HEADER IMMUNE SYSTEM 14-AUG-15 5D7S TITLE CRYSTAL STRUCTURE OF MOR04357, A NEUTRALIZING ANTI-HUMAN GM-CSF TITLE 2 ANTIBODY FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNGLOBULIN G1 FAB FRAGMENT, LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IMMUNGLOBULIN G1 FAB FRAGMENT, HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GM-CSF, AFFINITY MATURATION, PHAGE DISPLAY, CYTOKINE, ANTIBODY, KEYWDS 2 PROTEROS BIOSTRUCTURES GMBH, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.EYLENSTEIN,D.WEINFURTNER,S.STEIDL,J.BOETTCHER,M.AUGUSTIN REVDAT 3 13-JAN-16 5D7S 1 JRNL REVDAT 2 28-OCT-15 5D7S 1 JRNL REVDAT 1 14-OCT-15 5D7S 0 JRNL AUTH R.EYLENSTEIN,D.WEINFURTNER,S.HARTLE,R.STROHNER,J.BOTTCHER, JRNL AUTH 2 M.AUGUSTIN,R.OSTENDORP,S.STEIDL JRNL TITL MOLECULAR BASIS OF IN VITRO AFFINITY MATURATION AND JRNL TITL 2 FUNCTIONAL EVOLUTION OF A NEUTRALIZING ANTI-HUMAN GM-CSF JRNL TITL 3 ANTIBODY. JRNL REF MABS V. 8 176 2016 JRNL REFN ESSN 1942-0870 JRNL PMID 26406987 JRNL DOI 10.1080/19420862.2015.1099774 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 34906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2503 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3155 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 199 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.92000 REMARK 3 B22 (A**2) : 0.98000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.638 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3216 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2790 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4397 ; 1.303 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6525 ; 0.736 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 425 ; 7.084 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;33.920 ;24.505 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 466 ;12.339 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.791 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3632 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 623 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 511 ; 0.186 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2624 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1531 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1750 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 182 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.113 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2672 ; 2.370 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 868 ; 0.678 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3396 ; 2.923 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1352 ; 4.257 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1001 ; 5.295 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 122 REMARK 3 ORIGIN FOR THE GROUP (A): 16.860 -6.104 5.443 REMARK 3 T TENSOR REMARK 3 T11: 0.2289 T22: 0.0146 REMARK 3 T33: 0.3091 T12: 0.0523 REMARK 3 T13: 0.1153 T23: 0.1616 REMARK 3 L TENSOR REMARK 3 L11: 2.6517 L22: 1.3982 REMARK 3 L33: 4.9864 L12: 0.3921 REMARK 3 L13: -2.3942 L23: -1.8319 REMARK 3 S TENSOR REMARK 3 S11: -0.4377 S12: -0.3460 S13: -1.0019 REMARK 3 S21: -0.2649 S22: 0.0379 S23: 0.0117 REMARK 3 S31: 0.8182 S32: 0.2265 S33: 0.3999 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 123 H 218 REMARK 3 ORIGIN FOR THE GROUP (A): -5.813 -2.023 37.758 REMARK 3 T TENSOR REMARK 3 T11: -0.1486 T22: -0.1321 REMARK 3 T33: -0.1419 T12: 0.0082 REMARK 3 T13: -0.0296 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.8818 L22: 3.8623 REMARK 3 L33: 1.5608 L12: 0.0270 REMARK 3 L13: -0.5399 L23: 0.6902 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: -0.0689 S13: 0.0430 REMARK 3 S21: -0.0357 S22: 0.0020 S23: 0.1100 REMARK 3 S31: 0.0519 S32: -0.0838 S33: 0.0113 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 3 L 112 REMARK 3 ORIGIN FOR THE GROUP (A): 14.179 17.548 10.211 REMARK 3 T TENSOR REMARK 3 T11: -0.0167 T22: 0.0067 REMARK 3 T33: -0.0871 T12: -0.0285 REMARK 3 T13: -0.0234 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 2.6373 L22: 1.7840 REMARK 3 L33: 3.4215 L12: -1.4732 REMARK 3 L13: -2.3797 L23: 1.0884 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: -0.0341 S13: 0.1031 REMARK 3 S21: -0.1888 S22: -0.0134 S23: -0.1856 REMARK 3 S31: -0.1822 S32: 0.3698 S33: -0.0223 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 113 L 207 REMARK 3 ORIGIN FOR THE GROUP (A): 7.986 6.552 37.071 REMARK 3 T TENSOR REMARK 3 T11: -0.1684 T22: -0.1151 REMARK 3 T33: -0.1457 T12: 0.0150 REMARK 3 T13: 0.0176 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 1.2151 L22: 3.7007 REMARK 3 L33: 2.3676 L12: 0.3106 REMARK 3 L13: 0.0779 L23: -1.0457 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: -0.0882 S13: -0.1081 REMARK 3 S21: 0.0157 S22: -0.1003 S23: -0.2377 REMARK 3 S31: 0.0138 S32: 0.0910 S33: 0.0892 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5D7S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212660. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36714 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 78.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26 % PEG3350, 0.2 M NACL AND 0.1 M REMARK 280 TRIS, PH 8.25, 10.5 MG/ML PROTEIN, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.91150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.32850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.46100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.32850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.91150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.46100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP L 1 REMARK 465 ILE L 2 REMARK 465 GLU L 208 REMARK 465 ALA L 209 REMARK 465 SER H 219 REMARK 465 GLU H 220 REMARK 465 PHE H 221 REMARK 465 ASP H 222 REMARK 465 TYR H 223 REMARK 465 LYS H 224 REMARK 465 ASP H 225 REMARK 465 ASP H 226 REMARK 465 ASP H 227 REMARK 465 ASP H 228 REMARK 465 LYS H 229 REMARK 465 GLY H 230 REMARK 465 ALA H 231 REMARK 465 PRO H 232 REMARK 465 HIS H 233 REMARK 465 HIS H 234 REMARK 465 HIS H 235 REMARK 465 HIS H 236 REMARK 465 HIS H 237 REMARK 465 HIS H 238 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS L 49 CG CD CE NZ REMARK 480 LYS L 50 CG CD CE NZ REMARK 480 ARG L 51 CZ NH1 NH2 REMARK 480 GLU L 78 CG CD OE1 OE2 REMARK 480 LYS L 127 CD CE NZ REMARK 480 LYS L 164 CD CE NZ REMARK 480 ARG L 187 CD NE CZ NH1 NH2 REMARK 480 GLN H 13 CB CG CD OE1 NE2 REMARK 480 LYS H 54 CG CD CE NZ REMARK 480 LYS H 67 CG CD CE NZ REMARK 480 LYS H 78 CD CE NZ REMARK 480 LYS H 218 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 302 O HOH H 376 3545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG L 51 124.74 -39.51 REMARK 500 SER L 53 -141.48 -143.43 REMARK 500 ASP L 149 -116.66 53.44 REMARK 500 ALA H 118 43.79 -90.16 REMARK 500 ASP H 148 63.01 61.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BUD L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BUD L 302 DBREF 5D7S L 1 209 PDB 5D7S 5D7S 1 209 DBREF 5D7S H 1 238 PDB 5D7S 5D7S 1 238 SEQRES 1 L 209 ASP ILE GLU LEU THR GLN PRO PRO SER VAL SER VAL ALA SEQRES 2 L 209 PRO GLY GLN THR ALA ARG ILE SER CYS SER GLY ASP SER SEQRES 3 L 209 ILE GLY LYS LYS TYR ALA TYR TRP TYR GLN GLN LYS PRO SEQRES 4 L 209 GLY GLN ALA PRO VAL LEU VAL ILE TYR LYS LYS ARG PRO SEQRES 5 L 209 SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SER GLY SEQRES 6 L 209 ASN THR ALA THR LEU THR ILE SER GLY THR GLN ALA GLU SEQRES 7 L 209 ASP GLU ALA ASP TYR TYR CYS SER ALA TRP GLY ASP LYS SEQRES 8 L 209 GLY MET VAL PHE GLY GLY GLY THR LYS LEU THR VAL LEU SEQRES 9 L 209 GLY GLN PRO LYS ALA ALA PRO SER VAL THR LEU PHE PRO SEQRES 10 L 209 PRO SER SER GLU GLU LEU GLN ALA ASN LYS ALA THR LEU SEQRES 11 L 209 VAL CYS LEU ILE SER ASP PHE TYR PRO GLY ALA VAL THR SEQRES 12 L 209 VAL ALA TRP LYS ALA ASP SER SER PRO VAL LYS ALA GLY SEQRES 13 L 209 VAL GLU THR THR THR PRO SER LYS GLN SER ASN ASN LYS SEQRES 14 L 209 TYR ALA ALA SER SER TYR LEU SER LEU THR PRO GLU GLN SEQRES 15 L 209 TRP LYS SER HIS ARG SER TYR SER CYS GLN VAL THR HIS SEQRES 16 L 209 GLU GLY SER THR VAL GLU LYS THR VAL ALA PRO THR GLU SEQRES 17 L 209 ALA SEQRES 1 H 238 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 238 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 238 PHE THR PHE SER SER TYR TRP MET ASN TRP VAL ARG GLN SEQRES 4 H 238 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER GLY ILE GLU SEQRES 5 H 238 ASN LYS TYR ALA GLY GLY ALA THR TYR TYR ALA ALA SER SEQRES 6 H 238 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS SEQRES 7 H 238 ASN THR LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU SEQRES 8 H 238 ASP THR ALA VAL TYR TYR CYS ALA ARG GLY PHE GLY THR SEQRES 9 H 238 ASP PHE TRP GLY GLN GLY THR LEU VAL THR VAL SER SER SEQRES 10 H 238 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 H 238 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 H 238 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 H 238 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 H 238 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 H 238 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 H 238 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 H 238 THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER GLU PHE SEQRES 18 H 238 ASP TYR LYS ASP ASP ASP ASP LYS GLY ALA PRO HIS HIS SEQRES 19 H 238 HIS HIS HIS HIS HET BUD L 301 6 HET BUD L 302 6 HETNAM BUD (2S,3S)-BUTANE-2,3-DIOL FORMUL 3 BUD 2(C4 H10 O2) FORMUL 5 HOH *199(H2 O) HELIX 1 AA1 SER L 26 LYS L 30 5 5 HELIX 2 AA2 GLN L 76 GLU L 80 5 5 HELIX 3 AA3 SER L 119 ALA L 125 1 7 HELIX 4 AA4 THR L 179 SER L 185 1 7 HELIX 5 AA5 THR H 28 TYR H 32 5 5 HELIX 6 AA6 ASN H 53 GLY H 57 5 5 HELIX 7 AA7 ARG H 89 THR H 93 5 5 HELIX 8 AA8 SER H 160 ALA H 162 5 3 HELIX 9 AA9 SER H 191 LEU H 193 5 3 HELIX 10 AB1 LYS H 205 ASN H 208 5 4 SHEET 1 AA1 5 SER L 9 VAL L 12 0 SHEET 2 AA1 5 THR L 99 VAL L 103 1 O LYS L 100 N VAL L 10 SHEET 3 AA1 5 ALA L 81 TRP L 88 -1 N ALA L 81 O LEU L 101 SHEET 4 AA1 5 TYR L 33 GLN L 37 -1 N GLN L 37 O ASP L 82 SHEET 5 AA1 5 VAL L 44 LEU L 45 -1 O VAL L 44 N GLN L 36 SHEET 1 AA2 4 SER L 9 VAL L 12 0 SHEET 2 AA2 4 THR L 99 VAL L 103 1 O LYS L 100 N VAL L 10 SHEET 3 AA2 4 ALA L 81 TRP L 88 -1 N ALA L 81 O LEU L 101 SHEET 4 AA2 4 MET L 93 PHE L 95 -1 O VAL L 94 N ALA L 87 SHEET 1 AA3 3 ALA L 18 SER L 23 0 SHEET 2 AA3 3 THR L 67 ILE L 72 -1 O ALA L 68 N CYS L 22 SHEET 3 AA3 3 PHE L 59 SER L 64 -1 N SER L 60 O THR L 71 SHEET 1 AA4 4 SER L 112 PHE L 116 0 SHEET 2 AA4 4 ALA L 128 PHE L 137 -1 O SER L 135 N SER L 112 SHEET 3 AA4 4 TYR L 170 LEU L 178 -1 O ALA L 172 N ILE L 134 SHEET 4 AA4 4 VAL L 157 THR L 159 -1 N GLU L 158 O TYR L 175 SHEET 1 AA5 4 SER L 112 PHE L 116 0 SHEET 2 AA5 4 ALA L 128 PHE L 137 -1 O SER L 135 N SER L 112 SHEET 3 AA5 4 TYR L 170 LEU L 178 -1 O ALA L 172 N ILE L 134 SHEET 4 AA5 4 SER L 163 LYS L 164 -1 N SER L 163 O ALA L 171 SHEET 1 AA6 4 SER L 151 VAL L 153 0 SHEET 2 AA6 4 THR L 143 ALA L 148 -1 N ALA L 148 O SER L 151 SHEET 3 AA6 4 TYR L 189 HIS L 195 -1 O GLN L 192 N ALA L 145 SHEET 4 AA6 4 SER L 198 VAL L 204 -1 O VAL L 200 N VAL L 193 SHEET 1 AA7 4 GLN H 3 SER H 7 0 SHEET 2 AA7 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA7 4 THR H 80 MET H 85 -1 O MET H 85 N LEU H 18 SHEET 4 AA7 4 PHE H 70 ASP H 75 -1 N SER H 73 O TYR H 82 SHEET 1 AA8 6 LEU H 11 VAL H 12 0 SHEET 2 AA8 6 THR H 111 VAL H 115 1 O THR H 114 N VAL H 12 SHEET 3 AA8 6 ALA H 94 ARG H 100 -1 N TYR H 96 O THR H 111 SHEET 4 AA8 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 97 SHEET 5 AA8 6 LEU H 45 ILE H 51 -1 O SER H 49 N TRP H 36 SHEET 6 AA8 6 THR H 60 TYR H 62 -1 O TYR H 61 N GLY H 50 SHEET 1 AA9 4 SER H 124 SER H 131 0 SHEET 2 AA9 4 THR H 139 TYR H 149 -1 O LYS H 147 N SER H 124 SHEET 3 AA9 4 TYR H 180 PRO H 189 -1 O VAL H 186 N LEU H 142 SHEET 4 AA9 4 VAL H 167 THR H 169 -1 N HIS H 168 O VAL H 185 SHEET 1 AB1 4 SER H 124 SER H 131 0 SHEET 2 AB1 4 THR H 139 TYR H 149 -1 O LYS H 147 N SER H 124 SHEET 3 AB1 4 TYR H 180 PRO H 189 -1 O VAL H 186 N LEU H 142 SHEET 4 AB1 4 VAL H 173 LEU H 174 -1 N VAL H 173 O SER H 181 SHEET 1 AB2 3 THR H 155 TRP H 158 0 SHEET 2 AB2 3 ILE H 199 HIS H 204 -1 O ASN H 201 N SER H 157 SHEET 3 AB2 3 THR H 209 LYS H 214 -1 O VAL H 211 N VAL H 202 SSBOND 1 CYS L 22 CYS L 85 1555 1555 2.05 SSBOND 2 CYS L 132 CYS L 191 1555 1555 2.05 SSBOND 3 CYS H 22 CYS H 98 1555 1555 2.07 SSBOND 4 CYS H 144 CYS H 200 1555 1555 2.04 CISPEP 1 TYR L 138 PRO L 139 0 -6.06 CISPEP 2 PHE H 150 PRO H 151 0 -3.90 CISPEP 3 GLU H 152 PRO H 153 0 -1.09 SITE 1 AC1 6 VAL H 185 SER L 112 VAL L 113 THR L 114 SITE 2 AC1 6 LEU L 133 SER L 135 SITE 1 AC2 6 LYS H 210 LYS L 147 ASP L 149 SER L 150 SITE 2 AC2 6 SER L 188 GLU L 201 CRYST1 41.823 66.922 156.657 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023910 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006383 0.00000