HEADER CHAPERONE 20-AUG-15 5DAY TITLE THE STRUCTURE OF NAP1-RELATED PROTEIN(NRP1) IN ARABIDOPSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAP1-RELATED PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 19-225; COMPND 5 SYNONYM: NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A6,PROTEIN SET COMPND 6 HOMOLOG 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: NRP1, NFA6, AT1G74560, F1M20.24; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTONE CHAPERONE, NAP1-RELATED PROTEIN, TRANSCRIPTIONAL ACTIVATION, KEYWDS 2 CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHU,L.RONG,Y.YANG,C.ZHANG,H.Y.FENG,L.N.ZHENG,W.H.SHEN,J.B.MA, AUTHOR 2 A.W.DONG REVDAT 2 20-MAR-24 5DAY 1 REMARK LINK REVDAT 1 21-SEP-16 5DAY 0 JRNL AUTH Y.ZHU,L.RONG,Y.YANG,C.ZHANG,H.Y.FENG,L.N.ZHENG,W.H.SHEN, JRNL AUTH 2 J.B.MA,A.W.DONG JRNL TITL THE STRUCTURE OF NAP1-RELATED PROTEIN(NRP1) IN ARABIDOPSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2152 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 21784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2262 - 5.6106 0.95 1476 147 0.2427 0.2821 REMARK 3 2 5.6106 - 4.4545 0.98 1436 143 0.2053 0.2429 REMARK 3 3 4.4545 - 3.8918 0.99 1441 148 0.2060 0.2039 REMARK 3 4 3.8918 - 3.5361 1.00 1430 146 0.2142 0.2395 REMARK 3 5 3.5361 - 3.2828 1.00 1433 146 0.2230 0.2737 REMARK 3 6 3.2828 - 3.0893 1.00 1402 141 0.2464 0.2983 REMARK 3 7 3.0893 - 2.9346 1.00 1432 145 0.2514 0.3093 REMARK 3 8 2.9346 - 2.8068 1.00 1395 144 0.2475 0.3049 REMARK 3 9 2.8068 - 2.6988 1.00 1407 140 0.2433 0.2694 REMARK 3 10 2.6988 - 2.6057 0.99 1389 144 0.2603 0.3165 REMARK 3 11 2.6057 - 2.5242 0.99 1379 136 0.2527 0.3595 REMARK 3 12 2.5242 - 2.4521 0.99 1417 147 0.2446 0.3143 REMARK 3 13 2.4521 - 2.3875 1.00 1404 138 0.2478 0.3213 REMARK 3 14 2.3875 - 2.3293 0.96 1339 139 0.2668 0.3283 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2903 REMARK 3 ANGLE : 0.833 3928 REMARK 3 CHIRALITY : 0.048 440 REMARK 3 PLANARITY : 0.005 497 REMARK 3 DIHEDRAL : 12.468 1730 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6639 2.6014 21.3343 REMARK 3 T TENSOR REMARK 3 T11: 0.3138 T22: 0.3534 REMARK 3 T33: 0.4124 T12: -0.1058 REMARK 3 T13: -0.0294 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 0.2035 L22: 0.6969 REMARK 3 L33: 3.3861 L12: -0.1058 REMARK 3 L13: -0.7942 L23: -0.9865 REMARK 3 S TENSOR REMARK 3 S11: -0.1030 S12: 0.0789 S13: 0.1561 REMARK 3 S21: 0.2099 S22: -0.0277 S23: -0.3475 REMARK 3 S31: -0.6362 S32: 0.0580 S33: 0.1799 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5526 -0.4051 35.5062 REMARK 3 T TENSOR REMARK 3 T11: 0.4227 T22: 0.7044 REMARK 3 T33: 0.6485 T12: -0.1435 REMARK 3 T13: -0.0623 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 3.2248 L22: 4.5292 REMARK 3 L33: 2.1361 L12: 0.5005 REMARK 3 L13: 0.0509 L23: -0.1324 REMARK 3 S TENSOR REMARK 3 S11: -0.1284 S12: 0.3257 S13: 0.4570 REMARK 3 S21: 0.1388 S22: 0.1672 S23: -1.0129 REMARK 3 S31: -0.4821 S32: 0.8200 S33: -0.0564 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7825 -1.9071 7.6595 REMARK 3 T TENSOR REMARK 3 T11: 0.5191 T22: 0.2944 REMARK 3 T33: 0.3646 T12: -0.0186 REMARK 3 T13: 0.0629 T23: -0.0743 REMARK 3 L TENSOR REMARK 3 L11: 0.7573 L22: 1.0095 REMARK 3 L33: 4.2522 L12: 0.3769 REMARK 3 L13: -0.7870 L23: -2.2223 REMARK 3 S TENSOR REMARK 3 S11: -0.0977 S12: 0.2169 S13: 0.0047 REMARK 3 S21: -0.2300 S22: 0.0655 S23: -0.2495 REMARK 3 S31: 0.2588 S32: -0.1497 S33: 0.0521 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3270 -3.5404 -4.7197 REMARK 3 T TENSOR REMARK 3 T11: 0.8488 T22: 0.4292 REMARK 3 T33: 0.5332 T12: 0.0419 REMARK 3 T13: 0.1389 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 5.1762 L22: 3.7383 REMARK 3 L33: 3.1769 L12: -0.0514 REMARK 3 L13: -0.5088 L23: 0.5127 REMARK 3 S TENSOR REMARK 3 S11: -0.4197 S12: 0.1638 S13: -0.6615 REMARK 3 S21: 0.2461 S22: 0.2736 S23: -0.5209 REMARK 3 S31: 0.7379 S32: 0.1551 S33: 0.1720 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS COLUMNS AND I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5DAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900, 0.97946, 0.97930, REMARK 200 0.95365 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : COOT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21817 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.329 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 43.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 200 AND I_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 400, 0.1 M HEPES PH 7.6, 0.2 M REMARK 280 CALCIUM CHLORIDE DIHYDRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.27100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.62400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.40600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.62400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.27100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.40600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 146 REMARK 465 LYS A 163 REMARK 465 GLY A 164 REMARK 465 LEU A 165 REMARK 465 PRO A 166 REMARK 465 ASN A 167 REMARK 465 GLY A 168 REMARK 465 VAL A 169 REMARK 465 ASN A 170 REMARK 465 HIS A 171 REMARK 465 ASP A 172 REMARK 465 ASP A 173 REMARK 465 LYS A 174 REMARK 465 LYS A 175 REMARK 465 GLY A 176 REMARK 465 ASN A 177 REMARK 465 LYS A 178 REMARK 465 ARG A 179 REMARK 465 ALA A 180 REMARK 465 LEU A 181 REMARK 465 PRO A 182 REMARK 465 GLU A 183 REMARK 465 GLU A 184 REMARK 465 ASP A 192 REMARK 465 ALA A 193 REMARK 465 GLN A 194 REMARK 465 HIS A 195 REMARK 465 LYS A 196 REMARK 465 GLU A 197 REMARK 465 ASP A 198 REMARK 465 ALA A 199 REMARK 465 GLY A 200 REMARK 465 ASP A 201 REMARK 465 GLU A 202 REMARK 465 ILE A 203 REMARK 465 ASN A 225 REMARK 465 GLU B 161 REMARK 465 GLY B 162 REMARK 465 LYS B 163 REMARK 465 GLY B 164 REMARK 465 LEU B 165 REMARK 465 PRO B 166 REMARK 465 ASN B 167 REMARK 465 GLY B 168 REMARK 465 VAL B 169 REMARK 465 ASN B 170 REMARK 465 HIS B 171 REMARK 465 ASP B 172 REMARK 465 ASP B 173 REMARK 465 LYS B 174 REMARK 465 LYS B 175 REMARK 465 GLY B 176 REMARK 465 ASN B 177 REMARK 465 LYS B 178 REMARK 465 ARG B 179 REMARK 465 ALA B 180 REMARK 465 LEU B 181 REMARK 465 PRO B 182 REMARK 465 GLU B 183 REMARK 465 GLU B 184 REMARK 465 GLN B 194 REMARK 465 HIS B 195 REMARK 465 LYS B 196 REMARK 465 GLU B 197 REMARK 465 ASP B 198 REMARK 465 ALA B 199 REMARK 465 GLY B 200 REMARK 465 ASP B 201 REMARK 465 GLU B 202 REMARK 465 ILE B 203 REMARK 465 HIS B 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 426 O HOH A 427 1.89 REMARK 500 O HOH B 415 O HOH B 446 1.94 REMARK 500 O HOH B 440 O HOH B 443 1.96 REMARK 500 O HOH A 406 O HOH A 445 1.98 REMARK 500 O HOH B 409 O HOH B 431 2.00 REMARK 500 OE1 GLU B 51 O HOH B 401 2.07 REMARK 500 OE2 GLU B 26 O HOH B 402 2.14 REMARK 500 O HOH B 439 O HOH B 445 2.16 REMARK 500 O HOH A 411 O HOH A 436 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 117 -63.41 72.21 REMARK 500 PHE A 144 107.92 -166.93 REMARK 500 ASP A 214 -73.07 -108.20 REMARK 500 ASP B 93 7.53 -69.89 REMARK 500 LYS B 158 71.41 -100.65 REMARK 500 ASP B 214 -71.59 -108.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 40 OD1 REMARK 620 2 HOH A 443 O 68.5 REMARK 620 3 ASP B 93 OD2 41.1 36.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 51 OE1 REMARK 620 2 HOH A 429 O 86.7 REMARK 620 3 HOH A 442 O 87.2 109.0 REMARK 620 4 HOH A 449 O 158.0 75.0 87.2 REMARK 620 5 HOH B 408 O 114.5 79.9 157.3 74.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 22 O REMARK 620 2 HOH B 427 O 76.3 REMARK 620 3 HOH B 441 O 87.2 86.2 REMARK 620 4 HOH B 444 O 97.1 86.6 170.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 DBREF 5DAY A 19 225 UNP Q9CA59 NRP1_ARATH 19 225 DBREF 5DAY B 19 225 UNP Q9CA59 NRP1_ARATH 19 225 SEQADV 5DAY SER A 18 UNP Q9CA59 EXPRESSION TAG SEQADV 5DAY SER B 18 UNP Q9CA59 EXPRESSION TAG SEQRES 1 A 208 SER ASN LEU GLU GLN ILE ASP ALA GLU LEU VAL LEU SER SEQRES 2 A 208 ILE GLU LYS LEU GLN GLU ILE GLN ASP ASP LEU GLU LYS SEQRES 3 A 208 ILE ASN GLU LYS ALA SER ASP GLU VAL LEU GLU VAL GLU SEQRES 4 A 208 GLN LYS TYR ASN VAL ILE ARG LYS PRO VAL TYR ASP LYS SEQRES 5 A 208 ARG ASN GLU VAL ILE GLN SER ILE PRO GLY PHE TRP MET SEQRES 6 A 208 THR ALA PHE LEU SER HIS PRO ALA LEU GLY ASP LEU LEU SEQRES 7 A 208 THR GLU GLU ASP GLN LYS ILE PHE LYS TYR LEU ASN SER SEQRES 8 A 208 LEU GLU VAL GLU ASP ALA LYS ASP VAL LYS SER GLY TYR SEQRES 9 A 208 SER ILE THR PHE HIS PHE THR SER ASN PRO PHE PHE GLU SEQRES 10 A 208 ASP ALA LYS LEU THR LYS THR PHE THR PHE LEU GLU GLU SEQRES 11 A 208 GLY THR THR LYS ILE THR ALA THR PRO ILE LYS TRP LYS SEQRES 12 A 208 GLU GLY LYS GLY LEU PRO ASN GLY VAL ASN HIS ASP ASP SEQRES 13 A 208 LYS LYS GLY ASN LYS ARG ALA LEU PRO GLU GLU SER PHE SEQRES 14 A 208 PHE THR TRP PHE THR ASP ALA GLN HIS LYS GLU ASP ALA SEQRES 15 A 208 GLY ASP GLU ILE HIS ASP GLU VAL ALA ASP ILE ILE LYS SEQRES 16 A 208 GLU ASP LEU TRP SER ASN PRO LEU THR TYR PHE ASN ASN SEQRES 1 B 208 SER ASN LEU GLU GLN ILE ASP ALA GLU LEU VAL LEU SER SEQRES 2 B 208 ILE GLU LYS LEU GLN GLU ILE GLN ASP ASP LEU GLU LYS SEQRES 3 B 208 ILE ASN GLU LYS ALA SER ASP GLU VAL LEU GLU VAL GLU SEQRES 4 B 208 GLN LYS TYR ASN VAL ILE ARG LYS PRO VAL TYR ASP LYS SEQRES 5 B 208 ARG ASN GLU VAL ILE GLN SER ILE PRO GLY PHE TRP MET SEQRES 6 B 208 THR ALA PHE LEU SER HIS PRO ALA LEU GLY ASP LEU LEU SEQRES 7 B 208 THR GLU GLU ASP GLN LYS ILE PHE LYS TYR LEU ASN SER SEQRES 8 B 208 LEU GLU VAL GLU ASP ALA LYS ASP VAL LYS SER GLY TYR SEQRES 9 B 208 SER ILE THR PHE HIS PHE THR SER ASN PRO PHE PHE GLU SEQRES 10 B 208 ASP ALA LYS LEU THR LYS THR PHE THR PHE LEU GLU GLU SEQRES 11 B 208 GLY THR THR LYS ILE THR ALA THR PRO ILE LYS TRP LYS SEQRES 12 B 208 GLU GLY LYS GLY LEU PRO ASN GLY VAL ASN HIS ASP ASP SEQRES 13 B 208 LYS LYS GLY ASN LYS ARG ALA LEU PRO GLU GLU SER PHE SEQRES 14 B 208 PHE THR TRP PHE THR ASP ALA GLN HIS LYS GLU ASP ALA SEQRES 15 B 208 GLY ASP GLU ILE HIS ASP GLU VAL ALA ASP ILE ILE LYS SEQRES 16 B 208 GLU ASP LEU TRP SER ASN PRO LEU THR TYR PHE ASN ASN HET CA A 301 1 HET CA A 302 1 HET CA B 301 1 HETNAM CA CALCIUM ION FORMUL 3 CA 3(CA 2+) FORMUL 6 HOH *101(H2 O) HELIX 1 AA1 SER A 18 GLN A 75 1 58 HELIX 2 AA2 GLY A 79 HIS A 88 1 10 HELIX 3 AA3 HIS A 88 ASP A 93 1 6 HELIX 4 AA4 THR A 96 LYS A 104 1 9 HELIX 5 AA5 SER A 185 PHE A 190 5 6 HELIX 6 AA6 ASP A 205 ASP A 214 1 10 HELIX 7 AA7 PRO A 219 ASN A 224 1 6 HELIX 8 AA8 ASN B 19 ILE B 23 5 5 HELIX 9 AA9 ASP B 24 GLN B 75 1 52 HELIX 10 AB1 GLY B 79 HIS B 88 1 10 HELIX 11 AB2 HIS B 88 ASP B 93 1 6 HELIX 12 AB3 THR B 96 LYS B 104 1 9 HELIX 13 AB4 ASP B 116 LYS B 118 5 3 HELIX 14 AB5 SER B 185 PHE B 190 5 6 HELIX 15 AB6 GLU B 206 ASP B 214 1 9 HELIX 16 AB7 PRO B 219 ASN B 225 1 7 SHEET 1 AA1 4 LEU A 106 ASP A 113 0 SHEET 2 AA1 4 GLY A 120 PHE A 127 -1 O HIS A 126 N SER A 108 SHEET 3 AA1 4 LYS A 137 THR A 143 -1 O LEU A 138 N PHE A 125 SHEET 4 AA1 4 LYS A 151 ALA A 154 -1 O LYS A 151 N THR A 143 SHEET 1 AA2 4 LEU B 106 ASP B 113 0 SHEET 2 AA2 4 GLY B 120 PHE B 127 -1 O HIS B 126 N SER B 108 SHEET 3 AA2 4 LYS B 137 THR B 143 -1 O PHE B 142 N TYR B 121 SHEET 4 AA2 4 LYS B 151 ALA B 154 -1 O LYS B 151 N THR B 143 LINK OD1 ASP A 40 CA CA A 301 1555 1555 3.16 LINK OE1 GLU A 51 CA CA A 302 1555 1555 2.48 LINK CA CA A 301 O HOH A 443 1555 1555 2.54 LINK CA CA A 301 OD2 ASP B 93 4555 1555 2.38 LINK CA CA A 302 O HOH A 429 1555 1555 2.88 LINK CA CA A 302 O HOH A 442 1555 1555 2.11 LINK CA CA A 302 O HOH A 449 1555 1555 2.27 LINK CA CA A 302 O HOH B 408 1555 3555 2.49 LINK O GLN B 22 CA CA B 301 1555 1555 2.36 LINK CA CA B 301 O HOH B 427 1555 1555 2.20 LINK CA CA B 301 O HOH B 441 1555 1555 2.29 LINK CA CA B 301 O HOH B 444 1555 1555 2.24 SITE 1 AC1 4 ASP A 40 HOH A 443 PRO B 89 ASP B 93 SITE 1 AC2 5 GLU A 51 HOH A 429 HOH A 442 HOH A 449 SITE 2 AC2 5 HOH B 408 SITE 1 AC3 4 GLN B 22 HOH B 427 HOH B 441 HOH B 444 CRYST1 60.542 60.812 135.248 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016517 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007394 0.00000