301 O PHE A 320 SHEET 4 AA5 4 PRO A 254 ILE A 257 -1 N ILE A 257 O ALA A 302 SHEET 1 AA6 5 MET A 331 GLY A 339 0 SHEET 2 AA6 5 GLU B 118 LYS B 125 -1 O ARG B 123 N THR A 332 SHEET 3 AA6 5 TYR B 80 ASN B 87 -1 N ASN B 87 O GLU B 118 SHEET 4 AA6 5 VAL B 38 VAL B 51 1 N VAL B 39 O GLU B 82 SHEET 5 AA6 5 ARG B 14 LYS B 16 1 N GLN B 15 O GLU B 40 SHEET 1 AA7 5 MET A 331 GLY A 339 0 SHEET 2 AA7 5 GLU B 118 LYS B 125 -1 O ARG B 123 N THR A 332 SHEET 3 AA7 5 TYR B 80 ASN B 87 -1 N ASN B 87 O GLU B 118 SHEET 4 AA7 5 VAL B 38 VAL B 51 1 N VAL B 39 O GLU B 82 SHEET 5 AA7 5 GLU B 58 PHE B 64 -1 O ALA B 63 N GLU B 46 SHEET 1 AA8 4 MET B 73 HIS B 76 0 SHEET 2 AA8 4 ASN B 151 LEU B 157 1 O LEU B 157 N VAL B 75 SHEET 3 AA8 4 GLY B 130 HIS B 135 -1 N GLY B 130 O VAL B 156 SHEET 4 AA8 4 ASP B 98 PHE B 99 -1 N ASP B 98 O HIS B 135 SHEET 1 AA9 6 HIS B 217 PHE B 220 0 SHEET 2 AA9 6 LYS B 174 PHE B 183 -1 N PHE B 183 O HIS B 217 SHEET 3 AA9 6 LYS B 240 GLN B 247 1 O VAL B 244 N VAL B 178 SHEET 4 AA9 6 ALA B 287 THR B 294 -1 O ALA B 291 N ILE B 243 SHEET 5 AA9 6 GLY B 261 TRP B 265 -1 N TYR B 263 O PHE B 292 SHEET 6 AA9 6 ASP B 275 GLN B 278 -1 O ASP B 275 N VAL B 264 SHEET 1 AB1 4 MET B 233 ALA B 236 0 SHEET 2 AB1 4 ALA B 317 THR B 323 1 O LYS B 321 N MET B 233 SHEET 3 AB1 4 GLY B 299 ASN B 305 -1 N TYR B 303 O ALA B 318 SHEET 4 AB1 4 PRO B 254 ILE B 257 -1 N ILE B 257 O ALA B 302 SHEET 1 AB2 5 MET B 331 GLY B 339 0 SHEET 2 AB2 5 GLU C 118 LYS C 125 -1 O ARG C 123 N THR B 332 SHEET 3 AB2 5 TYR C 80 ASN C 87 -1 N LEU C 85 O THR C 120 SHEET 4 AB2 5 VAL C 38 VAL C 51 1 N VAL C 39 O TYR C 80 SHEET 5 AB2 5 ARG C 14 LYS C 16 1 N GLN C 15 O GLU C 40 SHEET 1 AB3 5 MET B 331 GLY B 339 0 SHEET 2 AB3 5 GLU C 118 LYS C 125 -1 O ARG C 123 N THR B 332 SHEET 3 AB3 5 TYR C 80 ASN C 87 -1 N LEU C 85 O THR C 120 SHEET 4 AB3 5 VAL C 38 VAL C 51 1 N VAL C 39 O TYR C 80 SHEET 5 AB3 5 GLU C 58 PHE C 64 -1 O ALA C 63 N GLU C 46 SHEET 1 AB4 4 MET C 73 HIS C 76 0 SHEET 2 AB4 4 ASN C 151 LEU C 157 1 O LEU C 157 N VAL C 75 SHEET 3 AB4 4 GLY C 130 HIS C 135 -1 N GLY C 130 O VAL C 156 SHEET 4 AB4 4 ASP C 98 PHE C 99 -1 N ASP C 98 O HIS C 135 SHEET 1 AB5 2 LEU C 162 HIS C 163 0 SHEET 2 AB5 2 ALA C 169 LEU C 170 -1 O LEU C 170 N LEU C 162 SHEET 1 AB6 6 HIS C 217 PHE C 220 0 SHEET 2 AB6 6 LYS C 174 PHE C 183 -1 N GLN C 181 O VAL C 219 SHEET 3 AB6 6 LYS C 240 GLN C 247 1 O VAL C 244 N VAL C 178 SHEET 4 AB6 6 ALA C 287 THR C 294 -1 O TYR C 293 N VAL C 241 SHEET 5 AB6 6 GLY C 261 TRP C 265 -1 N TYR C 263 O PHE C 292 SHEET 6 AB6 6 ASP C 275 GLN C 278 -1 O ASP C 275 N VAL C 264 SHEET 1 AB7 4 MET C 233 ALA C 236 0 SHEET 2 AB7 4 ALA C 317 THR C 323 1 O LYS C 321 N MET C 233 SHEET 3 AB7 4 GLY C 299 ASN C 305 -1 N TYR C 303 O ALA C 318 SHEET 4 AB7 4 PRO C 254 ILE C 257 -1 N ILE C 257 O ALA C 302 LINK ND1 HIS A 95 CU CU A 501 1555 1555 2.05 LINK NE2 HIS A 100 CU CU A 502 1555 1555 2.02 LINK NE2 HIS A 135 CU CU A 502 1555 1555 2.02 LINK SG CYS A 136 CU CU A 501 1555 1555 2.20 LINK ND1 HIS A 145 CU CU A 501 1555 1555 2.07 LINK SD MET A 150 CU CU A 501 1555 1555 2.47 LINK NE2 HIS A 306 CU CU B 502 1555 1555 2.03 LINK CU CU A 502 N NO2 A 503 1555 1555 2.10 LINK CU CU A 502 O1 NO2 A 503 1555 1555 2.17 LINK CU CU A 502 O2 NO2 A 503 1555 1555 2.01 LINK CU CU A 502 NE2 HIS C 306 1555 1555 2.04 LINK N ANO2 A 504 CU CU B 502 1555 1555 2.17 LINK O1 ANO2 A 504 CU CU B 502 1555 1555 2.21 LINK O2 ANO2 A 504 CU CU B 502 1555 1555 2.09 LINK O BHOH A 710 CU CU B 502 1555 1555 2.14 LINK ND1 HIS B 95 CU CU B 501 1555 1555 2.02 LINK NE2 HIS B 100 CU CU B 502 1555 1555 1.98 LINK NE2 HIS B 135 CU CU B 502 1555 1555 2.04 LINK SG CYS B 136 CU CU B 501 1555 1555 2.21 LINK ND1 HIS B 145 CU CU B 501 1555 1555 2.04 LINK SD MET B 150 CU CU B 501 1555 1555 2.49 LINK NE2 HIS B 306 CU CU C 502 1555 1555 2.02 LINK N ANO2 B 503 CU CU C 502 1555 1555 2.21 LINK O1 ANO2 B 503 CU CU C 502 1555 1555 2.18 LINK O2 ANO2 B 503 CU CU C 502 1555 1555 2.12 LINK O BHOH B 706 CU CU C 502 1555 1555 2.15 LINK ND1 HIS C 95 CU CU C 501 1555 1555 2.03 LINK NE2 HIS C 100 CU CU C 502 1555 1555 2.02 LINK NE2 HIS C 135 CU CU C 502 1555 1555 2.02 LINK SG CYS C 136 CU CU C 501 1555 1555 2.20 LINK ND1 HIS C 145 CU CU C 501 1555 1555 1.98 LINK SD MET C 150 CU CU C 501 1555 1555 2.47 CISPEP 1 PRO A 22 PRO A 23 0 11.46 CISPEP 2 VAL A 68 PRO A 69 0 -3.92 CISPEP 3 PRO B 22 PRO B 23 0 8.44 CISPEP 4 VAL B 68 PRO B 69 0 -5.07 CISPEP 5 PRO C 22 PRO C 23 0 8.89 CISPEP 6 VAL C 68 PRO C 69 0 -1.30 SITE 1 AC1 4 HIS A 95 CYS A 136 HIS A 145 MET A 150 SITE 1 AC2 5 ASP A 98 HIS A 100 HIS A 135 NO2 A 503 SITE 2 AC2 5 HIS C 306 SITE 1 AC3 9 ASP A 98 HIS A 100 HIS A 135 CU A 502 SITE 2 AC3 9 HOH A 603 HIS C 255 ILE C 257 HIS C 306 SITE 3 AC3 9 LEU C 308 SITE 1 AC4 10 HIS A 255 ILE A 257 HIS A 306 LEU A 308 SITE 2 AC4 10 HOH A 710 ASP B 98 HIS B 100 HIS B 135 SITE 3 AC4 10 CU B 502 HOH B 606 SITE 1 AC5 6 ILE A 52 ASP A 53 ASP A 54 VAL A 224 SITE 2 AC5 6 HOH A 676 HOH A 814 SITE 1 AC6 7 TYR A 193 THR A 216 HIS A 217 GLU A 313 SITE 2 AC6 7 LEU A 314 HOH A 722 ARG B 211 SITE 1 AC7 6 VAL A 142 HOH A 603 HOH A 644 HOH A 702 SITE 2 AC7 6 ALA C 302 HOH C 796 SITE 1 AC8 9 LEU A 213 ARG A 250 HOH A 602 HOH A 621 SITE 2 AC8 9 HOH A 759 ARG C 253 ASN C 307 GLU C 310 SITE 3 AC8 9 HOH C 610 SITE 1 AC9 6 ASP A 230 LYS A 231 HOH A 607 HOH A 631 SITE 2 AC9 6 HOH A 686 HOH A 741 SITE 1 AD1 8 GLY A 229 ASP A 230 ALA A 232 THR A 234 SITE 2 AD1 8 LYS A 321 HOH A 615 HOH A 620 HOH A 774 SITE 1 AD2 5 PHE A 24 VAL A 25 LYS A 174 ILE A 175 SITE 2 AD2 5 HOH A 671 SITE 1 AD3 3 LYS A 174 THR A 234 HOH A 617 SITE 1 AD4 2 GLU A 46 LYS A 48 SITE 1 AD5 3 TRP A 326 THR A 332 SER A 333 SITE 1 AD6 1 HOH A 847 SITE 1 AD7 6 GLY A 140 MET A 141 VAL A 142 PRO A 143 SITE 2 AD7 6 TRP A 144 GLU C 313 SITE 1 AD8 4 HIS B 95 CYS B 136 HIS B 145 MET B 150 SITE 1 AD9 6 HIS A 306 NO2 A 504 HOH A 710 ASP B 98 SITE 2 AD9 6 HIS B 100 HIS B 135 SITE 1 AE1 9 HIS B 255 ILE B 257 HIS B 306 HOH B 706 SITE 2 AE1 9 ASP C 98 HIS C 100 HIS C 135 CU C 502 SITE 3 AE1 9 HOH C 609 SITE 1 AE2 6 ALA A 302 PRO B 139 VAL B 142 HOH B 633 SITE 2 AE2 6 HOH B 676 HOH B 748 SITE 1 AE3 8 VAL B 59 VAL B 147 SER B 148 PHE B 183 SITE 2 AE3 8 TYR B 184 THR B 206 HOH B 619 HOH B 704 SITE 1 AE4 6 TRP B 326 THR B 332 SER B 333 HOH B 625 SITE 2 AE4 6 HOH B 831 HOH B 908 SITE 1 AE5 7 TYR B 193 THR B 216 HIS B 217 VAL B 224 SITE 2 AE5 7 GLU B 313 LEU B 314 ARG C 211 SITE 1 AE6 7 GLU A 313 GLY B 140 MET B 141 VAL B 142 SITE 2 AE6 7 PRO B 143 TRP B 144 MET B 210 SITE 1 AE7 4 HIS C 95 CYS C 136 HIS C 145 MET C 150 SITE 1 AE8 6 HIS B 306 NO2 B 503 HOH B 706 ASP C 98 SITE 2 AE8 6 HIS C 100 HIS C 135 SITE 1 AE9 12 THR A 212 LEU A 213 THR A 214 THR B 212 SITE 2 AE9 12 LEU B 213 THR B 214 THR C 212 LEU C 213 SITE 3 AE9 12 THR C 214 HOH C 604 HOH C 606 HOH C 610 SITE 1 AF1 5 HOH B 687 PRO C 139 VAL C 142 HOH C 603 SITE 2 AF1 5 HOH C 628 SITE 1 AF2 4 TRP C 326 THR C 332 SER C 333 GOL C 509 SITE 1 AF3 5 ALA C 27 HIS C 28 GLN C 30 HOH C 607 SITE 2 AF3 5 HOH C 756 SITE 1 AF4 9 GLN C 15 HIS C 26 HIS C 28 LYS C 37 SITE 2 AF4 9 VAL C 39 VAL C 74 VAL C 75 HOH C 615 SITE 3 AF4 9 HOH C 767 SITE 1 AF5 8 ARG A 211 THR C 216 HIS C 217 VAL C 224 SITE 2 AF5 8 GLU C 313 LEU C 314 HOH C 602 HOH C 665 SITE 1 AF6 4 ALA A 105 TRP C 326 GOL C 505 HOH C 622 CRYST1 61.419 102.174 145.791 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016282 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006859 0.00000