HEADER BIOSYNTHETIC PROTEIN 15-AUG-15 5D85 TITLE STAPHYLOFERRIN B PRECURSOR BIOSYNTHETIC ENZYME SBNA BOUND TO TITLE 2 AMINOACRYLATE INTERMEDIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE SIDEROPHORE BIOSYNTHESIS PROTEIN SBNA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 426430; SOURCE 4 STRAIN: NEWMAN; SOURCE 5 GENE: SBNA, NWMN_0060; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SIDEROPHORE, IRON, PLP, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.KOBYLARZ,J.C.GRIGG,Y.LIU,M.S.F.LEE,D.E.HEINRICHS,M.E.P.MURPHY REVDAT 5 06-MAR-24 5D85 1 REMARK REVDAT 4 08-JAN-20 5D85 1 REMARK REVDAT 3 06-SEP-17 5D85 1 JRNL REMARK REVDAT 2 24-FEB-16 5D85 1 JRNL REVDAT 1 03-FEB-16 5D85 0 JRNL AUTH M.J.KOBYLARZ,J.C.GRIGG,Y.LIU,M.S.LEE,D.E.HEINRICHS, JRNL AUTH 2 M.E.MURPHY JRNL TITL DECIPHERING THE SUBSTRATE SPECIFICITY OF SBNA, THE ENZYME JRNL TITL 2 CATALYZING THE FIRST STEP IN STAPHYLOFERRIN B BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 55 927 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 26794841 JRNL DOI 10.1021/ACS.BIOCHEM.5B01045 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 25049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0817 - 4.6208 1.00 1799 156 0.1570 0.1906 REMARK 3 2 4.6208 - 3.6687 1.00 1700 147 0.1308 0.1741 REMARK 3 3 3.6687 - 3.2053 1.00 1665 144 0.1601 0.1967 REMARK 3 4 3.2053 - 2.9124 1.00 1684 146 0.1703 0.2036 REMARK 3 5 2.9124 - 2.7037 1.00 1631 143 0.1786 0.2147 REMARK 3 6 2.7037 - 2.5443 1.00 1660 143 0.1784 0.2416 REMARK 3 7 2.5443 - 2.4169 1.00 1638 143 0.1758 0.2009 REMARK 3 8 2.4169 - 2.3117 1.00 1630 141 0.1794 0.2115 REMARK 3 9 2.3117 - 2.2227 1.00 1642 143 0.1887 0.2186 REMARK 3 10 2.2227 - 2.1461 1.00 1631 141 0.1933 0.2807 REMARK 3 11 2.1461 - 2.0790 1.00 1604 139 0.1958 0.2784 REMARK 3 12 2.0790 - 2.0195 1.00 1636 142 0.2067 0.2504 REMARK 3 13 2.0195 - 1.9664 1.00 1629 142 0.2358 0.3310 REMARK 3 14 1.9664 - 1.9200 0.93 1500 130 0.2610 0.3264 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2547 REMARK 3 ANGLE : 1.286 3457 REMARK 3 CHIRALITY : 0.060 388 REMARK 3 PLANARITY : 0.007 444 REMARK 3 DIHEDRAL : 16.181 977 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 9:45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.1651 7.3291 -13.6504 REMARK 3 T TENSOR REMARK 3 T11: 0.1841 T22: 0.2313 REMARK 3 T33: 0.2091 T12: 0.0009 REMARK 3 T13: 0.0083 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 7.4587 L22: 3.9411 REMARK 3 L33: 1.4344 L12: -3.1232 REMARK 3 L13: 0.4243 L23: -0.7265 REMARK 3 S TENSOR REMARK 3 S11: 0.2196 S12: 0.6111 S13: -0.4363 REMARK 3 S21: -0.3240 S22: -0.2228 S23: 0.0485 REMARK 3 S31: 0.0631 S32: 0.0189 S33: -0.0110 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 46:102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1816 10.2457 -4.7781 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.1585 REMARK 3 T33: 0.2808 T12: 0.0013 REMARK 3 T13: 0.0175 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.9625 L22: 1.2677 REMARK 3 L33: 1.4962 L12: 0.2670 REMARK 3 L13: -0.0301 L23: 0.1869 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: 0.1356 S13: 0.1041 REMARK 3 S21: -0.0493 S22: -0.0004 S23: -0.2577 REMARK 3 S31: -0.0108 S32: 0.2030 S33: -0.0094 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 103:142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9206 14.9130 8.6217 REMARK 3 T TENSOR REMARK 3 T11: 0.2562 T22: 0.2178 REMARK 3 T33: 0.2009 T12: 0.0011 REMARK 3 T13: -0.0331 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.5329 L22: 2.5014 REMARK 3 L33: 1.0092 L12: -0.1842 REMARK 3 L13: 0.2143 L23: 0.5783 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: -0.3026 S13: 0.2043 REMARK 3 S21: 0.3669 S22: 0.0291 S23: -0.1132 REMARK 3 S31: -0.0902 S32: -0.0070 S33: -0.0240 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 143:227 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8164 21.1928 -10.3233 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.1449 REMARK 3 T33: 0.2184 T12: 0.0096 REMARK 3 T13: 0.0392 T23: 0.0560 REMARK 3 L TENSOR REMARK 3 L11: 3.4217 L22: 1.9667 REMARK 3 L33: 1.6723 L12: -0.8209 REMARK 3 L13: 0.8432 L23: -0.1581 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: 0.3235 S13: 0.3598 REMARK 3 S21: -0.0743 S22: -0.0648 S23: -0.1890 REMARK 3 S31: -0.0450 S32: 0.1168 S33: 0.0313 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 228:286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2710 19.6091 -3.0339 REMARK 3 T TENSOR REMARK 3 T11: 0.1750 T22: 0.1464 REMARK 3 T33: 0.2032 T12: 0.0300 REMARK 3 T13: 0.0059 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 2.2314 L22: 1.7795 REMARK 3 L33: 0.8955 L12: -0.0007 REMARK 3 L13: -0.1126 L23: -0.2307 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: 0.0835 S13: 0.3741 REMARK 3 S21: 0.0501 S22: 0.0356 S23: 0.0332 REMARK 3 S31: -0.2048 S32: -0.0678 S33: -0.0330 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 287:321 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.6289 12.6680 1.2395 REMARK 3 T TENSOR REMARK 3 T11: 0.2110 T22: 0.1360 REMARK 3 T33: 0.1913 T12: 0.0166 REMARK 3 T13: -0.0170 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 2.6026 L22: 2.7366 REMARK 3 L33: 3.9331 L12: -0.7916 REMARK 3 L13: 0.5340 L23: -0.5574 REMARK 3 S TENSOR REMARK 3 S11: -0.2136 S12: -0.3064 S13: 0.0555 REMARK 3 S21: 0.5136 S22: 0.0647 S23: -0.0413 REMARK 3 S31: -0.3385 S32: -0.1628 S33: 0.1062 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D85 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1587 REMARK 200 MONOCHROMATOR : SIDE SCATTERING I-BEAM BENT REMARK 200 SINGLE CRYSTAL; ASYMMETRIC CUT REMARK 200 4.9650 DEG. REMARK 200 OPTICS : RH COATED FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25115 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 39.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9-1.1 M SODIUM CITRATE, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.37050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.70400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.37050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.70400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -56.74100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 588 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 636 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 SER A 5 REMARK 465 GLN A 6 REMARK 465 ALA A 7 REMARK 465 CYS A 8 REMARK 465 GLY A 322 REMARK 465 VAL A 323 REMARK 465 LYS A 324 REMARK 465 SER A 325 REMARK 465 GLU A 326 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 147 O HOH A 501 1.96 REMARK 500 O HOH A 583 O HOH A 657 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 185 -66.52 -133.71 REMARK 500 LEU A 307 -111.93 -118.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P1T A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D84 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH ONLY PLP REMARK 900 RELATED ID: 5D86 RELATED DB: PDB REMARK 900 RELATED ID: 5D87 RELATED DB: PDB DBREF 5D85 A 1 326 UNP A6QDA0 SBNA_STAAE 1 326 SEQRES 1 A 326 MET ILE GLU LYS SER GLN ALA CYS HIS ASP SER LEU LEU SEQRES 2 A 326 ASP SER VAL GLY GLN THR PRO MET VAL GLN LEU HIS GLN SEQRES 3 A 326 LEU PHE PRO LYS HIS GLU VAL PHE ALA LYS LEU GLU TYR SEQRES 4 A 326 MET ASN PRO GLY GLY SER MET LYS ASP ARG PRO ALA LYS SEQRES 5 A 326 TYR ILE ILE GLU HIS GLY ILE LYS HIS GLY LEU ILE THR SEQRES 6 A 326 GLU ASN THR HIS LEU ILE GLU SER THR SER GLY ASN LEU SEQRES 7 A 326 GLY ILE ALA LEU ALA MET ILE ALA LYS ILE LYS GLY LEU SEQRES 8 A 326 LYS LEU THR CYS VAL VAL ASP PRO LYS ILE SER PRO THR SEQRES 9 A 326 ASN LEU LYS ILE ILE LYS SER TYR GLY ALA ASN VAL GLU SEQRES 10 A 326 MET VAL GLU GLU PRO ASP ALA HIS GLY GLY TYR LEU MET SEQRES 11 A 326 THR ARG ILE ALA LYS VAL GLN GLU LEU LEU ALA THR ILE SEQRES 12 A 326 ASP ASP ALA TYR TRP ILE ASN GLN TYR ALA ASN GLU LEU SEQRES 13 A 326 ASN TRP GLN SER HIS TYR HIS GLY ALA GLY THR GLU ILE SEQRES 14 A 326 VAL GLU THR ILE LYS GLN PRO ILE ASP TYR PHE VAL ALA SEQRES 15 A 326 PRO VAL SER THR THR GLY SER ILE MET GLY MET SER ARG SEQRES 16 A 326 LYS ILE LYS GLU VAL HIS PRO ASN ALA GLN ILE VAL ALA SEQRES 17 A 326 VAL ASP ALA LYS GLY SER VAL ILE PHE GLY ASP LYS PRO SEQRES 18 A 326 ILE ASN ARG GLU LEU PRO GLY ILE GLY ALA SER ARG VAL SEQRES 19 A 326 PRO GLU ILE LEU ASN ARG SER GLU ILE ASN GLN VAL ILE SEQRES 20 A 326 HIS VAL ASP ASP TYR GLN SER ALA LEU GLY CYS ARG LYS SEQRES 21 A 326 LEU ILE ASP TYR GLU GLY ILE PHE ALA GLY GLY SER THR SEQRES 22 A 326 GLY SER ILE ILE ALA ALA ILE GLU GLN LEU ILE THR SER SEQRES 23 A 326 ILE GLU GLU GLY ALA THR ILE VAL THR ILE LEU PRO ASP SEQRES 24 A 326 ARG GLY ASP ARG TYR LEU ASP LEU VAL TYR SER ASP THR SEQRES 25 A 326 TRP LEU GLU LYS MET LYS SER ARG GLN GLY VAL LYS SER SEQRES 26 A 326 GLU HET FLC A 401 13 HET P1T A 402 21 HET GOL A 403 6 HETNAM FLC CITRATE ANION HETNAM P1T 2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY) HETNAM 2 P1T METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FLC C6 H5 O7 3- FORMUL 3 P1T C11 H15 N2 O7 P FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *175(H2 O) HELIX 1 AA1 SER A 11 VAL A 16 5 6 HELIX 2 AA2 GLU A 38 ASN A 41 5 4 HELIX 3 AA3 LYS A 47 HIS A 61 1 15 HELIX 4 AA4 GLY A 76 GLY A 90 1 15 HELIX 5 AA5 SER A 102 TYR A 112 1 11 HELIX 6 AA6 TYR A 128 ILE A 143 1 16 HELIX 7 AA7 ASN A 154 HIS A 163 1 10 HELIX 8 AA8 GLY A 164 ILE A 173 1 10 HELIX 9 AA9 THR A 187 HIS A 201 1 15 HELIX 10 AB1 SER A 214 GLY A 218 5 5 HELIX 11 AB2 ASN A 239 ILE A 243 5 5 HELIX 12 AB3 ASP A 250 GLY A 266 1 17 HELIX 13 AB4 GLY A 270 ILE A 284 1 15 HELIX 14 AB5 THR A 285 ILE A 287 5 3 HELIX 15 AB6 ARG A 300 TYR A 304 5 5 HELIX 16 AB7 SER A 310 GLN A 321 1 12 SHEET 1 AA1 6 MET A 21 GLN A 23 0 SHEET 2 AA1 6 GLU A 32 LYS A 36 -1 O ALA A 35 N VAL A 22 SHEET 3 AA1 6 THR A 292 ILE A 296 1 O ILE A 293 N PHE A 34 SHEET 4 AA1 6 TYR A 179 PRO A 183 1 N VAL A 181 O VAL A 294 SHEET 5 AA1 6 GLN A 205 ALA A 211 1 O VAL A 207 N PHE A 180 SHEET 6 AA1 6 GLN A 245 VAL A 249 1 O GLN A 245 N ALA A 208 SHEET 1 AA2 4 ASN A 115 MET A 118 0 SHEET 2 AA2 4 LYS A 92 VAL A 97 1 N CYS A 95 O GLU A 117 SHEET 3 AA2 4 HIS A 69 SER A 73 1 N GLU A 72 O VAL A 96 SHEET 4 AA2 4 ALA A 146 TRP A 148 1 O TYR A 147 N ILE A 71 SITE 1 AC1 14 SER A 75 LYS A 100 GLY A 127 TYR A 128 SITE 2 AC1 14 LEU A 129 ARG A 132 ARG A 224 GLY A 228 SITE 3 AC1 14 ALA A 231 SER A 232 HOH A 515 HOH A 518 SITE 4 AC1 14 HOH A 520 HOH A 579 SITE 1 AC2 19 LYS A 47 THR A 74 SER A 75 ASN A 77 SITE 2 AC2 19 LEU A 78 GLN A 151 VAL A 184 SER A 185 SITE 3 AC2 19 THR A 186 THR A 187 GLY A 188 SER A 189 SITE 4 AC2 19 GLY A 228 SER A 272 PRO A 298 ASP A 299 SITE 5 AC2 19 HOH A 558 HOH A 569 HOH A 609 SITE 1 AC3 4 GLN A 137 ILE A 247 HIS A 248 GLN A 282 CRYST1 56.741 117.408 47.818 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017624 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020913 0.00000