HEADER HYDROLASE 23-AUG-15 5DC6 TITLE CRYSTAL STRUCTURE OF D176N-Y306F HDAC8 IN COMPLEX WITH A TETRAPEPTIDE TITLE 2 SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE 8; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HD8; COMPND 5 EC: 3.5.1.98; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: FLUOR-DE-LYS TETRAPEPTIDE ASSAY SUBSTRATE; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDAC8, HDACL1, CDA07; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHD2-XA-HIS; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS HISTONE DEACETYLASE 8, ARGINASE FOLD, DEACETYLASE, ENZYME-SUBSTRATE KEYWDS 2 COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.DECROOS,M.S.LEE,D.W.CHRISTIANSON REVDAT 6 15-NOV-23 5DC6 1 LINK REVDAT 5 27-SEP-23 5DC6 1 LINK REVDAT 4 25-DEC-19 5DC6 1 REMARK REVDAT 3 13-SEP-17 5DC6 1 JRNL REMARK REVDAT 2 17-FEB-16 5DC6 1 JRNL REVDAT 1 03-FEB-16 5DC6 0 JRNL AUTH S.M.GANTT,C.DECROOS,M.S.LEE,L.E.GULLETT,C.M.BOWMAN, JRNL AUTH 2 D.W.CHRISTIANSON,C.A.FIERKE JRNL TITL GENERAL BASE-GENERAL ACID CATALYSIS IN HUMAN HISTONE JRNL TITL 2 DEACETYLASE 8. JRNL REF BIOCHEMISTRY V. 55 820 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 26806311 JRNL DOI 10.1021/ACS.BIOCHEM.5B01327 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1833 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 121931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 6116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1276 - 4.8228 1.00 4145 217 0.1520 0.1573 REMARK 3 2 4.8228 - 3.8284 1.00 3986 203 0.1211 0.1193 REMARK 3 3 3.8284 - 3.3446 1.00 3953 208 0.1338 0.1392 REMARK 3 4 3.3446 - 3.0389 1.00 3887 229 0.1425 0.1739 REMARK 3 5 3.0389 - 2.8211 1.00 3913 199 0.1472 0.1818 REMARK 3 6 2.8211 - 2.6548 1.00 3872 219 0.1455 0.1533 REMARK 3 7 2.6548 - 2.5218 1.00 3902 201 0.1473 0.1752 REMARK 3 8 2.5218 - 2.4121 1.00 3868 218 0.1435 0.1837 REMARK 3 9 2.4121 - 2.3192 1.00 3877 202 0.1425 0.1639 REMARK 3 10 2.3192 - 2.2392 1.00 3859 204 0.1407 0.1745 REMARK 3 11 2.2392 - 2.1692 1.00 3886 188 0.1376 0.1601 REMARK 3 12 2.1692 - 2.1072 1.00 3874 195 0.1385 0.1577 REMARK 3 13 2.1072 - 2.0517 1.00 3848 211 0.1437 0.1930 REMARK 3 14 2.0517 - 2.0016 1.00 3834 200 0.1445 0.1615 REMARK 3 15 2.0016 - 1.9561 1.00 3860 203 0.1487 0.1824 REMARK 3 16 1.9561 - 1.9145 1.00 3845 186 0.1440 0.1654 REMARK 3 17 1.9145 - 1.8762 1.00 3856 210 0.1402 0.1700 REMARK 3 18 1.8762 - 1.8408 1.00 3831 217 0.1442 0.1855 REMARK 3 19 1.8408 - 1.8079 1.00 3826 184 0.1518 0.1621 REMARK 3 20 1.8079 - 1.7773 1.00 3828 224 0.1534 0.1725 REMARK 3 21 1.7773 - 1.7486 1.00 3826 204 0.1618 0.1852 REMARK 3 22 1.7486 - 1.7217 1.00 3854 194 0.1736 0.2039 REMARK 3 23 1.7217 - 1.6964 1.00 3883 174 0.1814 0.2307 REMARK 3 24 1.6964 - 1.6725 1.00 3838 203 0.1916 0.2203 REMARK 3 25 1.6725 - 1.6499 1.00 3793 225 0.1919 0.2361 REMARK 3 26 1.6499 - 1.6284 1.00 3822 207 0.2006 0.2342 REMARK 3 27 1.6284 - 1.6081 1.00 3799 208 0.2100 0.2331 REMARK 3 28 1.6081 - 1.5887 1.00 3817 210 0.2192 0.2138 REMARK 3 29 1.5887 - 1.5702 1.00 3822 207 0.2337 0.2519 REMARK 3 30 1.5702 - 1.5530 0.93 3611 166 0.2403 0.2677 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6400 REMARK 3 ANGLE : 1.246 8743 REMARK 3 CHIRALITY : 0.059 931 REMARK 3 PLANARITY : 0.007 1153 REMARK 3 DIHEDRAL : 12.733 2339 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1845 -2.1915 -9.0896 REMARK 3 T TENSOR REMARK 3 T11: 0.2361 T22: 0.2235 REMARK 3 T33: 0.1979 T12: -0.0088 REMARK 3 T13: 0.0413 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.1274 L22: 2.0730 REMARK 3 L33: 1.0674 L12: 0.0591 REMARK 3 L13: -0.2525 L23: 0.4641 REMARK 3 S TENSOR REMARK 3 S11: 0.0505 S12: 0.2089 S13: 0.0741 REMARK 3 S21: -0.2752 S22: -0.0213 S23: -0.2125 REMARK 3 S31: -0.1482 S32: 0.0858 S33: -0.0327 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7280 -15.6511 -7.0142 REMARK 3 T TENSOR REMARK 3 T11: 0.1576 T22: 0.1599 REMARK 3 T33: 0.1410 T12: 0.0112 REMARK 3 T13: 0.0042 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.8292 L22: 1.4538 REMARK 3 L33: 1.7399 L12: -0.3781 REMARK 3 L13: -0.5881 L23: 0.4710 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: 0.2544 S13: -0.1402 REMARK 3 S21: -0.1308 S22: -0.1156 S23: 0.0998 REMARK 3 S31: 0.0497 S32: -0.1975 S33: 0.0983 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7489 -19.3301 9.2334 REMARK 3 T TENSOR REMARK 3 T11: 0.1574 T22: 0.1448 REMARK 3 T33: 0.1754 T12: 0.0067 REMARK 3 T13: -0.0010 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.2758 L22: 1.3850 REMARK 3 L33: 1.2981 L12: -0.8547 REMARK 3 L13: -0.1369 L23: 0.3930 REMARK 3 S TENSOR REMARK 3 S11: -0.0578 S12: -0.0775 S13: -0.1386 REMARK 3 S21: 0.1127 S22: 0.0636 S23: 0.0036 REMARK 3 S31: 0.1731 S32: 0.0507 S33: -0.0117 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7693 -2.8888 9.5266 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.1784 REMARK 3 T33: 0.1838 T12: -0.0092 REMARK 3 T13: -0.0212 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.6742 L22: 1.4343 REMARK 3 L33: 0.7885 L12: -0.1889 REMARK 3 L13: -0.0131 L23: -0.0450 REMARK 3 S TENSOR REMARK 3 S11: -0.0339 S12: -0.0835 S13: 0.0647 REMARK 3 S21: 0.1181 S22: 0.0309 S23: -0.2015 REMARK 3 S31: -0.0708 S32: 0.1340 S33: 0.0101 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 337 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7985 -1.0564 17.6555 REMARK 3 T TENSOR REMARK 3 T11: 0.2210 T22: 0.2125 REMARK 3 T33: 0.1542 T12: -0.0114 REMARK 3 T13: -0.0351 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.9980 L22: 1.8829 REMARK 3 L33: 1.7058 L12: -0.1410 REMARK 3 L13: -0.2376 L23: -0.6784 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: -0.2433 S13: 0.0938 REMARK 3 S21: 0.3987 S22: 0.1134 S23: -0.0044 REMARK 3 S31: -0.0886 S32: 0.0442 S33: -0.0750 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.9110 0.8384 -6.5714 REMARK 3 T TENSOR REMARK 3 T11: 0.2189 T22: 0.2229 REMARK 3 T33: 0.1911 T12: 0.0085 REMARK 3 T13: -0.0329 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.4638 L22: 2.3669 REMARK 3 L33: 1.5799 L12: -0.2683 REMARK 3 L13: 0.2084 L23: -0.0098 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: 0.1736 S13: -0.1031 REMARK 3 S21: -0.2456 S22: 0.0115 S23: 0.1742 REMARK 3 S31: 0.1076 S32: 0.0860 S33: -0.0084 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.1072 -2.2093 -3.2999 REMARK 3 T TENSOR REMARK 3 T11: 0.1951 T22: 0.2384 REMARK 3 T33: 0.2576 T12: -0.0048 REMARK 3 T13: -0.0582 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.1662 L22: 1.0848 REMARK 3 L33: 0.6938 L12: 0.9434 REMARK 3 L13: -0.4257 L23: -0.0712 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: 0.1522 S13: -0.0309 REMARK 3 S21: -0.1995 S22: 0.0764 S23: 0.3759 REMARK 3 S31: 0.0458 S32: -0.1822 S33: -0.0630 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2987 18.3800 -12.3955 REMARK 3 T TENSOR REMARK 3 T11: 0.3142 T22: 0.2808 REMARK 3 T33: 0.2126 T12: 0.0110 REMARK 3 T13: -0.0193 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 2.2073 L22: 2.7796 REMARK 3 L33: 2.0065 L12: 0.1849 REMARK 3 L13: -0.2487 L23: 0.2422 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: 0.5480 S13: 0.1021 REMARK 3 S21: -0.4789 S22: -0.0876 S23: 0.0540 REMARK 3 S31: -0.2525 S32: -0.1189 S33: 0.0230 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.0022 11.8235 -8.2006 REMARK 3 T TENSOR REMARK 3 T11: 0.2504 T22: 0.1877 REMARK 3 T33: 0.1593 T12: 0.0080 REMARK 3 T13: -0.0217 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 2.2075 L22: 1.3669 REMARK 3 L33: 1.4991 L12: -0.1723 REMARK 3 L13: 0.6901 L23: -0.3247 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: 0.3656 S13: -0.0111 REMARK 3 S21: -0.1990 S22: -0.0461 S23: -0.0416 REMARK 3 S31: -0.0715 S32: 0.1549 S33: 0.0448 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 128 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.8936 11.4875 -0.1226 REMARK 3 T TENSOR REMARK 3 T11: 0.1888 T22: 0.1582 REMARK 3 T33: 0.1707 T12: 0.0309 REMARK 3 T13: -0.0186 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.2903 L22: 1.5338 REMARK 3 L33: 1.2775 L12: -0.2213 REMARK 3 L13: -0.1066 L23: -0.1270 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: 0.0580 S13: 0.0825 REMARK 3 S21: 0.0113 S22: 0.0035 S23: 0.1206 REMARK 3 S31: -0.1462 S32: -0.1004 S33: 0.0359 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 157 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.4971 20.0134 3.4499 REMARK 3 T TENSOR REMARK 3 T11: 0.2337 T22: 0.1709 REMARK 3 T33: 0.2422 T12: 0.0540 REMARK 3 T13: -0.0193 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.2545 L22: 1.7217 REMARK 3 L33: 2.3915 L12: -0.3802 REMARK 3 L13: 0.2811 L23: -0.4108 REMARK 3 S TENSOR REMARK 3 S11: -0.0981 S12: 0.0330 S13: 0.1383 REMARK 3 S21: -0.0483 S22: 0.0068 S23: 0.2072 REMARK 3 S31: -0.3438 S32: -0.1553 S33: 0.0341 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 177 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7006 17.6267 10.4444 REMARK 3 T TENSOR REMARK 3 T11: 0.1962 T22: 0.1584 REMARK 3 T33: 0.1812 T12: 0.0241 REMARK 3 T13: -0.0141 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.9366 L22: 2.6254 REMARK 3 L33: 1.0408 L12: -1.0555 REMARK 3 L13: 0.2398 L23: -0.4084 REMARK 3 S TENSOR REMARK 3 S11: -0.1575 S12: -0.0036 S13: 0.0865 REMARK 3 S21: 0.0912 S22: 0.0827 S23: 0.0149 REMARK 3 S31: -0.2437 S32: -0.0419 S33: 0.0541 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 203 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6871 20.4766 15.0984 REMARK 3 T TENSOR REMARK 3 T11: 0.2664 T22: 0.1740 REMARK 3 T33: 0.1866 T12: 0.0001 REMARK 3 T13: -0.0308 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.4947 L22: 1.8555 REMARK 3 L33: 1.3261 L12: -0.9690 REMARK 3 L13: -0.0384 L23: 0.1349 REMARK 3 S TENSOR REMARK 3 S11: -0.1056 S12: -0.1393 S13: 0.2985 REMARK 3 S21: 0.0801 S22: 0.1096 S23: -0.1286 REMARK 3 S31: -0.3798 S32: 0.0304 S33: 0.0485 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 226 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.2667 10.5418 21.5830 REMARK 3 T TENSOR REMARK 3 T11: 0.2682 T22: 0.2283 REMARK 3 T33: 0.1769 T12: 0.0534 REMARK 3 T13: 0.0416 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.0532 L22: 2.5357 REMARK 3 L33: 1.2009 L12: -0.8787 REMARK 3 L13: 0.2613 L23: -0.4269 REMARK 3 S TENSOR REMARK 3 S11: -0.0826 S12: -0.1372 S13: -0.0320 REMARK 3 S21: 0.3253 S22: 0.0591 S23: 0.2063 REMARK 3 S31: -0.1178 S32: -0.1241 S33: 0.0262 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 256 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.4848 4.9602 12.2256 REMARK 3 T TENSOR REMARK 3 T11: 0.1703 T22: 0.1840 REMARK 3 T33: 0.2039 T12: 0.0157 REMARK 3 T13: 0.0303 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.9909 L22: 1.1896 REMARK 3 L33: 1.0512 L12: -0.3632 REMARK 3 L13: -0.0012 L23: 0.0495 REMARK 3 S TENSOR REMARK 3 S11: -0.0698 S12: -0.1291 S13: 0.0090 REMARK 3 S21: 0.1318 S22: 0.0646 S23: 0.1749 REMARK 3 S31: -0.0407 S32: -0.1350 S33: 0.0311 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 308 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.5414 -8.3925 6.2010 REMARK 3 T TENSOR REMARK 3 T11: 0.1678 T22: 0.1885 REMARK 3 T33: 0.2141 T12: -0.0196 REMARK 3 T13: 0.0101 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.3209 L22: 2.5206 REMARK 3 L33: 1.6191 L12: -0.2116 REMARK 3 L13: 0.3062 L23: 0.5333 REMARK 3 S TENSOR REMARK 3 S11: -0.0390 S12: -0.0441 S13: -0.0779 REMARK 3 S21: 0.0716 S22: 0.0017 S23: 0.3734 REMARK 3 S31: 0.1640 S32: -0.2255 S33: 0.0223 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 337 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.4200 3.0820 21.1073 REMARK 3 T TENSOR REMARK 3 T11: 0.1910 T22: 0.2117 REMARK 3 T33: 0.1513 T12: 0.0134 REMARK 3 T13: 0.0199 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.7805 L22: 2.0516 REMARK 3 L33: 1.7931 L12: 0.1418 REMARK 3 L13: 0.3108 L23: 0.7753 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: -0.1483 S13: -0.0067 REMARK 3 S21: 0.2682 S22: 0.1035 S23: -0.0596 REMARK 3 S31: -0.0783 S32: -0.0068 S33: -0.0425 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DC6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000212994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 122036 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 49.103 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.03900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EWF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS (PH 8.0), 13% (W/V) PEG REMARK 280 8000, AND 4 MM TCEP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.16600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.14050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.10300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.14050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.16600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.10300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 ASP A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 GLN A 12 REMARK 465 SER A 13 REMARK 465 VAL A 377 REMARK 465 ILE A 378 REMARK 465 GLU A 379 REMARK 465 GLY A 380 REMARK 465 ARG A 381 REMARK 465 GLY A 382 REMARK 465 SER A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 PRO B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 PRO B 7 REMARK 465 ALA B 8 REMARK 465 ASP B 9 REMARK 465 SER B 10 REMARK 465 GLY B 11 REMARK 465 GLN B 12 REMARK 465 SER B 13 REMARK 465 ILE B 378 REMARK 465 GLU B 379 REMARK 465 GLY B 380 REMARK 465 ARG B 381 REMARK 465 GLY B 382 REMARK 465 SER B 383 REMARK 465 HIS B 384 REMARK 465 HIS B 385 REMARK 465 HIS B 386 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 14 CG CD1 CD2 REMARK 470 LYS A 36 CD CE NZ REMARK 470 LYS A 60 CD CE NZ REMARK 470 GLU A 85 CD OE1 OE2 REMARK 470 ASP A 89 CG OD1 OD2 REMARK 470 LYS A 221 CE NZ REMARK 470 LYS A 374 CD CE NZ REMARK 470 LEU B 14 CG CD1 CD2 REMARK 470 LYS B 52 CD CE NZ REMARK 470 ARG B 55 CZ NH1 NH2 REMARK 470 LYS B 60 CD CE NZ REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 GLU B 238 CD OE1 OE2 REMARK 470 LYS B 370 CD CE NZ REMARK 470 LYS B 374 CD CE NZ REMARK 470 VAL B 377 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 34 49.59 -140.04 REMARK 500 LYS A 36 -3.27 73.09 REMARK 500 ASP A 88 41.23 -99.33 REMARK 500 ASP A 89 74.72 -162.86 REMARK 500 TYR A 224 1.73 81.47 REMARK 500 LEU A 264 51.20 -117.17 REMARK 500 SER A 276 -72.63 -110.85 REMARK 500 SER A 276 -72.63 -109.05 REMARK 500 HIS A 334 -177.56 -170.72 REMARK 500 ILE B 34 49.20 -142.54 REMARK 500 ILE B 34 49.20 -143.42 REMARK 500 LYS B 36 -0.04 69.22 REMARK 500 TYR B 224 4.46 81.02 REMARK 500 LEU B 264 50.81 -116.74 REMARK 500 SER B 276 -75.06 -113.46 REMARK 500 SER B 276 -79.03 -109.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 178 OD2 REMARK 620 2 HIS A 180 ND1 106.4 REMARK 620 3 ASP A 267 OD2 117.6 101.6 REMARK 620 4 ALY C 5 OH 124.0 108.0 96.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 189 O REMARK 620 2 THR A 192 O 76.8 REMARK 620 3 VAL A 195 O 117.7 84.5 REMARK 620 4 TYR A 225 O 156.6 120.5 81.7 REMARK 620 5 HOH A 582 O 87.5 94.1 153.5 76.2 REMARK 620 6 HOH A 690 O 72.8 149.2 114.1 87.7 79.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 178 OD2 REMARK 620 2 HIS B 180 ND1 106.7 REMARK 620 3 ASP B 267 OD2 116.3 102.2 REMARK 620 4 HOH B 510 O 64.1 93.9 162.6 REMARK 620 5 ALY D 5 OH 126.0 106.5 96.5 72.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 189 O REMARK 620 2 THR B 192 O 79.7 REMARK 620 3 VAL B 195 O 114.7 81.3 REMARK 620 4 TYR B 225 O 158.0 117.7 82.9 REMARK 620 5 HOH B 569 O 88.8 95.4 154.9 76.7 REMARK 620 6 HOH B 663 O 72.3 151.5 114.7 88.7 79.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DC5 RELATED DB: PDB REMARK 900 RELATED ID: 5DC7 RELATED DB: PDB REMARK 900 RELATED ID: 5DC8 RELATED DB: PDB DBREF 5DC6 A 1 377 UNP Q9BY41 HDAC8_HUMAN 1 377 DBREF 5DC6 B 1 377 UNP Q9BY41 HDAC8_HUMAN 1 377 DBREF 5DC6 C 1 6 PDB 5DC6 5DC6 1 6 DBREF 5DC6 D 1 6 PDB 5DC6 5DC6 1 6 SEQADV 5DC6 ASN A 176 UNP Q9BY41 ASP 176 ENGINEERED MUTATION SEQADV 5DC6 PHE A 306 UNP Q9BY41 TYR 306 ENGINEERED MUTATION SEQADV 5DC6 ILE A 378 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 GLU A 379 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 GLY A 380 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 ARG A 381 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 GLY A 382 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 SER A 383 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 HIS A 384 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 HIS A 385 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 HIS A 386 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 HIS A 387 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 HIS A 388 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 HIS A 389 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 ASN B 176 UNP Q9BY41 ASP 176 ENGINEERED MUTATION SEQADV 5DC6 PHE B 306 UNP Q9BY41 TYR 306 ENGINEERED MUTATION SEQADV 5DC6 ILE B 378 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 GLU B 379 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 GLY B 380 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 ARG B 381 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 GLY B 382 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 SER B 383 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 HIS B 384 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 HIS B 385 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 HIS B 386 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 HIS B 387 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 HIS B 388 UNP Q9BY41 EXPRESSION TAG SEQADV 5DC6 HIS B 389 UNP Q9BY41 EXPRESSION TAG SEQRES 1 A 389 MET GLU GLU PRO GLU GLU PRO ALA ASP SER GLY GLN SER SEQRES 2 A 389 LEU VAL PRO VAL TYR ILE TYR SER PRO GLU TYR VAL SER SEQRES 3 A 389 MET CYS ASP SER LEU ALA LYS ILE PRO LYS ARG ALA SER SEQRES 4 A 389 MET VAL HIS SER LEU ILE GLU ALA TYR ALA LEU HIS LYS SEQRES 5 A 389 GLN MET ARG ILE VAL LYS PRO LYS VAL ALA SER MET GLU SEQRES 6 A 389 GLU MET ALA THR PHE HIS THR ASP ALA TYR LEU GLN HIS SEQRES 7 A 389 LEU GLN LYS VAL SER GLN GLU GLY ASP ASP ASP HIS PRO SEQRES 8 A 389 ASP SER ILE GLU TYR GLY LEU GLY TYR ASP CYS PRO ALA SEQRES 9 A 389 THR GLU GLY ILE PHE ASP TYR ALA ALA ALA ILE GLY GLY SEQRES 10 A 389 ALA THR ILE THR ALA ALA GLN CYS LEU ILE ASP GLY MET SEQRES 11 A 389 CYS LYS VAL ALA ILE ASN TRP SER GLY GLY TRP HIS HIS SEQRES 12 A 389 ALA LYS LYS ASP GLU ALA SER GLY PHE CYS TYR LEU ASN SEQRES 13 A 389 ASP ALA VAL LEU GLY ILE LEU ARG LEU ARG ARG LYS PHE SEQRES 14 A 389 GLU ARG ILE LEU TYR VAL ASN LEU ASP LEU HIS HIS GLY SEQRES 15 A 389 ASP GLY VAL GLU ASP ALA PHE SER PHE THR SER LYS VAL SEQRES 16 A 389 MET THR VAL SER LEU HIS LYS PHE SER PRO GLY PHE PHE SEQRES 17 A 389 PRO GLY THR GLY ASP VAL SER ASP VAL GLY LEU GLY LYS SEQRES 18 A 389 GLY ARG TYR TYR SER VAL ASN VAL PRO ILE GLN ASP GLY SEQRES 19 A 389 ILE GLN ASP GLU LYS TYR TYR GLN ILE CYS GLU SER VAL SEQRES 20 A 389 LEU LYS GLU VAL TYR GLN ALA PHE ASN PRO LYS ALA VAL SEQRES 21 A 389 VAL LEU GLN LEU GLY ALA ASP THR ILE ALA GLY ASP PRO SEQRES 22 A 389 MET CYS SER PHE ASN MET THR PRO VAL GLY ILE GLY LYS SEQRES 23 A 389 CYS LEU LYS TYR ILE LEU GLN TRP GLN LEU ALA THR LEU SEQRES 24 A 389 ILE LEU GLY GLY GLY GLY PHE ASN LEU ALA ASN THR ALA SEQRES 25 A 389 ARG CYS TRP THR TYR LEU THR GLY VAL ILE LEU GLY LYS SEQRES 26 A 389 THR LEU SER SER GLU ILE PRO ASP HIS GLU PHE PHE THR SEQRES 27 A 389 ALA TYR GLY PRO ASP TYR VAL LEU GLU ILE THR PRO SER SEQRES 28 A 389 CYS ARG PRO ASP ARG ASN GLU PRO HIS ARG ILE GLN GLN SEQRES 29 A 389 ILE LEU ASN TYR ILE LYS GLY ASN LEU LYS HIS VAL VAL SEQRES 30 A 389 ILE GLU GLY ARG GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 389 MET GLU GLU PRO GLU GLU PRO ALA ASP SER GLY GLN SER SEQRES 2 B 389 LEU VAL PRO VAL TYR ILE TYR SER PRO GLU TYR VAL SER SEQRES 3 B 389 MET CYS ASP SER LEU ALA LYS ILE PRO LYS ARG ALA SER SEQRES 4 B 389 MET VAL HIS SER LEU ILE GLU ALA TYR ALA LEU HIS LYS SEQRES 5 B 389 GLN MET ARG ILE VAL LYS PRO LYS VAL ALA SER MET GLU SEQRES 6 B 389 GLU MET ALA THR PHE HIS THR ASP ALA TYR LEU GLN HIS SEQRES 7 B 389 LEU GLN LYS VAL SER GLN GLU GLY ASP ASP ASP HIS PRO SEQRES 8 B 389 ASP SER ILE GLU TYR GLY LEU GLY TYR ASP CYS PRO ALA SEQRES 9 B 389 THR GLU GLY ILE PHE ASP TYR ALA ALA ALA ILE GLY GLY SEQRES 10 B 389 ALA THR ILE THR ALA ALA GLN CYS LEU ILE ASP GLY MET SEQRES 11 B 389 CYS LYS VAL ALA ILE ASN TRP SER GLY GLY TRP HIS HIS SEQRES 12 B 389 ALA LYS LYS ASP GLU ALA SER GLY PHE CYS TYR LEU ASN SEQRES 13 B 389 ASP ALA VAL LEU GLY ILE LEU ARG LEU ARG ARG LYS PHE SEQRES 14 B 389 GLU ARG ILE LEU TYR VAL ASN LEU ASP LEU HIS HIS GLY SEQRES 15 B 389 ASP GLY VAL GLU ASP ALA PHE SER PHE THR SER LYS VAL SEQRES 16 B 389 MET THR VAL SER LEU HIS LYS PHE SER PRO GLY PHE PHE SEQRES 17 B 389 PRO GLY THR GLY ASP VAL SER ASP VAL GLY LEU GLY LYS SEQRES 18 B 389 GLY ARG TYR TYR SER VAL ASN VAL PRO ILE GLN ASP GLY SEQRES 19 B 389 ILE GLN ASP GLU LYS TYR TYR GLN ILE CYS GLU SER VAL SEQRES 20 B 389 LEU LYS GLU VAL TYR GLN ALA PHE ASN PRO LYS ALA VAL SEQRES 21 B 389 VAL LEU GLN LEU GLY ALA ASP THR ILE ALA GLY ASP PRO SEQRES 22 B 389 MET CYS SER PHE ASN MET THR PRO VAL GLY ILE GLY LYS SEQRES 23 B 389 CYS LEU LYS TYR ILE LEU GLN TRP GLN LEU ALA THR LEU SEQRES 24 B 389 ILE LEU GLY GLY GLY GLY PHE ASN LEU ALA ASN THR ALA SEQRES 25 B 389 ARG CYS TRP THR TYR LEU THR GLY VAL ILE LEU GLY LYS SEQRES 26 B 389 THR LEU SER SER GLU ILE PRO ASP HIS GLU PHE PHE THR SEQRES 27 B 389 ALA TYR GLY PRO ASP TYR VAL LEU GLU ILE THR PRO SER SEQRES 28 B 389 CYS ARG PRO ASP ARG ASN GLU PRO HIS ARG ILE GLN GLN SEQRES 29 B 389 ILE LEU ASN TYR ILE LYS GLY ASN LEU LYS HIS VAL VAL SEQRES 30 B 389 ILE GLU GLY ARG GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 6 ACE ARG HIS ALY ALY MCM SEQRES 1 D 6 ACE ARG HIS ALY ALY MCM HET ACE C 1 3 HET ALY C 4 12 HET ALY C 5 12 HET MCM C 6 13 HET ACE D 1 3 HET ALY D 4 12 HET ALY D 5 12 HET MCM D 6 13 HET ZN A 401 1 HET K A 402 1 HET GOL A 403 6 HET ZN B 401 1 HET K B 402 1 HET GOL B 403 6 HET GOL D 101 6 HETNAM ACE ACETYL GROUP HETNAM ALY N(6)-ACETYLLYSINE HETNAM MCM 7-AMINO-4-METHYL-CHROMEN-2-ONE HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM GOL GLYCEROL HETSYN MCM 7-AMINO-4-METHYLCOUMARIN HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 ALY 4(C8 H16 N2 O3) FORMUL 3 MCM 2(C10 H9 N O2) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 K 2(K 1+) FORMUL 7 GOL 3(C3 H8 O3) FORMUL 12 HOH *591(H2 O) HELIX 1 AA1 SER A 21 ASP A 29 1 9 HELIX 2 AA2 LYS A 36 TYR A 48 1 13 HELIX 3 AA3 ALA A 49 MET A 54 5 6 HELIX 4 AA4 SER A 63 ALA A 68 1 6 HELIX 5 AA5 THR A 72 GLN A 84 1 13 HELIX 6 AA6 GLY A 107 ASP A 128 1 22 HELIX 7 AA7 ASN A 156 ARG A 166 1 11 HELIX 8 AA8 GLY A 182 PHE A 189 1 8 HELIX 9 AA9 LEU A 219 ARG A 223 5 5 HELIX 10 AB1 GLN A 236 ASN A 256 1 21 HELIX 11 AB2 GLY A 265 ILE A 269 5 5 HELIX 12 AB3 THR A 280 GLN A 293 1 14 HELIX 13 AB4 ASN A 307 LEU A 323 1 17 HELIX 14 AB5 PHE A 336 GLY A 341 5 6 HELIX 15 AB6 GLU A 358 LYS A 374 1 17 HELIX 16 AB7 SER B 21 ASP B 29 1 9 HELIX 17 AB8 LYS B 36 TYR B 48 1 13 HELIX 18 AB9 ALA B 49 MET B 54 5 6 HELIX 19 AC1 SER B 63 ALA B 68 1 6 HELIX 20 AC2 THR B 72 GLN B 84 1 13 HELIX 21 AC3 GLY B 107 ASP B 128 1 22 HELIX 22 AC4 ASN B 156 ARG B 166 1 11 HELIX 23 AC5 GLY B 182 PHE B 189 1 8 HELIX 24 AC6 LEU B 219 ARG B 223 5 5 HELIX 25 AC7 GLN B 236 ASN B 256 1 21 HELIX 26 AC8 GLY B 265 ILE B 269 5 5 HELIX 27 AC9 THR B 280 GLN B 293 1 14 HELIX 28 AD1 ASN B 307 GLY B 324 1 18 HELIX 29 AD2 PHE B 336 GLY B 341 5 6 HELIX 30 AD3 GLU B 358 LYS B 374 1 17 SHEET 1 AA1 8 ARG A 55 VAL A 57 0 SHEET 2 AA1 8 VAL A 17 ILE A 19 1 N TYR A 18 O ARG A 55 SHEET 3 AA1 8 VAL A 133 ASN A 136 1 O ILE A 135 N ILE A 19 SHEET 4 AA1 8 ALA A 297 LEU A 301 1 O ILE A 300 N ASN A 136 SHEET 5 AA1 8 ALA A 259 GLN A 263 1 N LEU A 262 O LEU A 299 SHEET 6 AA1 8 ILE A 172 ASN A 176 1 N VAL A 175 O VAL A 261 SHEET 7 AA1 8 VAL A 195 LYS A 202 1 O MET A 196 N TYR A 174 SHEET 8 AA1 8 SER A 226 ILE A 231 1 O VAL A 229 N SER A 199 SHEET 1 AA2 8 ARG B 55 VAL B 57 0 SHEET 2 AA2 8 VAL B 17 ILE B 19 1 N TYR B 18 O ARG B 55 SHEET 3 AA2 8 VAL B 133 ASN B 136 1 O ILE B 135 N ILE B 19 SHEET 4 AA2 8 ALA B 297 LEU B 301 1 O ILE B 300 N ALA B 134 SHEET 5 AA2 8 ALA B 259 GLN B 263 1 N LEU B 262 O LEU B 301 SHEET 6 AA2 8 ILE B 172 ASN B 176 1 N LEU B 173 O VAL B 261 SHEET 7 AA2 8 VAL B 195 LYS B 202 1 O VAL B 198 N ASN B 176 SHEET 8 AA2 8 SER B 226 ILE B 231 1 O VAL B 227 N THR B 197 LINK C ACE C 1 N ARG C 2 1555 1555 1.34 LINK C HIS C 3 N ALY C 4 1555 1555 1.32 LINK C ALY C 4 N ALY C 5 1555 1555 1.34 LINK C ALY C 5 N MCM C 6 1555 1555 1.34 LINK C ACE D 1 N ARG D 2 1555 1555 1.33 LINK C HIS D 3 N ALY D 4 1555 1555 1.33 LINK C ALY D 4 N ALY D 5 1555 1555 1.34 LINK C ALY D 5 N MCM D 6 1555 1555 1.33 LINK OD2 ASP A 178 ZN ZN A 401 1555 1555 1.87 LINK ND1 HIS A 180 ZN ZN A 401 1555 1555 2.07 LINK O PHE A 189 K K A 402 1555 1555 2.63 LINK O THR A 192 K K A 402 1555 1555 2.77 LINK O VAL A 195 K K A 402 1555 1555 2.59 LINK O TYR A 225 K K A 402 1555 1555 3.05 LINK OD2 ASP A 267 ZN ZN A 401 1555 1555 1.88 LINK ZN ZN A 401 OH ALY C 5 1555 1555 1.96 LINK K K A 402 O HOH A 582 1555 1555 2.72 LINK K K A 402 O HOH A 690 1555 1555 2.86 LINK OD2 ASP B 178 ZN ZN B 401 1555 1555 1.90 LINK ND1 HIS B 180 ZN ZN B 401 1555 1555 2.05 LINK O PHE B 189 K K B 402 1555 1555 2.62 LINK O THR B 192 K K B 402 1555 1555 2.79 LINK O VAL B 195 K K B 402 1555 1555 2.62 LINK O TYR B 225 K K B 402 1555 1555 3.03 LINK OD2 ASP B 267 ZN ZN B 401 1555 1555 1.88 LINK ZN ZN B 401 O HOH B 510 1555 1555 2.65 LINK ZN ZN B 401 OH ALY D 5 1555 1555 1.96 LINK K K B 402 O HOH B 569 1555 1555 2.69 LINK K K B 402 O HOH B 663 1555 1555 2.82 CISPEP 1 PHE A 208 PRO A 209 0 0.27 CISPEP 2 GLY A 341 PRO A 342 0 4.37 CISPEP 3 PHE B 208 PRO B 209 0 -0.75 CISPEP 4 GLY B 341 PRO B 342 0 3.89 SITE 1 AC1 3 ASP A 178 ASP A 267 HOH A 507 SITE 1 AC2 6 PHE A 189 THR A 192 VAL A 195 TYR A 225 SITE 2 AC2 6 HOH A 582 HOH A 690 SITE 1 AC3 5 LYS A 145 GLU A 148 HOH A 531 HOH A 569 SITE 2 AC3 5 HOH A 647 SITE 1 AC4 3 ASP B 178 ASP B 267 HOH B 510 SITE 1 AC5 6 PHE B 189 THR B 192 VAL B 195 TYR B 225 SITE 2 AC5 6 HOH B 569 HOH B 663 SITE 1 AC6 4 GLU A 330 ALA B 188 HOH B 582 HOH B 679 SITE 1 AC7 2 GLU B 148 HOH D 201 CRYST1 82.332 98.206 104.281 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012146 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010183 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009589 0.00000