HEADER DNA BINDING PROTEIN 17-AUG-15 5D8E TITLE CRYSTAL STRUCTURE OF SSB FROM HOMO SAPIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOSS COMPLEX SUBUNIT B1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 1-109; COMPND 5 SYNONYM: NUCLEIC ACID-BINDING PROTEIN 2, COMPND 6 OLIGONUCLEOTIDE/OLIGOSACCHARIDE-BINDING FOLD-CONTAINING PROTEIN 2B, COMPND 7 SENSOR OF SINGLE-STRAND DNA COMPLEX SUBUNIT B1,SENSOR OF SSDNA COMPND 8 SUBUNIT B1,SOSS-B1,SINGLE-STRANDED DNA-BINDING PROTEIN 1,HSSB1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NABP2, OBFC2B, SSB1, LP3587; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS SINGLE-STRAND DNA BINDING, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.LI,Z.Q.GAO,Y.H.DONG REVDAT 1 17-AUG-16 5D8E 0 JRNL AUTH Y.H.LI,Z.Q.GAO,Y.H.DONG JRNL TITL CRYSTAL STRUCTURE OF SSB FROM HOMO SAPIENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 18168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.267 REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.8495 - 5.7067 0.95 2633 134 0.2451 0.2753 REMARK 3 2 5.7067 - 4.5398 0.95 2577 120 0.2164 0.2415 REMARK 3 3 4.5398 - 3.9689 0.93 2472 127 0.2367 0.2644 REMARK 3 4 3.9689 - 3.6074 0.88 2327 126 0.2754 0.2939 REMARK 3 5 3.6074 - 3.3496 0.87 2280 139 0.3512 0.4189 REMARK 3 6 3.3496 - 3.1525 0.94 2472 141 0.3536 0.3768 REMARK 3 7 3.1525 - 3.0000 0.93 2456 142 0.3806 0.3892 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3285 REMARK 3 ANGLE : 1.540 4422 REMARK 3 CHIRALITY : 0.063 514 REMARK 3 PLANARITY : 0.006 553 REMARK 3 DIHEDRAL : 17.172 1218 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5D8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18515 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 50.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX 1.9_1692 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.0, 16% JEFFAMINE M-600, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.94000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.88000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.88000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.94000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 SER A 109 REMARK 465 HIS A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 HIS A 113 REMARK 465 HIS A 114 REMARK 465 HIS A 115 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 VAL B 58 REMARK 465 GLY B 59 REMARK 465 ASN B 60 REMARK 465 LEU B 61 REMARK 465 HIS B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 465 HIS B 113 REMARK 465 HIS B 114 REMARK 465 HIS B 115 REMARK 465 MSE C 1 REMARK 465 THR C 2 REMARK 465 THR C 3 REMARK 465 SER C 109 REMARK 465 HIS C 110 REMARK 465 HIS C 111 REMARK 465 HIS C 112 REMARK 465 HIS C 113 REMARK 465 HIS C 114 REMARK 465 HIS C 115 REMARK 465 MSE D 1 REMARK 465 THR D 2 REMARK 465 VAL D 58 REMARK 465 GLY D 59 REMARK 465 ASN D 60 REMARK 465 LEU D 61 REMARK 465 HIS D 110 REMARK 465 HIS D 111 REMARK 465 HIS D 112 REMARK 465 HIS D 113 REMARK 465 HIS D 114 REMARK 465 HIS D 115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS C 15 O GLY C 73 1.51 REMARK 500 CE1 PHE B 78 OH TYR B 85 1.66 REMARK 500 O GLY D 13 O ALA D 75 1.77 REMARK 500 NZ LYS B 72 O GLY B 89 1.78 REMARK 500 OD1 ASP A 45 OG1 THR A 47 1.86 REMARK 500 CZ PHE B 78 CZ TYR B 85 1.95 REMARK 500 CZ PHE B 78 CE1 TYR B 85 1.95 REMARK 500 CZ PHE B 78 OH TYR B 85 2.00 REMARK 500 CD2 PHE B 6 OD2 ASP B 9 2.04 REMARK 500 OD1 ASN B 18 N LYS B 72 2.04 REMARK 500 ND2 ASN D 16 NH1 ARG D 88 2.05 REMARK 500 OG1 THR D 32 OD1 ASP D 34 2.05 REMARK 500 O LEU C 19 N MSE C 70 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLY A 80 OH TYR D 74 4545 2.05 REMARK 500 OD1 ASP A 34 NZ LYS B 33 3654 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 106 CD PRO B 106 N -0.265 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 12 C - N - CD ANGL. DEV. = 18.1 DEGREES REMARK 500 PRO B 106 N - CD - CG ANGL. DEV. = 9.3 DEGREES REMARK 500 GLY C 27 N - CA - C ANGL. DEV. = 18.0 DEGREES REMARK 500 GLY C 87 N - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 GLY D 87 N - CA - C ANGL. DEV. = 18.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 28 78.11 51.51 REMARK 500 THR A 47 -1.89 -168.69 REMARK 500 ILE A 50 148.70 178.01 REMARK 500 ASP A 56 109.90 -174.50 REMARK 500 PHE A 98 98.73 -165.34 REMARK 500 TYR A 102 111.44 -165.34 REMARK 500 PRO A 106 -157.68 -69.04 REMARK 500 LYS B 8 28.19 -78.41 REMARK 500 LYS B 11 -63.50 -137.41 REMARK 500 LEU B 14 -173.63 -62.85 REMARK 500 LYS B 15 142.88 111.07 REMARK 500 ASN B 16 61.72 34.79 REMARK 500 LEU B 19 165.13 178.66 REMARK 500 LEU B 24 -76.14 -90.77 REMARK 500 ASP B 45 -157.34 -150.07 REMARK 500 THR B 47 -75.90 -105.13 REMARK 500 PHE B 78 -87.09 -112.27 REMARK 500 LYS B 79 -34.18 -132.07 REMARK 500 CYS B 81 -178.29 64.61 REMARK 500 ARG B 88 -117.56 62.67 REMARK 500 PHE B 108 157.71 -48.03 REMARK 500 THR C 5 131.72 -170.84 REMARK 500 ASP C 9 49.72 -86.88 REMARK 500 LYS C 15 -128.22 67.45 REMARK 500 THR C 26 -112.90 -132.79 REMARK 500 ASP C 45 -160.94 -161.43 REMARK 500 ILE C 50 132.99 -176.23 REMARK 500 ASN C 60 40.29 -142.15 REMARK 500 SER C 76 141.59 -178.99 REMARK 500 LYS C 79 -155.53 53.53 REMARK 500 ARG C 88 55.02 -65.44 REMARK 500 THR D 5 -165.58 -166.68 REMARK 500 VAL D 7 -86.75 -61.28 REMARK 500 LYS D 8 -18.78 -48.31 REMARK 500 LEU D 14 -26.51 90.47 REMARK 500 LYS D 15 -130.57 52.30 REMARK 500 ASP D 56 38.75 73.32 REMARK 500 CYS D 81 146.65 76.79 REMARK 500 ASP D 91 104.54 -162.67 REMARK 500 PRO D 106 162.30 -44.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 11 PRO B 12 30.17 REMARK 500 PHE D 78 LYS D 79 -143.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D8F RELATED DB: PDB DBREF 5D8E A 1 109 UNP Q9BQ15 SOSB1_HUMAN 1 109 DBREF 5D8E B 1 109 UNP Q9BQ15 SOSB1_HUMAN 1 109 DBREF 5D8E C 1 109 UNP Q9BQ15 SOSB1_HUMAN 1 109 DBREF 5D8E D 1 109 UNP Q9BQ15 SOSB1_HUMAN 1 109 SEQADV 5D8E MSE A 70 UNP Q9BQ15 LEU 70 ENGINEERED MUTATION SEQADV 5D8E HIS A 110 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS A 111 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS A 112 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS A 113 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS A 114 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS A 115 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E MSE B 70 UNP Q9BQ15 LEU 70 ENGINEERED MUTATION SEQADV 5D8E HIS B 110 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS B 111 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS B 112 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS B 113 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS B 114 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS B 115 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E MSE C 70 UNP Q9BQ15 LEU 70 ENGINEERED MUTATION SEQADV 5D8E HIS C 110 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS C 111 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS C 112 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS C 113 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS C 114 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS C 115 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E MSE D 70 UNP Q9BQ15 LEU 70 ENGINEERED MUTATION SEQADV 5D8E HIS D 110 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS D 111 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS D 112 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS D 113 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS D 114 UNP Q9BQ15 EXPRESSION TAG SEQADV 5D8E HIS D 115 UNP Q9BQ15 EXPRESSION TAG SEQRES 1 A 115 MSE THR THR GLU THR PHE VAL LYS ASP ILE LYS PRO GLY SEQRES 2 A 115 LEU LYS ASN LEU ASN LEU ILE PHE ILE VAL LEU GLU THR SEQRES 3 A 115 GLY ARG VAL THR LYS THR LYS ASP GLY HIS GLU VAL ARG SEQRES 4 A 115 THR CYS LYS VAL ALA ASP LYS THR GLY SER ILE ASN ILE SEQRES 5 A 115 SER VAL TRP ASP ASP VAL GLY ASN LEU ILE GLN PRO GLY SEQRES 6 A 115 ASP ILE ILE ARG MSE THR LYS GLY TYR ALA SER VAL PHE SEQRES 7 A 115 LYS GLY CYS LEU THR LEU TYR THR GLY ARG GLY GLY ASP SEQRES 8 A 115 LEU GLN LYS ILE GLY GLU PHE CYS MSE VAL TYR SER GLU SEQRES 9 A 115 VAL PRO ASN PHE SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 115 MSE THR THR GLU THR PHE VAL LYS ASP ILE LYS PRO GLY SEQRES 2 B 115 LEU LYS ASN LEU ASN LEU ILE PHE ILE VAL LEU GLU THR SEQRES 3 B 115 GLY ARG VAL THR LYS THR LYS ASP GLY HIS GLU VAL ARG SEQRES 4 B 115 THR CYS LYS VAL ALA ASP LYS THR GLY SER ILE ASN ILE SEQRES 5 B 115 SER VAL TRP ASP ASP VAL GLY ASN LEU ILE GLN PRO GLY SEQRES 6 B 115 ASP ILE ILE ARG MSE THR LYS GLY TYR ALA SER VAL PHE SEQRES 7 B 115 LYS GLY CYS LEU THR LEU TYR THR GLY ARG GLY GLY ASP SEQRES 8 B 115 LEU GLN LYS ILE GLY GLU PHE CYS MSE VAL TYR SER GLU SEQRES 9 B 115 VAL PRO ASN PHE SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 115 MSE THR THR GLU THR PHE VAL LYS ASP ILE LYS PRO GLY SEQRES 2 C 115 LEU LYS ASN LEU ASN LEU ILE PHE ILE VAL LEU GLU THR SEQRES 3 C 115 GLY ARG VAL THR LYS THR LYS ASP GLY HIS GLU VAL ARG SEQRES 4 C 115 THR CYS LYS VAL ALA ASP LYS THR GLY SER ILE ASN ILE SEQRES 5 C 115 SER VAL TRP ASP ASP VAL GLY ASN LEU ILE GLN PRO GLY SEQRES 6 C 115 ASP ILE ILE ARG MSE THR LYS GLY TYR ALA SER VAL PHE SEQRES 7 C 115 LYS GLY CYS LEU THR LEU TYR THR GLY ARG GLY GLY ASP SEQRES 8 C 115 LEU GLN LYS ILE GLY GLU PHE CYS MSE VAL TYR SER GLU SEQRES 9 C 115 VAL PRO ASN PHE SER HIS HIS HIS HIS HIS HIS SEQRES 1 D 115 MSE THR THR GLU THR PHE VAL LYS ASP ILE LYS PRO GLY SEQRES 2 D 115 LEU LYS ASN LEU ASN LEU ILE PHE ILE VAL LEU GLU THR SEQRES 3 D 115 GLY ARG VAL THR LYS THR LYS ASP GLY HIS GLU VAL ARG SEQRES 4 D 115 THR CYS LYS VAL ALA ASP LYS THR GLY SER ILE ASN ILE SEQRES 5 D 115 SER VAL TRP ASP ASP VAL GLY ASN LEU ILE GLN PRO GLY SEQRES 6 D 115 ASP ILE ILE ARG MSE THR LYS GLY TYR ALA SER VAL PHE SEQRES 7 D 115 LYS GLY CYS LEU THR LEU TYR THR GLY ARG GLY GLY ASP SEQRES 8 D 115 LEU GLN LYS ILE GLY GLU PHE CYS MSE VAL TYR SER GLU SEQRES 9 D 115 VAL PRO ASN PHE SER HIS HIS HIS HIS HIS HIS MODRES 5D8E MSE A 100 MET MODIFIED RESIDUE MODRES 5D8E MSE B 100 MET MODIFIED RESIDUE MODRES 5D8E MSE C 100 MET MODIFIED RESIDUE MODRES 5D8E MSE D 100 MET MODIFIED RESIDUE HET MSE A 70 8 HET MSE A 100 8 HET MSE B 70 8 HET MSE B 100 8 HET MSE C 70 8 HET MSE C 100 8 HET MSE D 70 8 HET MSE D 100 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) HELIX 1 AA1 VAL A 58 ILE A 62 5 5 SHEET 1 AA1 6 LEU A 19 LYS A 31 0 SHEET 2 AA1 6 GLU A 37 ASP A 45 -1 O LYS A 42 N LEU A 24 SHEET 3 AA1 6 GLY A 48 TRP A 55 -1 O VAL A 54 N ARG A 39 SHEET 4 AA1 6 CYS A 81 GLY A 96 1 O LEU A 84 N SER A 53 SHEET 5 AA1 6 ILE A 67 PHE A 78 -1 N TYR A 74 O TYR A 85 SHEET 6 AA1 6 LEU A 19 LYS A 31 -1 N LEU A 19 O MSE A 70 SHEET 1 AA2 6 PHE B 21 THR B 26 0 SHEET 2 AA2 6 VAL B 38 ALA B 44 -1 O ALA B 44 N ILE B 22 SHEET 3 AA2 6 ASN B 51 TRP B 55 -1 O ILE B 52 N CYS B 41 SHEET 4 AA2 6 LEU B 82 GLU B 97 1 O LEU B 84 N SER B 53 SHEET 5 AA2 6 ASP B 66 VAL B 77 -1 N TYR B 74 O TYR B 85 SHEET 6 AA2 6 PHE B 21 THR B 26 -1 N PHE B 21 O ILE B 68 SHEET 1 AA3 7 LEU C 92 GLU C 97 0 SHEET 2 AA3 7 ASP C 66 PHE C 78 -1 N ILE C 67 O GLY C 96 SHEET 3 AA3 7 CYS C 81 TYR C 85 -1 O THR C 83 N SER C 76 SHEET 4 AA3 7 ILE C 50 TRP C 55 1 N SER C 53 O LEU C 84 SHEET 5 AA3 7 GLU C 37 ALA C 44 -1 N ARG C 39 O VAL C 54 SHEET 6 AA3 7 LEU C 17 LYS C 31 -1 N ILE C 22 O ALA C 44 SHEET 7 AA3 7 ASP C 66 PHE C 78 -1 O MSE C 70 N LEU C 19 SHEET 1 AA4 7 ALA D 75 VAL D 77 0 SHEET 2 AA4 7 LEU D 82 LEU D 84 -1 O THR D 83 N SER D 76 SHEET 3 AA4 7 ILE D 50 TRP D 55 1 N SER D 53 O LEU D 84 SHEET 4 AA4 7 VAL D 38 ALA D 44 -1 N ARG D 39 O VAL D 54 SHEET 5 AA4 7 LEU D 17 THR D 26 -1 N GLU D 25 O LYS D 42 SHEET 6 AA4 7 ASP D 66 GLY D 73 -1 O MSE D 70 N LEU D 19 SHEET 7 AA4 7 ASP D 91 GLU D 97 -1 O GLN D 93 N ARG D 69 LINK C ARG A 69 N MSE A 70 1555 1555 1.33 LINK C MSE A 70 N THR A 71 1555 1555 1.32 LINK C CYS A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N VAL A 101 1555 1555 1.33 LINK CD2 LEU B 14 N ALA B 75 1555 1555 1.58 LINK C ARG B 69 N MSE B 70 1555 1555 1.32 LINK C MSE B 70 N THR B 71 1555 1555 1.32 LINK C CYS B 99 N MSE B 100 1555 1555 1.33 LINK C MSE B 100 N VAL B 101 1555 1555 1.32 LINK C ARG C 69 N MSE C 70 1555 1555 1.33 LINK C MSE C 70 N THR C 71 1555 1555 1.32 LINK C CYS C 99 N MSE C 100 1555 1555 1.33 LINK C MSE C 100 N VAL C 101 1555 1555 1.32 LINK O LYS D 11 CD1 LEU D 14 1555 1555 1.41 LINK C ARG D 69 N MSE D 70 1555 1555 1.32 LINK C MSE D 70 N THR D 71 1555 1555 1.33 LINK C CYS D 99 N MSE D 100 1555 1555 1.33 LINK C MSE D 100 N VAL D 101 1555 1555 1.33 CISPEP 1 PHE B 108 SER B 109 0 16.36 CISPEP 2 PHE D 108 SER D 109 0 -1.04 CRYST1 137.691 137.691 83.820 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007263 0.004193 0.000000 0.00000 SCALE2 0.000000 0.008386 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011930 0.00000