HEADER LYASE 14-AUG-15 5D7Z TITLE CRYSTAL STRUCTURE OF GLYOXALASE I FROM ZEA MAYS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOYLGLUTATHIONE LYASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 26-315; COMPND 5 SYNONYM: GLYOXALASE I; COMPND 6 EC: 4.4.1.5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 GENE: ZM.67052, ZEAMMB73_635823; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.GONZALEZ REVDAT 4 06-MAR-24 5D7Z 1 REMARK LINK REVDAT 3 28-OCT-15 5D7Z 1 JRNL REVDAT 2 14-OCT-15 5D7Z 1 JRNL REVDAT 1 09-SEP-15 5D7Z 0 SPRSDE 09-SEP-15 5D7Z 4RO6 JRNL AUTH G.L.TURRA,R.B.AGOSTINI,C.M.FAUGUEL,D.A.PRESELLO,C.S.ANDREO, JRNL AUTH 2 J.M.GONZALEZ,V.A.CAMPOS-BERMUDEZ JRNL TITL STRUCTURE OF THE NOVEL MONOMERIC GLYOXALASE I FROM ZEA MAYS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 2009 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 26457425 JRNL DOI 10.1107/S1399004715015205 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1843 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2455 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2201 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -2.55000 REMARK 3 B12 (A**2) : 0.39000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.316 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2308 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2155 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3103 ; 2.026 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4963 ; 0.953 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 284 ; 6.939 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;37.437 ;24.190 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 372 ;13.348 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.735 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 334 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2603 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 524 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1128 ; 3.047 ; 2.866 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1129 ; 3.046 ; 2.867 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1410 ; 3.980 ; 4.275 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1410 ; 3.979 ; 4.275 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1178 ; 3.994 ; 5.267 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1178 ; 3.993 ; 5.267 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1692 ; 5.682 ; 4.646 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2556 ; 7.167 ;23.569 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2515 ; 7.130 ;23.363 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1 ;27.626 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5D7Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212808. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12709 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36195 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 38.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M SODIUM FORMATE, 1% PEG 4000, PH REMARK 280 9.7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.35650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 37.35650 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.35650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 GLU A 12 REMARK 465 ALA A 13 REMARK 465 VAL A 14 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 15 CG1 CG2 REMARK 470 ASP A 16 CG OD1 OD2 REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 ASP A 58 CG OD1 OD2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 HIS A 296 CA C O CB CG ND1 CD2 REMARK 470 HIS A 296 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 294 O HOH A 401 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 153 CD GLU A 153 OE1 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 34 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 103 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 164 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 271 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 26 -60.54 -95.52 REMARK 500 LYS A 126 81.83 -1.30 REMARK 500 ALA A 223 -65.78 -101.14 REMARK 500 ALA A 225 -64.30 -95.55 REMARK 500 LEU A 253 -79.96 -100.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE A 308 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 290 NE2 REMARK 620 2 HIS A 290 NE2 0.0 REMARK 620 3 HIS A 295 NE2 94.3 94.3 REMARK 620 4 HIS A 295 NE2 94.3 94.3 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 2PE A 308 O4 REMARK 620 2 2PE A 308 O7 68.2 REMARK 620 3 2PE A 308 O10 93.0 69.4 REMARK 620 4 2PE A 308 O19 86.8 94.8 162.9 REMARK 620 5 2PE A 308 O13 109.5 137.1 67.9 128.1 REMARK 620 6 2PE A 308 O16 89.6 151.8 131.3 65.7 65.5 REMARK 620 7 HOH A 435 O 158.9 93.2 89.5 84.9 90.8 104.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2PE A 308 DBREF 5D7Z A 1 290 UNP B6TPH0 B6TPH0_MAIZE 26 315 SEQADV 5D7Z LEU A 291 UNP B6TPH0 EXPRESSION TAG SEQADV 5D7Z GLU A 292 UNP B6TPH0 EXPRESSION TAG SEQADV 5D7Z HIS A 293 UNP B6TPH0 EXPRESSION TAG SEQADV 5D7Z HIS A 294 UNP B6TPH0 EXPRESSION TAG SEQADV 5D7Z HIS A 295 UNP B6TPH0 EXPRESSION TAG SEQADV 5D7Z HIS A 296 UNP B6TPH0 EXPRESSION TAG SEQADV 5D7Z HIS A 297 UNP B6TPH0 EXPRESSION TAG SEQADV 5D7Z HIS A 298 UNP B6TPH0 EXPRESSION TAG SEQRES 1 A 298 MET ALA THR GLY SER GLU ALA SER LYS ALA ALA GLU ALA SEQRES 2 A 298 VAL VAL ASP TRP HIS LYS HIS ASP SER LYS ARG MET LEU SEQRES 3 A 298 HIS ALA VAL TYR ARG VAL GLY ASP LEU ASP ARG THR ILE SEQRES 4 A 298 LYS TYR TYR THR GLU CYS PHE GLY MET LYS LEU LEU ARG SEQRES 5 A 298 LYS ARG ASP VAL PRO ASP GLU LYS TYR THR ASN ALA PHE SEQRES 6 A 298 LEU GLY PHE GLY PRO GLU ASN THR ASN PHE ALA VAL GLU SEQRES 7 A 298 LEU THR TYR ASN TYR GLY VAL ASP LYS TYR ASP ILE GLY SEQRES 8 A 298 THR GLY PHE GLY HIS PHE ALA ILE ALA ASN ASP ASP VAL SEQRES 9 A 298 TYR LYS LEU ALA GLU ASN ILE LYS SER LYS GLY GLY LYS SEQRES 10 A 298 ILE THR ARG GLU PRO GLY PRO VAL LYS GLY GLY SER THR SEQRES 11 A 298 VAL ILE ALA PHE ALA GLN ASP PRO ASP GLY TYR MET PHE SEQRES 12 A 298 GLU LEU ILE GLN ARG ALA ASP THR PRO GLU PRO LEU CYS SEQRES 13 A 298 GLN VAL MET LEU ARG VAL GLY ASP LEU GLU ARG SER ILE SEQRES 14 A 298 LYS PHE TYR GLU LYS ALA LEU GLY MET LYS LEU LEU ARG SEQRES 15 A 298 LYS LYS ASP VAL PRO ASP TYR LYS TYR THR ILE ALA MET SEQRES 16 A 298 LEU GLY TYR ALA ASP GLU ASP LYS THR THR VAL LEU GLU SEQRES 17 A 298 LEU THR TYR ASN TYR GLY VAL THR GLU TYR SER LYS GLY SEQRES 18 A 298 ASN ALA TYR ALA GLN VAL ALA ILE GLY THR ASN ASP VAL SEQRES 19 A 298 TYR LYS SER ALA GLU ALA VAL ASP LEU ALA THR LYS GLU SEQRES 20 A 298 LEU GLY GLY LYS ILE LEU ARG GLN PRO GLY PRO LEU PRO SEQRES 21 A 298 GLY ILE ASN THR LYS ILE ALA SER PHE VAL ASP PRO ASP SEQRES 22 A 298 GLY TRP LYS VAL VAL LEU VAL ASP ASN THR ASP PHE LEU SEQRES 23 A 298 LYS GLU LEU HIS LEU GLU HIS HIS HIS HIS HIS HIS HET NI A 301 1 HET FMT A 302 3 HET FMT A 303 3 HET FMT A 304 3 HET FMT A 305 3 HET FMT A 306 3 HET NA A 307 1 HET 2PE A 308 25 HETNAM NI NICKEL (II) ION HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION HETNAM 2PE NONAETHYLENE GLYCOL FORMUL 2 NI NI 2+ FORMUL 3 FMT 5(C H2 O2) FORMUL 8 NA NA 1+ FORMUL 9 2PE C18 H38 O10 FORMUL 10 HOH *146(H2 O) HELIX 1 AA1 ASP A 16 ASP A 21 1 6 HELIX 2 AA2 ASP A 34 CYS A 45 1 12 HELIX 3 AA3 PRO A 57 GLU A 59 5 3 HELIX 4 AA4 ASP A 103 LYS A 114 1 12 HELIX 5 AA5 ASP A 164 GLY A 177 1 14 HELIX 6 AA6 PRO A 187 TYR A 189 5 3 HELIX 7 AA7 ASP A 200 THR A 204 5 5 HELIX 8 AA8 ASP A 233 GLY A 249 1 17 HELIX 9 AA9 ASN A 282 HIS A 295 1 14 SHEET 1 AA1 8 LYS A 49 VAL A 56 0 SHEET 2 AA1 8 TYR A 61 GLY A 67 -1 O GLY A 67 N LYS A 49 SHEET 3 AA1 8 ALA A 76 ASN A 82 -1 O LEU A 79 N ALA A 64 SHEET 4 AA1 8 ARG A 24 ARG A 31 1 N ALA A 28 O GLU A 78 SHEET 5 AA1 8 TYR A 224 THR A 231 -1 O GLN A 226 N VAL A 29 SHEET 6 AA1 8 LYS A 276 ASP A 281 1 O VAL A 278 N ILE A 229 SHEET 7 AA1 8 LYS A 265 VAL A 270 -1 N PHE A 269 O VAL A 277 SHEET 8 AA1 8 LYS A 251 ILE A 252 -1 N LYS A 251 O VAL A 270 SHEET 1 AA2 8 LYS A 49 VAL A 56 0 SHEET 2 AA2 8 TYR A 61 GLY A 67 -1 O GLY A 67 N LYS A 49 SHEET 3 AA2 8 ALA A 76 ASN A 82 -1 O LEU A 79 N ALA A 64 SHEET 4 AA2 8 ARG A 24 ARG A 31 1 N ALA A 28 O GLU A 78 SHEET 5 AA2 8 TYR A 224 THR A 231 -1 O GLN A 226 N VAL A 29 SHEET 6 AA2 8 LYS A 276 ASP A 281 1 O VAL A 278 N ILE A 229 SHEET 7 AA2 8 LYS A 265 VAL A 270 -1 N PHE A 269 O VAL A 277 SHEET 8 AA2 8 GLY A 257 PRO A 258 -1 N GLY A 257 O ILE A 266 SHEET 1 AA3 8 LYS A 117 PRO A 124 0 SHEET 2 AA3 8 VAL A 131 GLN A 136 -1 O ILE A 132 N GLY A 123 SHEET 3 AA3 8 MET A 142 GLN A 147 -1 O LEU A 145 N ALA A 133 SHEET 4 AA3 8 PHE A 94 ASN A 101 1 N ILE A 99 O GLU A 144 SHEET 5 AA3 8 LEU A 155 ARG A 161 -1 O MET A 159 N HIS A 96 SHEET 6 AA3 8 VAL A 206 ASN A 212 1 O GLU A 208 N VAL A 158 SHEET 7 AA3 8 TYR A 191 GLY A 197 -1 N THR A 192 O TYR A 211 SHEET 8 AA3 8 LYS A 179 VAL A 186 -1 N LYS A 179 O GLY A 197 LINK NE2 HIS A 290 NI NI A 301 1555 1555 2.14 LINK NE2 HIS A 290 NI NI A 301 1555 3755 2.16 LINK NE2 HIS A 295 NI NI A 301 1555 1555 2.14 LINK NE2 HIS A 295 NI NI A 301 1555 2535 2.20 LINK NA NA A 307 O4 2PE A 308 1555 1555 2.31 LINK NA NA A 307 O7 2PE A 308 1555 1555 2.30 LINK NA NA A 307 O10 2PE A 308 1555 1555 2.29 LINK NA NA A 307 O19 2PE A 308 1555 1555 2.35 LINK NA NA A 307 O13 2PE A 308 1555 1555 2.28 LINK NA NA A 307 O16 2PE A 308 1555 1555 2.30 LINK NA NA A 307 O HOH A 435 1555 1555 2.33 CISPEP 1 GLY A 127 GLY A 128 0 13.04 CISPEP 2 GLY A 128 SER A 129 0 -10.08 SITE 1 AC1 2 HIS A 290 HIS A 295 SITE 1 AC2 3 ARG A 120 VAL A 125 2PE A 308 SITE 1 AC3 5 ARG A 161 THR A 210 ASN A 212 2PE A 308 SITE 2 AC3 5 HOH A 435 SITE 1 AC4 4 ARG A 182 LYS A 184 ILE A 193 HOH A 439 SITE 1 AC5 2 ILE A 146 ARG A 148 SITE 1 AC6 4 TYR A 105 SER A 268 LYS A 276 HOH A 465 SITE 1 AC7 2 2PE A 308 HOH A 435 SITE 1 AC8 5 TYR A 191 FMT A 302 FMT A 303 NA A 307 SITE 2 AC8 5 HOH A 413 CRYST1 90.690 90.690 74.713 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011027 0.006366 0.000000 0.00000 SCALE2 0.000000 0.012732 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013385 0.00000