HEADER RIBOSOMAL PROTEIN 20-AUG-15 5DAR TITLE CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM TITLE 2 METHANOCOCCUS JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: 74 NT FRAGMENT OF 23S RRNA; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 50S RIBOSOMAL PROTEIN L10; COMPND 7 CHAIN: B, E; COMPND 8 SYNONYM: ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG,MJAL10; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 50S RIBOSOMAL PROTEIN L11; COMPND 12 CHAIN: C, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: XL1(BLUE); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PUC18; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMJA23S-74.UC18; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 11 ORGANISM_TAXID: 2190; SOURCE 12 GENE: RPL10, RPLP0, MJ0509; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: PUBS520; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_VECTOR: PET-11C; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET-11C/MJAP0NTF; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 21 ORGANISM_TAXID: 2190; SOURCE 22 GENE: RPL11, MJ0373; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 24 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 25 EXPRESSION_SYSTEM_VARIANT: PUBS520; SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-11C; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PET-11C/MJAL11 KEYWDS RIBOSOME, P-STALK, ARCHAEA, RIBOSOMAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.G.GABDULKHAKOV,I.V.MITROSHIN,M.B.GARBER REVDAT 2 10-JAN-24 5DAR 1 LINK REVDAT 1 14-SEP-16 5DAR 0 JRNL AUTH A.G.GABDULKHAKOV,I.V.MITROSHIN,M.B.GARBER JRNL TITL CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM JRNL TITL 2 METHANOCOCCUS JANNASCHII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 24191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.266 REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1293 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1714 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.3610 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5208 REMARK 3 NUCLEIC ACID ATOMS : 3176 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.90000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : -0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.521 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.859 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.812 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8832 ; 0.011 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 6967 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12666 ; 1.672 ; 1.692 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16312 ; 3.374 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 674 ; 7.709 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;38.881 ;25.989 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1045 ;19.581 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.703 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1448 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7473 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1725 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2717 ; 3.668 ; 5.551 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2716 ; 3.667 ; 5.550 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3384 ; 6.334 ; 8.306 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3385 ; 6.333 ; 8.307 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6115 ; 1.994 ; 3.477 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 6116 ; 1.994 ; 3.477 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 9283 ; 3.457 ; 5.135 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 39239 ; 9.666 ;35.567 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 39221 ; 9.656 ;35.573 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25542 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.350 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14000 REMARK 200 FOR THE DATA SET : 7.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5COL, 5D6G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL, PH 7.5, 0.15 M KCL, 20 REMARK 280 MM MGCL2, 15% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.22550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 125 REMARK 465 ILE B 126 REMARK 465 LYS B 127 REMARK 465 VAL B 128 REMARK 465 GLU B 129 REMARK 465 LYS B 130 REMARK 465 GLY B 131 REMARK 465 SER B 132 REMARK 465 THR B 133 REMARK 465 GLY B 134 REMARK 465 MET B 135 REMARK 465 PRO B 136 REMARK 465 PRO B 137 REMARK 465 GLY B 138 REMARK 465 PRO B 139 REMARK 465 PHE B 140 REMARK 465 LEU B 141 REMARK 465 GLY B 142 REMARK 465 GLU B 143 REMARK 465 LEU B 144 REMARK 465 LYS B 145 REMARK 465 SER B 146 REMARK 465 VAL B 147 REMARK 465 GLY B 148 REMARK 465 ILE B 149 REMARK 465 PRO B 150 REMARK 465 ALA B 151 REMARK 465 ALA B 152 REMARK 465 ILE B 153 REMARK 465 GLU B 154 REMARK 465 LYS B 155 REMARK 465 GLY B 156 REMARK 465 LYS B 157 REMARK 465 ILE B 158 REMARK 465 ALA B 159 REMARK 465 ILE B 160 REMARK 465 LYS B 161 REMARK 465 GLU B 162 REMARK 465 ASP B 163 REMARK 465 LYS B 164 REMARK 465 VAL B 165 REMARK 465 VAL B 166 REMARK 465 VAL B 167 REMARK 465 LYS B 168 REMARK 465 ASP B 213 REMARK 465 GLU B 214 REMARK 465 GLU B 215 REMARK 465 LYS B 216 REMARK 465 LEU B 217 REMARK 465 LEU B 218 REMARK 465 ALA B 219 REMARK 465 ASP B 220 REMARK 465 ILE B 221 REMARK 465 MET C 0 REMARK 465 GLU C 159 REMARK 465 GLU C 160 REMARK 465 GLU E 214 REMARK 465 GLU E 215 REMARK 465 LYS E 216 REMARK 465 LEU E 217 REMARK 465 LEU E 218 REMARK 465 ALA E 219 REMARK 465 ASP E 220 REMARK 465 ILE E 221 REMARK 465 MET F 0 REMARK 465 GLU F 159 REMARK 465 GLU F 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 G A 1172 O HOH A 1401 1.87 REMARK 500 OP2 U D 1170 NZ LYS F 109 1.89 REMARK 500 OH TYR B 104 NZ LYS B 211 1.91 REMARK 500 O4 U A 1192 O HOH A 1402 2.04 REMARK 500 O THR F 128 OG SER F 131 2.09 REMARK 500 O2' A D 1195 O2' C D 1214 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A1151 P G A1151 OP3 -0.120 REMARK 500 G D1151 P G D1151 OP3 -0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A1173 O5' - P - OP2 ANGL. DEV. = -6.4 DEGREES REMARK 500 A A1195 C2' - C3' - O3' ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG B 57 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 LEU C 97 CB - CA - C ANGL. DEV. = 14.6 DEGREES REMARK 500 U D1176 C2' - C3' - O3' ANGL. DEV. = 9.8 DEGREES REMARK 500 A D1180 O5' - P - OP1 ANGL. DEV. = -5.5 DEGREES REMARK 500 U D1193 O5' - P - OP1 ANGL. DEV. = -5.5 DEGREES REMARK 500 A D1195 C2' - C3' - O3' ANGL. DEV. = 12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 11 -72.23 -60.64 REMARK 500 MET B 36 150.43 -48.35 REMARK 500 ASP B 37 -3.49 59.06 REMARK 500 LYS B 53 -24.51 -157.86 REMARK 500 SER B 59 161.44 177.78 REMARK 500 ALA B 81 -18.77 -47.10 REMARK 500 ARG B 89 -131.61 65.84 REMARK 500 THR B 96 -176.00 -173.14 REMARK 500 PRO B 100 -16.75 -49.27 REMARK 500 ASN B 110 48.45 -95.11 REMARK 500 GLU B 200 107.94 -163.25 REMARK 500 ASP B 201 77.16 43.04 REMARK 500 PRO B 207 -36.09 -35.84 REMARK 500 ASP B 208 -52.65 -26.00 REMARK 500 ARG C 13 42.10 -108.16 REMARK 500 ALA C 16 37.19 -92.06 REMARK 500 PRO C 18 -77.94 -78.46 REMARK 500 PRO C 19 -51.82 -20.56 REMARK 500 TYR C 45 21.60 -76.76 REMARK 500 GLU C 46 125.46 -38.90 REMARK 500 ARG C 61 16.50 50.01 REMARK 500 THR C 72 1.94 -63.93 REMARK 500 ALA C 85 -168.88 -79.95 REMARK 500 GLU C 88 72.94 -152.29 REMARK 500 PRO C 89 140.57 -37.09 REMARK 500 ARG C 90 -3.81 65.59 REMARK 500 LEU C 118 -19.94 -49.66 REMARK 500 GLU C 155 -48.21 -148.77 REMARK 500 ALA E 10 76.97 -113.56 REMARK 500 ASP E 37 9.91 58.24 REMARK 500 GLU E 45 -70.40 -54.79 REMARK 500 ALA E 72 -73.88 -74.01 REMARK 500 ALA E 84 -55.55 -28.90 REMARK 500 ARG E 89 -133.36 53.80 REMARK 500 PRO E 100 -36.41 -33.85 REMARK 500 ASN E 110 46.74 -106.21 REMARK 500 GLU E 200 -70.83 -129.07 REMARK 500 PRO E 207 12.11 -68.51 REMARK 500 PRO F 18 -83.44 -78.36 REMARK 500 PRO F 19 -57.42 -11.76 REMARK 500 THR F 42 54.64 -112.91 REMARK 500 ARG F 90 -1.38 73.38 REMARK 500 CYS F 129 -39.48 -39.34 REMARK 500 GLU F 137 -138.48 41.90 REMARK 500 TYR F 156 -70.87 -61.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY F 138 LYS F 139 -144.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1307 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A1171 O3' REMARK 620 2 G A1172 OP1 46.6 REMARK 620 3 G A1173 OP2 105.6 113.0 REMARK 620 4 A A1180 OP1 123.3 96.0 130.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A1182 OP1 REMARK 620 2 A A1183 OP1 102.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A1183 OP2 REMARK 620 2 U A1204 O4 134.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1308 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A1216 O3' REMARK 620 2 SER B 59 O 97.8 REMARK 620 3 ASN B 61 OD1 76.1 93.5 REMARK 620 4 ALA B 91 O 162.2 64.5 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1402 O REMARK 620 2 HOH A1405 O 169.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 201 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS C 110 O REMARK 620 2 MET C 113 O 66.6 REMARK 620 3 SER C 115 O 92.4 92.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D1304 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A D1179 O3' REMARK 620 2 A D1179 O2' 52.3 REMARK 620 3 A D1180 OP2 49.2 68.5 REMARK 620 4 C D1182 OP1 94.8 113.7 50.3 REMARK 620 5 A D1183 OP2 146.4 136.3 153.9 104.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A D1180 OP2 REMARK 620 2 C D1182 OP1 65.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A D1183 OP2 REMARK 620 2 U D1204 O4 130.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D1401 O REMARK 620 2 HOH D1402 O 79.0 REMARK 620 3 HOH D1404 O 92.1 99.3 REMARK 620 4 HOH D1405 O 91.9 169.1 87.0 REMARK 620 5 HOH D1406 O 164.2 96.9 73.3 93.4 REMARK 620 6 HOH D1407 O 85.1 96.5 163.2 76.5 110.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K F 202 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET F 113 O REMARK 620 2 LEU F 114 O 75.3 REMARK 620 3 SER F 115 O 97.6 58.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K D 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL F 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K F 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D8H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM REMARK 900 METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON REMARK 900 RELATED ID: 5D6G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FRAGMENT OF RIBOSOMAL PROTEIN P0 IN COMPLEX REMARK 900 WITH 74NT 23S RNA FROM METHANOCOCCUS JANNASCHII REMARK 900 RELATED ID: 5COL RELATED DB: PDB REMARK 900 RIBOSOMAL PROTEIN L11 FROM METHANOCOCCUS JANNASCHII DBREF1 5DAR A 1151 1224 GB NR_077055.1 DBREF2 5DAR A 470491724 1151 1224 DBREF 5DAR B 9 221 UNP P54049 RL10_METJA 9 221 DBREF 5DAR C 0 160 UNP P54030 RL11_METJA 1 161 DBREF1 5DAR D 1151 1224 GB NR_077055.1 DBREF2 5DAR D 470491724 1151 1224 DBREF 5DAR E 9 221 UNP P54049 RL10_METJA 9 221 DBREF 5DAR F 0 160 UNP P54030 RL11_METJA 1 161 SEQADV 5DAR C A 1224 GB 470491724 U 1224 CONFLICT SEQADV 5DAR MET B 9 UNP P54049 VAL 9 CONFLICT SEQADV 5DAR C D 1224 GB 470491724 U 1224 CONFLICT SEQADV 5DAR MET E 9 UNP P54049 VAL 9 CONFLICT SEQRES 1 A 74 G C C U A A G A C A G C G SEQRES 2 A 74 G G G A G G U U G G C U U SEQRES 3 A 74 A G A A G C A G C C A U C SEQRES 4 A 74 C U U U A A A G A G U G C SEQRES 5 A 74 G U A A C A G C U C A C C SEQRES 6 A 74 C G U C G A G G C SEQRES 1 B 213 MET ALA PRO TRP LYS ILE GLU GLU VAL LYS THR LEU LYS SEQRES 2 B 213 GLY LEU ILE LYS SER LYS PRO VAL VAL ALA ILE VAL ASP SEQRES 3 B 213 MET MET ASP VAL PRO ALA PRO GLN LEU GLN GLU ILE ARG SEQRES 4 B 213 ASP LYS ILE ARG ASP LYS VAL LYS LEU ARG MET SER ARG SEQRES 5 B 213 ASN THR LEU ILE ILE ARG ALA LEU LYS GLU ALA ALA GLU SEQRES 6 B 213 GLU LEU ASN ASN PRO LYS LEU ALA GLU LEU ALA ASN TYR SEQRES 7 B 213 VAL GLU ARG GLY ALA ALA ILE LEU VAL THR ASP MET ASN SEQRES 8 B 213 PRO PHE LYS LEU TYR LYS LEU LEU GLU GLU ASN LYS SER SEQRES 9 B 213 PRO ALA PRO VAL ARG GLY GLY GLN ILE ALA PRO CYS ASP SEQRES 10 B 213 ILE LYS VAL GLU LYS GLY SER THR GLY MET PRO PRO GLY SEQRES 11 B 213 PRO PHE LEU GLY GLU LEU LYS SER VAL GLY ILE PRO ALA SEQRES 12 B 213 ALA ILE GLU LYS GLY LYS ILE ALA ILE LYS GLU ASP LYS SEQRES 13 B 213 VAL VAL VAL LYS LYS GLY GLU VAL VAL SER PRO LYS LEU SEQRES 14 B 213 ALA ALA VAL LEU ASP ARG LEU GLY ILE LYS PRO ILE LYS SEQRES 15 B 213 VAL GLY LEU ASN ILE LEU ALA VAL TYR GLU ASP GLY ILE SEQRES 16 B 213 ILE TYR THR PRO ASP VAL LEU LYS VAL ASP GLU GLU LYS SEQRES 17 B 213 LEU LEU ALA ASP ILE SEQRES 1 C 161 MET ALA LYS GLU VAL VAL GLU VAL LEU VAL THR GLY GLY SEQRES 2 C 161 ARG ALA THR ALA GLY PRO PRO LEU GLY PRO ALA ILE GLY SEQRES 3 C 161 PRO LEU GLY VAL ASN VAL MET GLN VAL VAL LYS GLU ILE SEQRES 4 C 161 ASN GLU LYS THR LYS ASP TYR GLU GLY MET GLN VAL PRO SEQRES 5 C 161 VAL LYS VAL ILE VAL ASP THR GLU THR ARG LYS PHE GLU SEQRES 6 C 161 ILE GLU VAL GLY ILE PRO PRO THR THR ALA LEU ILE LYS SEQRES 7 C 161 LYS GLU LEU GLY ILE GLU THR ALA ALA HIS GLU PRO ARG SEQRES 8 C 161 HIS GLU VAL VAL GLY ASN LEU THR LEU GLU GLN VAL ILE SEQRES 9 C 161 LYS ILE ALA LYS MET LYS LYS ASP ALA MET LEU SER TYR SEQRES 10 C 161 THR LEU LYS ASN ALA VAL LYS GLU VAL LEU GLY THR CYS SEQRES 11 C 161 GLY SER MET GLY VAL THR VAL GLU GLY LYS ASP PRO LYS SEQRES 12 C 161 GLU VAL GLN LYS GLU ILE ASP ALA GLY VAL TYR ASP GLU SEQRES 13 C 161 TYR PHE LYS GLU GLU SEQRES 1 D 74 G C C U A A G A C A G C G SEQRES 2 D 74 G G G A G G U U G G C U U SEQRES 3 D 74 A G A A G C A G C C A U C SEQRES 4 D 74 C U U U A A A G A G U G C SEQRES 5 D 74 G U A A C A G C U C A C C SEQRES 6 D 74 C G U C G A G G C SEQRES 1 E 213 MET ALA PRO TRP LYS ILE GLU GLU VAL LYS THR LEU LYS SEQRES 2 E 213 GLY LEU ILE LYS SER LYS PRO VAL VAL ALA ILE VAL ASP SEQRES 3 E 213 MET MET ASP VAL PRO ALA PRO GLN LEU GLN GLU ILE ARG SEQRES 4 E 213 ASP LYS ILE ARG ASP LYS VAL LYS LEU ARG MET SER ARG SEQRES 5 E 213 ASN THR LEU ILE ILE ARG ALA LEU LYS GLU ALA ALA GLU SEQRES 6 E 213 GLU LEU ASN ASN PRO LYS LEU ALA GLU LEU ALA ASN TYR SEQRES 7 E 213 VAL GLU ARG GLY ALA ALA ILE LEU VAL THR ASP MET ASN SEQRES 8 E 213 PRO PHE LYS LEU TYR LYS LEU LEU GLU GLU ASN LYS SER SEQRES 9 E 213 PRO ALA PRO VAL ARG GLY GLY GLN ILE ALA PRO CYS ASP SEQRES 10 E 213 ILE LYS VAL GLU LYS GLY SER THR GLY MET PRO PRO GLY SEQRES 11 E 213 PRO PHE LEU GLY GLU LEU LYS SER VAL GLY ILE PRO ALA SEQRES 12 E 213 ALA ILE GLU LYS GLY LYS ILE ALA ILE LYS GLU ASP LYS SEQRES 13 E 213 VAL VAL VAL LYS LYS GLY GLU VAL VAL SER PRO LYS LEU SEQRES 14 E 213 ALA ALA VAL LEU ASP ARG LEU GLY ILE LYS PRO ILE LYS SEQRES 15 E 213 VAL GLY LEU ASN ILE LEU ALA VAL TYR GLU ASP GLY ILE SEQRES 16 E 213 ILE TYR THR PRO ASP VAL LEU LYS VAL ASP GLU GLU LYS SEQRES 17 E 213 LEU LEU ALA ASP ILE SEQRES 1 F 161 MET ALA LYS GLU VAL VAL GLU VAL LEU VAL THR GLY GLY SEQRES 2 F 161 ARG ALA THR ALA GLY PRO PRO LEU GLY PRO ALA ILE GLY SEQRES 3 F 161 PRO LEU GLY VAL ASN VAL MET GLN VAL VAL LYS GLU ILE SEQRES 4 F 161 ASN GLU LYS THR LYS ASP TYR GLU GLY MET GLN VAL PRO SEQRES 5 F 161 VAL LYS VAL ILE VAL ASP THR GLU THR ARG LYS PHE GLU SEQRES 6 F 161 ILE GLU VAL GLY ILE PRO PRO THR THR ALA LEU ILE LYS SEQRES 7 F 161 LYS GLU LEU GLY ILE GLU THR ALA ALA HIS GLU PRO ARG SEQRES 8 F 161 HIS GLU VAL VAL GLY ASN LEU THR LEU GLU GLN VAL ILE SEQRES 9 F 161 LYS ILE ALA LYS MET LYS LYS ASP ALA MET LEU SER TYR SEQRES 10 F 161 THR LEU LYS ASN ALA VAL LYS GLU VAL LEU GLY THR CYS SEQRES 11 F 161 GLY SER MET GLY VAL THR VAL GLU GLY LYS ASP PRO LYS SEQRES 12 F 161 GLU VAL GLN LYS GLU ILE ASP ALA GLY VAL TYR ASP GLU SEQRES 13 F 161 TYR PHE LYS GLU GLU HET MG A1301 1 HET MG A1302 1 HET MG A1303 1 HET MG A1304 1 HET MG A1305 1 HET CL A1306 1 HET K A1307 1 HET K A1308 1 HET CL B 301 1 HET K C 201 1 HET MG D1301 1 HET MG D1302 1 HET MG D1303 1 HET K D1304 1 HET CL F 201 1 HET K F 202 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM K POTASSIUM ION FORMUL 7 MG 8(MG 2+) FORMUL 12 CL 3(CL 1-) FORMUL 13 K 5(K 1+) FORMUL 23 HOH *14(H2 O) HELIX 1 AA1 ALA B 10 LYS B 25 1 16 HELIX 2 AA2 PRO B 39 ILE B 50 1 12 HELIX 3 AA3 ARG B 60 ASN B 76 1 17 HELIX 4 AA4 ASN B 77 GLU B 82 1 6 HELIX 5 AA5 LEU B 83 VAL B 87 5 5 HELIX 6 AA6 ASN B 99 ASN B 110 1 12 HELIX 7 AA7 SER B 174 GLY B 185 1 12 HELIX 8 AA8 THR B 206 LYS B 211 1 6 HELIX 9 AA9 LEU C 20 GLY C 25 1 6 HELIX 10 AB1 ASN C 30 THR C 42 1 13 HELIX 11 AB2 PRO C 71 GLY C 81 1 11 HELIX 12 AB3 THR C 98 LYS C 110 1 13 HELIX 13 AB4 THR C 117 GLY C 130 1 14 HELIX 14 AB5 ASP C 140 ALA C 150 1 11 HELIX 15 AB6 ALA E 10 LYS E 25 1 16 HELIX 16 AB7 PRO E 39 ILE E 50 1 12 HELIX 17 AB8 ARG E 60 ALA E 71 1 12 HELIX 18 AB9 LEU E 83 VAL E 87 5 5 HELIX 19 AC1 ASN E 99 ASN E 110 1 12 HELIX 20 AC2 PRO E 139 VAL E 147 1 9 HELIX 21 AC3 SER E 174 GLY E 185 1 12 HELIX 22 AC4 PRO F 19 GLY F 25 1 7 HELIX 23 AC5 PRO F 26 GLY F 28 5 3 HELIX 24 AC6 ASN F 30 THR F 42 1 13 HELIX 25 AC7 PRO F 71 GLY F 81 1 11 HELIX 26 AC8 THR F 98 LYS F 109 1 12 HELIX 27 AC9 THR F 117 GLY F 130 1 14 HELIX 28 AD1 ASP F 140 ALA F 150 1 11 HELIX 29 AD2 TYR F 153 LYS F 158 1 6 SHEET 1 AA1 5 LYS B 55 MET B 58 0 SHEET 2 AA1 5 ALA B 91 THR B 96 -1 O VAL B 95 N LYS B 55 SHEET 3 AA1 5 VAL B 29 ASP B 34 -1 N ALA B 31 O LEU B 94 SHEET 4 AA1 5 ASN B 194 TYR B 199 -1 O LEU B 196 N ILE B 32 SHEET 5 AA1 5 ILE B 204 TYR B 205 -1 O TYR B 205 N VAL B 198 SHEET 1 AA2 2 LYS B 111 ALA B 114 0 SHEET 2 AA2 2 ILE B 189 GLY B 192 -1 O VAL B 191 N SER B 112 SHEET 1 AA3 3 LYS C 2 THR C 10 0 SHEET 2 AA3 3 GLN C 49 ASP C 57 -1 O VAL C 52 N VAL C 7 SHEET 3 AA3 3 LYS C 62 VAL C 67 -1 O LYS C 62 N ASP C 57 SHEET 1 AA4 2 GLY C 95 LEU C 97 0 SHEET 2 AA4 2 VAL C 134 VAL C 136 1 O THR C 135 N LEU C 97 SHEET 1 AA5 4 VAL E 54 MET E 58 0 SHEET 2 AA5 4 ALA E 91 THR E 96 -1 O ILE E 93 N ARG E 57 SHEET 3 AA5 4 VAL E 29 ASP E 34 -1 N ALA E 31 O LEU E 94 SHEET 4 AA5 4 ASN E 194 TYR E 199 -1 O ASN E 194 N ASP E 34 SHEET 1 AA6 2 LYS E 111 ALA E 114 0 SHEET 2 AA6 2 ILE E 189 GLY E 192 -1 O VAL E 191 N SER E 112 SHEET 1 AA7 2 GLN E 120 ILE E 121 0 SHEET 2 AA7 2 VAL E 172 VAL E 173 -1 O VAL E 173 N GLN E 120 SHEET 1 AA8 3 GLY E 131 SER E 132 0 SHEET 2 AA8 3 LYS E 157 ILE E 160 -1 O ILE E 160 N GLY E 131 SHEET 3 AA8 3 ALA E 151 GLU E 154 -1 N GLU E 154 O LYS E 157 SHEET 1 AA9 3 LYS F 2 THR F 10 0 SHEET 2 AA9 3 GLN F 49 ASP F 57 -1 O VAL F 56 N GLU F 3 SHEET 3 AA9 3 PHE F 63 VAL F 67 -1 O GLU F 66 N LYS F 53 SHEET 1 AB1 2 ASN F 96 LEU F 97 0 SHEET 2 AB1 2 THR F 135 VAL F 136 1 O THR F 135 N LEU F 97 LINK O6 G A1166 MG MG A1302 1555 1555 2.16 LINK O3' U A1171 K K A1307 1555 1555 3.01 LINK OP1 G A1172 K K A1307 1555 1555 3.33 LINK OP2 G A1173 K K A1307 1555 1555 2.73 LINK OP1 A A1180 K K A1307 1555 1555 3.02 LINK OP1 C A1182 MG MG A1301 1555 1555 2.90 LINK OP1 A A1183 MG MG A1301 1555 1555 2.58 LINK OP2 A A1183 MG MG A1303 1555 1555 2.20 LINK O2' A A1196 MG MG A1304 1555 1555 2.60 LINK O4 U A1204 MG MG A1303 1555 1555 2.18 LINK O3' C A1216 K K A1308 1555 1555 3.20 LINK MG MG A1305 O HOH A1402 1555 1555 1.83 LINK MG MG A1305 O HOH A1405 1555 1555 1.84 LINK K K A1308 O SER B 59 1555 1555 3.29 LINK K K A1308 OD1 ASN B 61 1555 1555 2.21 LINK K K A1308 O ALA B 91 1555 1555 3.12 LINK O LYS C 110 K K C 201 1555 1555 2.70 LINK O MET C 113 K K C 201 1555 1555 2.83 LINK O SER C 115 K K C 201 1555 1555 3.30 LINK O3' A D1179 K K D1304 1555 1555 3.11 LINK O2' A D1179 K K D1304 1555 1555 2.87 LINK OP2 A D1180 MG MG D1302 1555 1555 2.66 LINK OP2 A D1180 K K D1304 1555 1555 2.78 LINK OP1 C D1182 MG MG D1302 1555 1555 2.12 LINK OP1 C D1182 K K D1304 1555 1555 3.31 LINK OP2 A D1183 MG MG D1301 1555 1555 2.68 LINK OP2 A D1183 K K D1304 1555 1555 3.40 LINK O4 U D1204 MG MG D1301 1555 1555 2.23 LINK MG MG D1303 O HOH D1401 1555 1555 1.92 LINK MG MG D1303 O HOH D1402 1555 1555 2.67 LINK MG MG D1303 O HOH D1404 1555 1555 1.88 LINK MG MG D1303 O HOH D1405 1555 1555 2.67 LINK MG MG D1303 O HOH D1406 1555 1555 2.56 LINK MG MG D1303 O HOH D1407 1555 1555 1.83 LINK O MET F 113 K K F 202 1555 1555 3.11 LINK O LEU F 114 K K F 202 1555 1555 3.40 LINK O SER F 115 K K F 202 1555 1555 2.81 CISPEP 1 GLY C 17 PRO C 18 0 -6.74 CISPEP 2 GLY F 17 PRO F 18 0 -6.33 SITE 1 AC1 4 A A1179 A A1180 C A1182 A A1183 SITE 1 AC2 2 G A1166 U A1211 SITE 1 AC3 2 A A1183 U A1204 SITE 1 AC4 5 G A1166 A A1167 A A1196 G A1197 SITE 2 AC4 5 G A1199 SITE 1 AC5 6 U A1191 U A1192 U A1193 A A1196 SITE 2 AC5 6 HOH A1402 HOH A1405 SITE 1 AC6 3 G A1164 G A1165 A A1194 SITE 1 AC7 4 U A1171 G A1172 G A1173 A A1180 SITE 1 AC8 6 C A1216 MET B 58 SER B 59 ASN B 61 SITE 2 AC8 6 ARG B 89 ALA B 91 SITE 1 AC9 2 LYS B 79 ILE B 204 SITE 1 AD1 3 LYS C 110 MET C 113 SER C 115 SITE 1 AD2 2 A D1183 U D1204 SITE 1 AD3 2 A D1180 C D1182 SITE 1 AD4 6 HOH D1401 HOH D1402 HOH D1404 HOH D1405 SITE 2 AD4 6 HOH D1406 HOH D1407 SITE 1 AD5 4 A D1179 A D1180 C D1182 A D1183 SITE 1 AD6 3 MET F 108 LYS F 109 ALA F 112 SITE 1 AD7 4 ASP E 48 MET F 113 LEU F 114 SER F 115 CRYST1 72.396 88.451 95.231 90.00 102.19 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013813 0.000000 0.002983 0.00000 SCALE2 0.000000 0.011306 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010743 0.00000