HEADER TRANSCRIPTION/DNA 08-AUG-15 5D4R TITLE CRYSTAL STRUCTURE OF ARAR(DBD) IN COMPLEX WITH OPERATOR ORE1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARABINOSE METABOLISM TRANSCRIPTIONAL REPRESSOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-68; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*TP*AP*TP*AP*AP*TP*TP*AP*GP*TP*AP*CP*GP*TP*AP*CP*AP*AP*AP*TP*A)- COMPND 9 3'); COMPND 10 CHAIN: T; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*AP*TP*AP*TP*TP*TP*GP*TP*AP*CP*GP*TP*AP*CP*TP*AP*AP*TP*TP*AP*T)- COMPND 15 3'); COMPND 16 CHAIN: U; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: ARAR, ARAC, YVBS, BSU33970; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDJN1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS ARAR, TRANSCRIPTION FACTOR, WINGED-HELIX-TURN-HELIX, DNA COMPLEX, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.JAIN,N.NARAYANAN,D.T.NAIR REVDAT 4 08-NOV-23 5D4R 1 REMARK REVDAT 3 27-SEP-23 5D4R 1 REMARK REVDAT 2 27-JAN-16 5D4R 1 JRNL REMARK REVDAT 1 04-NOV-15 5D4R 0 JRNL AUTH D.JAIN,N.NARAYANAN,D.T.NAIR JRNL TITL PLASTICITY IN REPRESSOR-DNA INTERACTIONS NEUTRALIZES LOSS OF JRNL TITL 2 SYMMETRY IN BIPARTITE OPERATORS. JRNL REF J.BIOL.CHEM. V. 291 1235 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26511320 JRNL DOI 10.1074/JBC.M115.689695 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 21087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0000 - 4.1384 1.00 2605 133 0.1767 0.1962 REMARK 3 2 4.1384 - 3.2855 0.99 2506 144 0.1682 0.2227 REMARK 3 3 3.2855 - 2.8703 0.99 2527 116 0.2190 0.2811 REMARK 3 4 2.8703 - 2.6080 1.00 2478 140 0.2192 0.2855 REMARK 3 5 2.6080 - 2.4211 1.00 2525 129 0.2179 0.2985 REMARK 3 6 2.4211 - 2.2784 1.00 2497 132 0.2154 0.2676 REMARK 3 7 2.2784 - 2.1643 1.00 2485 144 0.2163 0.2691 REMARK 3 8 2.1643 - 2.0701 0.96 2403 123 0.2451 0.3270 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2185 REMARK 3 ANGLE : 1.226 3132 REMARK 3 CHIRALITY : 0.045 348 REMARK 3 PLANARITY : 0.006 258 REMARK 3 DIHEDRAL : 24.103 872 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 13.8212 30.6019 0.9600 REMARK 3 T TENSOR REMARK 3 T11: 0.2180 T22: 0.1434 REMARK 3 T33: 0.2425 T12: 0.0409 REMARK 3 T13: 0.0098 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 4.2632 L22: 3.2687 REMARK 3 L33: 3.8193 L12: -0.1765 REMARK 3 L13: 0.4652 L23: -0.0757 REMARK 3 S TENSOR REMARK 3 S11: 0.0203 S12: 0.1655 S13: 0.2843 REMARK 3 S21: 0.0319 S22: -0.1089 S23: 0.1883 REMARK 3 S31: -0.2358 S32: -0.1216 S33: 0.0874 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN T REMARK 3 ORIGIN FOR THE GROUP (A): 18.6635 18.5368 14.0415 REMARK 3 T TENSOR REMARK 3 T11: 0.1764 T22: 0.2275 REMARK 3 T33: 0.2650 T12: -0.0128 REMARK 3 T13: -0.0106 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 0.6775 L22: 1.8689 REMARK 3 L33: 3.4898 L12: -0.0267 REMARK 3 L13: -0.5115 L23: -0.2165 REMARK 3 S TENSOR REMARK 3 S11: 0.1640 S12: -0.1913 S13: 0.1812 REMARK 3 S21: 0.1154 S22: 0.1680 S23: -0.0316 REMARK 3 S31: 0.0939 S32: 0.3937 S33: -0.3152 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 8.1869 7.5261 10.7226 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.1429 REMARK 3 T33: 0.1604 T12: -0.0134 REMARK 3 T13: -0.0312 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.9220 L22: 3.0195 REMARK 3 L33: 2.4098 L12: -0.3078 REMARK 3 L13: -0.4823 L23: 0.9709 REMARK 3 S TENSOR REMARK 3 S11: 0.0754 S12: 0.0242 S13: -0.1457 REMARK 3 S21: -0.2265 S22: -0.1631 S23: 0.1446 REMARK 3 S31: 0.0075 S32: -0.2289 S33: 0.0951 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D4R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21116 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 36.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4H0E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, PEG 8000, POTASSIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.04050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.21650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.04050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.21650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, T, U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 MET B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 LEU B -12 REMARK 465 GLU B -11 REMARK 465 VAL B -10 REMARK 465 LEU B -9 REMARK 465 PHE B -8 REMARK 465 GLN B -7 REMARK 465 GLY B -6 REMARK 465 PRO B -5 REMARK 465 LEU B -4 REMARK 465 GLY B -3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -13 CG ND1 CD2 CE1 NE2 REMARK 470 SER B -2 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 DA T 2 O HOH T 101 2.12 REMARK 500 O HOH U 143 O HOH U 148 2.17 REMARK 500 OE2 GLU B 30 O HOH B 101 2.17 REMARK 500 O5' DA U 22 O HOH U 101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O5' DT T 1 O3' DA T 21 1556 2.17 REMARK 500 O5' DA U 22 O3' DT U 42 1554 2.17 REMARK 500 O HOH T 151 O HOH U 139 1556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A -3 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 SER A -2 N - CA - CB ANGL. DEV. = -15.9 DEGREES REMARK 500 DT T 3 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC T 16 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT U 27 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC U 31 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A -4 -2.21 -147.44 REMARK 500 SER A -2 73.83 -114.32 REMARK 500 GLU A -1 67.42 38.71 REMARK 500 PHE A 0 137.30 -37.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A -1 PHE A 0 -148.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 152 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 153 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH U 154 DISTANCE = 6.56 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EGY RELATED DB: PDB REMARK 900 RELATED ID: 4EGZ RELATED DB: PDB REMARK 900 RELATED ID: 4H0E RELATED DB: PDB REMARK 900 RELATED ID: 5D4S RELATED DB: PDB DBREF 5D4R A 1 68 UNP P96711 ARAR_BACSU 1 68 DBREF 5D4R B 1 68 UNP P96711 ARAR_BACSU 1 68 DBREF 5D4R T 1 21 PDB 5D4R 5D4R 1 21 DBREF 5D4R U 22 42 PDB 5D4R 5D4R 22 42 SEQADV 5D4R MET A -19 UNP P96711 EXPRESSION TAG SEQADV 5D4R HIS A -18 UNP P96711 EXPRESSION TAG SEQADV 5D4R HIS A -17 UNP P96711 EXPRESSION TAG SEQADV 5D4R HIS A -16 UNP P96711 EXPRESSION TAG SEQADV 5D4R HIS A -15 UNP P96711 EXPRESSION TAG SEQADV 5D4R HIS A -14 UNP P96711 EXPRESSION TAG SEQADV 5D4R HIS A -13 UNP P96711 EXPRESSION TAG SEQADV 5D4R LEU A -12 UNP P96711 EXPRESSION TAG SEQADV 5D4R GLU A -11 UNP P96711 EXPRESSION TAG SEQADV 5D4R VAL A -10 UNP P96711 EXPRESSION TAG SEQADV 5D4R LEU A -9 UNP P96711 EXPRESSION TAG SEQADV 5D4R PHE A -8 UNP P96711 EXPRESSION TAG SEQADV 5D4R GLN A -7 UNP P96711 EXPRESSION TAG SEQADV 5D4R GLY A -6 UNP P96711 EXPRESSION TAG SEQADV 5D4R PRO A -5 UNP P96711 EXPRESSION TAG SEQADV 5D4R LEU A -4 UNP P96711 EXPRESSION TAG SEQADV 5D4R GLY A -3 UNP P96711 EXPRESSION TAG SEQADV 5D4R SER A -2 UNP P96711 EXPRESSION TAG SEQADV 5D4R GLU A -1 UNP P96711 EXPRESSION TAG SEQADV 5D4R PHE A 0 UNP P96711 EXPRESSION TAG SEQADV 5D4R MET B -19 UNP P96711 EXPRESSION TAG SEQADV 5D4R HIS B -18 UNP P96711 EXPRESSION TAG SEQADV 5D4R HIS B -17 UNP P96711 EXPRESSION TAG SEQADV 5D4R HIS B -16 UNP P96711 EXPRESSION TAG SEQADV 5D4R HIS B -15 UNP P96711 EXPRESSION TAG SEQADV 5D4R HIS B -14 UNP P96711 EXPRESSION TAG SEQADV 5D4R HIS B -13 UNP P96711 EXPRESSION TAG SEQADV 5D4R LEU B -12 UNP P96711 EXPRESSION TAG SEQADV 5D4R GLU B -11 UNP P96711 EXPRESSION TAG SEQADV 5D4R VAL B -10 UNP P96711 EXPRESSION TAG SEQADV 5D4R LEU B -9 UNP P96711 EXPRESSION TAG SEQADV 5D4R PHE B -8 UNP P96711 EXPRESSION TAG SEQADV 5D4R GLN B -7 UNP P96711 EXPRESSION TAG SEQADV 5D4R GLY B -6 UNP P96711 EXPRESSION TAG SEQADV 5D4R PRO B -5 UNP P96711 EXPRESSION TAG SEQADV 5D4R LEU B -4 UNP P96711 EXPRESSION TAG SEQADV 5D4R GLY B -3 UNP P96711 EXPRESSION TAG SEQADV 5D4R SER B -2 UNP P96711 EXPRESSION TAG SEQADV 5D4R GLU B -1 UNP P96711 EXPRESSION TAG SEQADV 5D4R PHE B 0 UNP P96711 EXPRESSION TAG SEQRES 1 A 88 MET HIS HIS HIS HIS HIS HIS LEU GLU VAL LEU PHE GLN SEQRES 2 A 88 GLY PRO LEU GLY SER GLU PHE MET LEU PRO LYS TYR ALA SEQRES 3 A 88 GLN VAL LYS GLU GLU ILE SER SER TRP ILE ASN GLN GLY SEQRES 4 A 88 LYS ILE LEU PRO ASP GLN LYS ILE PRO THR GLU ASN GLU SEQRES 5 A 88 LEU MET GLN GLN PHE GLY VAL SER ARG HIS THR ILE ARG SEQRES 6 A 88 LYS ALA ILE GLY ASP LEU VAL SER GLN GLY LEU LEU TYR SEQRES 7 A 88 SER VAL GLN GLY GLY GLY THR PHE VAL ALA SEQRES 1 B 88 MET HIS HIS HIS HIS HIS HIS LEU GLU VAL LEU PHE GLN SEQRES 2 B 88 GLY PRO LEU GLY SER GLU PHE MET LEU PRO LYS TYR ALA SEQRES 3 B 88 GLN VAL LYS GLU GLU ILE SER SER TRP ILE ASN GLN GLY SEQRES 4 B 88 LYS ILE LEU PRO ASP GLN LYS ILE PRO THR GLU ASN GLU SEQRES 5 B 88 LEU MET GLN GLN PHE GLY VAL SER ARG HIS THR ILE ARG SEQRES 6 B 88 LYS ALA ILE GLY ASP LEU VAL SER GLN GLY LEU LEU TYR SEQRES 7 B 88 SER VAL GLN GLY GLY GLY THR PHE VAL ALA SEQRES 1 T 21 DT DA DT DA DA DT DT DA DG DT DA DC DG SEQRES 2 T 21 DT DA DC DA DA DA DT DA SEQRES 1 U 21 DA DT DA DT DT DT DG DT DA DC DG DT DA SEQRES 2 U 21 DC DT DA DA DT DT DA DT FORMUL 5 HOH *213(H2 O) HELIX 1 AA1 PRO A 3 GLN A 18 1 16 HELIX 2 AA2 THR A 29 GLY A 38 1 10 HELIX 3 AA3 SER A 40 GLN A 54 1 15 HELIX 4 AA4 PRO B 3 GLN B 18 1 16 HELIX 5 AA5 THR B 29 GLY B 38 1 10 HELIX 6 AA6 SER B 40 GLN B 54 1 15 SHEET 1 AA1 2 LEU A 57 VAL A 60 0 SHEET 2 AA1 2 GLY A 64 VAL A 67 -1 O PHE A 66 N TYR A 58 SHEET 1 AA2 2 LEU B 57 VAL B 60 0 SHEET 2 AA2 2 GLY B 64 VAL B 67 -1 O PHE B 66 N TYR B 58 CRYST1 134.081 42.433 67.232 90.00 114.82 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007458 0.000000 0.003450 0.00000 SCALE2 0.000000 0.023567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016388 0.00000