HEADER HYDROLASE 12-AUG-15 5D6F TITLE STRUCTURE OF HUMAN METHIONINE AMINOPEPTIDASE-2 COMPLEXED WITH TITLE 2 SPIROEPOXYTRIAZOLE INHIBITOR (+)-31B COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METAP 2,INITIATION FACTOR 2-ASSOCIATED 67 KDA GLYCOPROTEIN, COMPND 5 P67EIF2,PEPTIDASE M; COMPND 6 EC: 3.4.11.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METAP2, MNPEP, P67EIF2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1-HM KEYWDS METAP2, METHIONINE AMINOPEPTIDASE-2, INHIBITOR, SPIROEPOXYTRIAZOLE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.JANOWSKI,A.K.MILLER,D.NIESSING REVDAT 5 10-JAN-24 5D6F 1 REMARK REVDAT 4 20-NOV-19 5D6F 1 LINK REVDAT 3 27-APR-16 5D6F 1 JRNL REVDAT 2 27-JAN-16 5D6F 1 JRNL REVDAT 1 13-JAN-16 5D6F 0 JRNL AUTH M.MORGEN,C.JOST,M.MALZ,R.JANOWSKI,D.NIESSING,C.D.KLEIN, JRNL AUTH 2 N.GUNKEL,A.K.MILLER JRNL TITL SPIROEPOXYTRIAZOLES ARE FUMAGILLIN-LIKE IRREVERSIBLE JRNL TITL 2 INHIBITORS OF METAP2 WITH POTENT CELLULAR ACTIVITY. JRNL REF ACS CHEM.BIOL. V. 11 1001 2016 JRNL REFN ESSN 1554-8937 JRNL PMID 26686773 JRNL DOI 10.1021/ACSCHEMBIO.5B00755 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 62177 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3330 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4555 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 253 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2894 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 504 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.633 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3087 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2940 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4198 ; 2.190 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6802 ; 1.025 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 393 ; 6.253 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;32.899 ;24.468 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 540 ;13.486 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.578 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3474 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 674 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1504 ; 1.717 ; 1.650 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1500 ; 1.696 ; 1.647 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1878 ; 2.446 ; 2.461 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1879 ; 2.445 ; 2.461 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1582 ; 2.733 ; 1.946 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1582 ; 2.725 ; 1.946 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2307 ; 3.937 ; 2.815 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4002 ; 7.246 ;16.085 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4003 ; 7.246 ;16.089 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5D6F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000211847. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97895 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65507 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.370 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.75000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CLS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA CITRATE, TERT-BUTANOL, PH 5.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.67500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.67500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.05500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.75000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.05500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.75000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.67500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.05500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.75000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.67500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.05500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.75000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C TBU A 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 941 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1019 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1047 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 108 REMARK 465 PRO A 109 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 151 O HOH A 603 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 150 -17.61 -45.97 REMARK 500 THR A 151 -34.30 -138.38 REMARK 500 ASN A 211 79.68 -152.32 REMARK 500 CYS A 223 37.43 -145.14 REMARK 500 ASN A 226 -116.26 65.15 REMARK 500 MET A 378 172.01 75.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1103 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1104 DISTANCE = 6.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 502 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 251 OD1 REMARK 620 2 ASP A 251 OD2 59.8 REMARK 620 3 ASP A 262 OD1 93.8 153.6 REMARK 620 4 GLU A 459 OE1 98.8 105.0 75.9 REMARK 620 5 HOH A 828 O 118.9 90.8 104.6 141.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 57R A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TBU A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TBU A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 DBREF 5D6F A 108 478 UNP P50579 MAP2_HUMAN 108 478 SEQRES 1 A 371 GLY PRO LYS VAL GLN THR ASP PRO PRO SER VAL PRO ILE SEQRES 2 A 371 CYS ASP LEU TYR PRO ASN GLY VAL PHE PRO LYS GLY GLN SEQRES 3 A 371 GLU CYS GLU TYR PRO PRO THR GLN ASP GLY ARG THR ALA SEQRES 4 A 371 ALA TRP ARG THR THR SER GLU GLU LYS LYS ALA LEU ASP SEQRES 5 A 371 GLN ALA SER GLU GLU ILE TRP ASN ASP PHE ARG GLU ALA SEQRES 6 A 371 ALA GLU ALA HIS ARG GLN VAL ARG LYS TYR VAL MET SER SEQRES 7 A 371 TRP ILE LYS PRO GLY MET THR MET ILE GLU ILE CYS GLU SEQRES 8 A 371 LYS LEU GLU ASP CYS SER ARG LYS LEU ILE LYS GLU ASN SEQRES 9 A 371 GLY LEU ASN ALA GLY LEU ALA PHE PRO THR GLY CYS SER SEQRES 10 A 371 LEU ASN ASN CYS ALA ALA HIS TYR THR PRO ASN ALA GLY SEQRES 11 A 371 ASP THR THR VAL LEU GLN TYR ASP ASP ILE CYS LYS ILE SEQRES 12 A 371 ASP PHE GLY THR HIS ILE SER GLY ARG ILE ILE ASP CYS SEQRES 13 A 371 ALA PHE THR VAL THR PHE ASN PRO LYS TYR ASP THR LEU SEQRES 14 A 371 LEU LYS ALA VAL LYS ASP ALA THR ASN THR GLY ILE LYS SEQRES 15 A 371 CYS ALA GLY ILE ASP VAL ARG LEU CYS ASP VAL GLY GLU SEQRES 16 A 371 ALA ILE GLN GLU VAL MET GLU SER TYR GLU VAL GLU ILE SEQRES 17 A 371 ASP GLY LYS THR TYR GLN VAL LYS PRO ILE ARG ASN LEU SEQRES 18 A 371 ASN GLY HIS SER ILE GLY GLN TYR ARG ILE HIS ALA GLY SEQRES 19 A 371 LYS THR VAL PRO ILE VAL LYS GLY GLY GLU ALA THR ARG SEQRES 20 A 371 MET GLU GLU GLY GLU VAL TYR ALA ILE GLU THR PHE GLY SEQRES 21 A 371 SER THR GLY LYS GLY VAL VAL HIS ASP ASP MET GLU CYS SEQRES 22 A 371 SER HIS TYR MET LYS ASN PHE ASP VAL GLY HIS VAL PRO SEQRES 23 A 371 ILE ARG LEU PRO ARG THR LYS HIS LEU LEU ASN VAL ILE SEQRES 24 A 371 ASN GLU ASN PHE GLY THR LEU ALA PHE CYS ARG ARG TRP SEQRES 25 A 371 LEU ASP ARG LEU GLY GLU SER LYS TYR LEU MET ALA LEU SEQRES 26 A 371 LYS ASN LEU CYS ASP LEU GLY ILE VAL ASP PRO TYR PRO SEQRES 27 A 371 PRO LEU CYS ASP ILE LYS GLY SER TYR THR ALA GLN PHE SEQRES 28 A 371 GLU HIS THR ILE LEU LEU ARG PRO THR CYS LYS GLU VAL SEQRES 29 A 371 VAL SER ARG GLY ASP ASP TYR HET 57R A 501 27 HET CO A 502 1 HET TBU A 503 10 HET TBU A 504 5 HET EDO A 505 4 HET EDO A 506 4 HETNAM 57R (4S,7R)-7-HYDROXY-1-(4-METHOXYBENZYL)-7-METHYL-4,5,6,7- HETNAM 2 57R TETRAHYDRO-1H-BENZOTRIAZOL-4-YL PROPAN-2-YLCARBAMATE HETNAM CO COBALT (II) ION HETNAM TBU TERTIARY-BUTYL ALCOHOL HETNAM EDO 1,2-ETHANEDIOL HETSYN TBU 2-METHYL-2-PROPANOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 57R C19 H26 N4 O4 FORMUL 3 CO CO 2+ FORMUL 4 TBU 2(C4 H10 O) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 HOH *504(H2 O) HELIX 1 AA1 PRO A 119 TYR A 124 1 6 HELIX 2 AA2 SER A 152 SER A 162 1 11 HELIX 3 AA3 SER A 162 ILE A 187 1 26 HELIX 4 AA4 THR A 192 LYS A 209 1 18 HELIX 5 AA5 ASN A 211 LEU A 213 5 3 HELIX 6 AA6 ASN A 270 LYS A 272 5 3 HELIX 7 AA7 TYR A 273 ALA A 291 1 19 HELIX 8 AA8 ARG A 296 SER A 310 1 15 HELIX 9 AA9 LEU A 396 PHE A 410 1 15 HELIX 10 AB1 ARG A 417 ARG A 422 1 6 HELIX 11 AB2 TYR A 428 LEU A 438 1 11 SHEET 1 AA1 5 GLN A 133 CYS A 135 0 SHEET 2 AA1 5 LYS A 469 VAL A 471 -1 O LYS A 469 N CYS A 135 SHEET 3 AA1 5 THR A 455 LEU A 464 -1 N LEU A 463 O GLU A 470 SHEET 4 AA1 5 VAL A 360 SER A 368 -1 N ILE A 363 O HIS A 460 SHEET 5 AA1 5 LYS A 323 PRO A 324 -1 N LYS A 323 O SER A 368 SHEET 1 AA2 6 GLN A 133 CYS A 135 0 SHEET 2 AA2 6 LYS A 469 VAL A 471 -1 O LYS A 469 N CYS A 135 SHEET 3 AA2 6 THR A 455 LEU A 464 -1 N LEU A 463 O GLU A 470 SHEET 4 AA2 6 VAL A 360 SER A 368 -1 N ILE A 363 O HIS A 460 SHEET 5 AA2 6 ASN A 329 ILE A 333 -1 N HIS A 331 O ALA A 362 SHEET 6 AA2 6 THR A 343 PRO A 345 -1 O VAL A 344 N GLY A 330 SHEET 1 AA3 3 ALA A 215 LEU A 225 0 SHEET 2 AA3 3 CYS A 248 ILE A 256 -1 O ASP A 251 N GLY A 222 SHEET 3 AA3 3 ARG A 259 VAL A 267 -1 O VAL A 267 N CYS A 248 SHEET 1 AA4 3 CYS A 228 ALA A 230 0 SHEET 2 AA4 3 LEU A 447 CYS A 448 -1 O LEU A 447 N ALA A 230 SHEET 3 AA4 3 HIS A 375 ASP A 376 -1 N HIS A 375 O CYS A 448 SHEET 1 AA5 2 GLU A 312 ILE A 315 0 SHEET 2 AA5 2 LYS A 318 GLN A 321 -1 O TYR A 320 N VAL A 313 SHEET 1 AA6 3 PHE A 415 CYS A 416 0 SHEET 2 AA6 3 HIS A 382 LYS A 385 -1 N TYR A 383 O PHE A 415 SHEET 3 AA6 3 VAL A 441 TYR A 444 -1 O TYR A 444 N HIS A 382 SSBOND 1 CYS A 228 CYS A 448 1555 1555 2.17 LINK NE2 HIS A 231 C9 57R A 501 1555 1555 1.42 LINK OD1 ASP A 251 CO CO A 502 1555 1555 2.18 LINK OD2 ASP A 251 CO CO A 502 1555 1555 2.11 LINK OD1 ASP A 262 CO CO A 502 1555 1555 1.84 LINK OE1 GLU A 459 CO CO A 502 1555 1555 2.40 LINK CO CO A 502 O HOH A 828 1555 1555 1.85 CISPEP 1 ASP A 114 PRO A 115 0 -1.38 SITE 1 AC1 13 HIS A 231 ASN A 327 LEU A 328 ASN A 329 SITE 2 AC1 13 ILE A 338 HIS A 339 GLU A 364 ALA A 414 SITE 3 AC1 13 TYR A 444 HOH A 607 HOH A 736 HOH A 828 SITE 4 AC1 13 HOH A 835 SITE 1 AC2 4 ASP A 251 ASP A 262 GLU A 459 HOH A 828 SITE 1 AC3 5 THR A 268 PHE A 269 ASN A 270 ASP A 274 SITE 2 AC3 5 HOH A 668 SITE 1 AC4 3 PRO A 189 TYR A 244 HOH A 702 SITE 1 AC5 5 TYR A 336 PHE A 410 GLY A 411 THR A 412 SITE 2 AC5 5 HOH A 710 SITE 1 AC6 6 GLY A 190 THR A 192 GLN A 243 HOH A 604 SITE 2 AC6 6 HOH A 637 HOH A 730 CRYST1 90.110 99.500 101.350 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011098 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009867 0.00000