HEADER TRANSFERASE 20-AUG-15 5DAZ TITLE CRYSTAL STRUCTURE OF SCABIN, A MONO-ADP-RIBOSYLTRANSFERASE FROM TITLE 2 STREPTOMYCES SCABIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCABIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MONO-ADP-RIBOSYLTRANSFERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SCABIEI 87.22; SOURCE 3 ORGANISM_TAXID: 680198; SOURCE 4 STRAIN: 87.22; SOURCE 5 CELL_LINE: K12; SOURCE 6 GENE: SCAB_27771; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS MONO-ADP-RIBOSYLTRANSFERASE, APO-ENZYME, NAD-BINDING PROTEIN, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.DUTTA,J.LANOUE,A.R.MERRILL REVDAT 6 27-SEP-23 5DAZ 1 REMARK REVDAT 5 08-JAN-20 5DAZ 1 REMARK REVDAT 4 22-NOV-17 5DAZ 1 JRNL REMARK REVDAT 3 08-JUN-16 5DAZ 1 JRNL REVDAT 2 06-APR-16 5DAZ 1 JRNL REVDAT 1 23-MAR-16 5DAZ 0 JRNL AUTH B.LYONS,R.RAVULAPALLI,J.LANOUE,M.R.LUGO,D.DUTTA,S.CARLIN, JRNL AUTH 2 A.R.MERRILL JRNL TITL SCABIN, A NOVEL DNA-ACTING ADP-RIBOSYLTRANSFERASE FROM JRNL TITL 2 STREPTOMYCES SCABIES. JRNL REF J.BIOL.CHEM. V. 291 11198 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27002155 JRNL DOI 10.1074/JBC.M115.707653 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 31437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1655 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1743 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1313 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 177 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.627 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1362 ; 0.033 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1210 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1869 ; 2.810 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2800 ; 1.366 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 169 ; 8.317 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;34.384 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 194 ;13.359 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;19.897 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 195 ; 0.166 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1562 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 313 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 667 ; 2.346 ; 1.904 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 666 ; 2.335 ; 1.904 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 833 ; 3.538 ; 2.851 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9723 33.3968 14.1485 REMARK 3 T TENSOR REMARK 3 T11: 0.0048 T22: 0.0583 REMARK 3 T33: 0.0078 T12: 0.0073 REMARK 3 T13: 0.0061 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.5839 L22: 0.8264 REMARK 3 L33: 0.7187 L12: -0.5704 REMARK 3 L13: -0.4941 L23: -0.1107 REMARK 3 S TENSOR REMARK 3 S11: 0.0431 S12: 0.2110 S13: 0.0634 REMARK 3 S21: 0.0105 S22: -0.0173 S23: 0.0095 REMARK 3 S31: -0.0183 S32: -0.1955 S33: -0.0258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5DAZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 - 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33118 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 43.273 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.76400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2CB4 REMARK 200 REMARK 200 REMARK: LARGE MULTI-FACETED CRYSTALS, 300 UM X 300 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, PH 6.5, 15% PEG400, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.89350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.53750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.89350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.53750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 385 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 GLY A 18 REMARK 465 GLU A 19 REMARK 465 ASN A 20 REMARK 465 LEU A 21 REMARK 465 TYR A 22 REMARK 465 PHE A 23 REMARK 465 GLN A 24 REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 HIS A 27 REMARK 465 MET A 28 REMARK 465 THR A 29 REMARK 465 ALA A 30 REMARK 465 THR A 31 REMARK 465 ALA A 32 REMARK 465 THR A 33 REMARK 465 SER A 34 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 129 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 130 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 130 O HOH A 301 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 42 N CYS A 42 CA 0.126 REMARK 500 ASP A 46 CA ASP A 46 CB -0.146 REMARK 500 TRP A 128 CB TRP A 128 CG 0.122 REMARK 500 TRP A 128 CE3 TRP A 128 CZ3 0.109 REMARK 500 GLY A 132 N GLY A 132 CA -0.091 REMARK 500 VAL A 191 CB VAL A 191 CG2 -0.170 REMARK 500 TYR A 196 CE1 TYR A 196 CZ -0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 46 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 47 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG A 77 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 ASP A 79 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 79 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 GLN A 89 CB - CA - C ANGL. DEV. = -12.0 DEGREES REMARK 500 ASP A 95 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 TYR A 106 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 123 CB - CG - OD1 ANGL. DEV. = 11.2 DEGREES REMARK 500 ASP A 123 CB - CG - OD2 ANGL. DEV. = -8.6 DEGREES REMARK 500 TRP A 128 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 LYS A 130 C - N - CA ANGL. DEV. = -17.6 DEGREES REMARK 500 ASP A 138 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 64 -174.33 -66.93 REMARK 500 CYS A 72 28.30 -142.23 REMARK 500 ASP A 95 99.91 -160.65 REMARK 500 ASN A 110 93.86 54.25 REMARK 500 TYR A 129 -89.92 -40.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 131 GLY A 132 138.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 5DAZ A 29 200 UNP C9Z6T8 C9Z6T8_STRSW 29 200 SEQADV 5DAZ MET A 6 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ GLY A 7 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ SER A 8 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ SER A 9 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ HIS A 10 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ HIS A 11 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ HIS A 12 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ HIS A 13 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ HIS A 14 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ HIS A 15 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ SER A 16 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ SER A 17 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ GLY A 18 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ GLU A 19 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ ASN A 20 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ LEU A 21 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ TYR A 22 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ PHE A 23 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ GLN A 24 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ GLY A 25 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ SER A 26 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ HIS A 27 UNP C9Z6T8 EXPRESSION TAG SEQADV 5DAZ MET A 28 UNP C9Z6T8 EXPRESSION TAG SEQRES 1 A 195 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 195 GLU ASN LEU TYR PHE GLN GLY SER HIS MET THR ALA THR SEQRES 3 A 195 ALA THR SER ALA LYS ALA ALA ALA PRO ALA CYS PRO ARG SEQRES 4 A 195 PHE ASP ASP PRO VAL HIS ALA ALA ALA ASP PRO ARG VAL SEQRES 5 A 195 ASP VAL GLU ARG ILE THR PRO ASP PRO VAL TRP ARG THR SEQRES 6 A 195 THR CYS GLY THR LEU TYR ARG SER ASP SER ARG GLY PRO SEQRES 7 A 195 ALA VAL VAL PHE GLU GLN GLY PHE LEU PRO LYS ASP VAL SEQRES 8 A 195 ILE ASP GLY GLN TYR ASP ILE GLU SER TYR VAL LEU VAL SEQRES 9 A 195 ASN GLN PRO SER PRO TYR VAL SER THR THR TYR ASP HIS SEQRES 10 A 195 ASP LEU TYR LYS THR TRP TYR LYS SER GLY TYR ASN TYR SEQRES 11 A 195 TYR ILE ASP ALA PRO GLY GLY VAL ASP VAL ASN LYS THR SEQRES 12 A 195 ILE GLY ASP ARG HIS LYS TRP ALA ASP GLN VAL GLU VAL SEQRES 13 A 195 ALA PHE PRO GLY GLY ILE ARG THR GLU PHE VAL ILE GLY SEQRES 14 A 195 VAL CYS PRO VAL ASP LYS LYS THR ARG THR GLU LYS MET SEQRES 15 A 195 SER GLU CYS VAL GLY ASN PRO HIS TYR GLU PRO TRP HIS FORMUL 2 HOH *177(H2 O) HELIX 1 AA1 ASP A 58 ILE A 62 5 5 HELIX 2 AA2 GLY A 82 GLY A 90 1 9 HELIX 3 AA3 ASP A 102 ASN A 110 1 9 HELIX 4 AA4 ASP A 123 TRP A 128 5 6 HELIX 5 AA5 VAL A 145 GLY A 150 1 6 HELIX 6 AA6 TRP A 155 GLN A 158 5 4 HELIX 7 AA7 ARG A 168 GLU A 170 5 3 HELIX 8 AA8 MET A 187 CYS A 190 5 4 SHEET 1 AA1 4 LEU A 75 ASP A 79 0 SHEET 2 AA1 4 TYR A 133 ILE A 137 -1 O ILE A 137 N LEU A 75 SHEET 3 AA1 4 VAL A 172 ASP A 179 -1 O CYS A 176 N ASN A 134 SHEET 4 AA1 4 THR A 184 GLU A 185 -1 O THR A 184 N ASP A 179 SHEET 1 AA2 4 LEU A 75 ASP A 79 0 SHEET 2 AA2 4 TYR A 133 ILE A 137 -1 O ILE A 137 N LEU A 75 SHEET 3 AA2 4 VAL A 172 ASP A 179 -1 O CYS A 176 N ASN A 134 SHEET 4 AA2 4 VAL A 191 GLY A 192 -1 O VAL A 191 N VAL A 175 SHEET 1 AA3 3 TYR A 115 THR A 119 0 SHEET 2 AA3 3 GLU A 160 PRO A 164 -1 O PHE A 163 N VAL A 116 SHEET 3 AA3 3 VAL A 143 ASP A 144 -1 N VAL A 143 O ALA A 162 SSBOND 1 CYS A 42 CYS A 72 1555 1555 2.08 SSBOND 2 CYS A 176 CYS A 190 1555 1555 2.02 CISPEP 1 ALA A 35 LYS A 36 0 17.39 CISPEP 2 THR A 63 PRO A 64 0 -16.48 CRYST1 87.787 61.075 37.812 90.00 99.64 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011391 0.000000 0.001936 0.00000 SCALE2 0.000000 0.016373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026826 0.00000