HEADER IMMUNE SYSTEM 24-AUG-15 5DD1 TITLE CRYSTAL STRUCTURES IN AN ANTI-HIV ANTIBODY LINEAGE FROM IMMUNIZATION TITLE 2 OF RHESUS MACAQUES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-HIV ANTIBODY DH570 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTI-HIV ANTIBODY DH570 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_TAXID: 9544; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293, EXPI293; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 9 ORGANISM_TAXID: 9544; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK293 EXPI293 KEYWDS HIV HIV-1 GP41 MPER ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,L.VERKOCZY,K.WIEHE,S.M.ALAM,N.I.NICELY,S.SANTRA,T.BRADLEY, AUTHOR 2 C.PEMBLE,F.GAO,D.C.MONTEFIORI,H.BOUTON-VERVILLE,G.KELSOE,R.PARKS, AUTHOR 3 A.FOULGER,G.TOMARAS,T.B.KEPLE,M.A.MOODY,H.-X.LIAO,B.F.HAYNES REVDAT 5 27-SEP-23 5DD1 1 REMARK REVDAT 4 11-DEC-19 5DD1 1 REMARK REVDAT 3 20-SEP-17 5DD1 1 REMARK REVDAT 2 18-MAY-16 5DD1 1 COMPND REVDAT 1 11-MAY-16 5DD1 0 JRNL AUTH R.ZHANG,L.VERKOCZY,K.WIEHE,S.MUNIR ALAM,N.I.NICELY,S.SANTRA, JRNL AUTH 2 T.BRADLEY,C.W.PEMBLE,J.ZHANG,F.GAO,D.C.MONTEFIORI, JRNL AUTH 3 H.BOUTON-VERVILLE,G.KELSOE,K.LARIMORE,P.D.GREENBERG,R.PARKS, JRNL AUTH 4 A.FOULGER,J.N.PEEL,K.LUO,X.LU,A.M.TRAMA,N.VANDERGRIFT, JRNL AUTH 5 G.D.TOMARAS,T.B.KEPLER,M.A.MOODY,H.X.LIAO,B.F.HAYNES JRNL TITL INITIATION OF IMMUNE TOLERANCE-CONTROLLED HIV GP41 JRNL TITL 2 NEUTRALIZING B CELL LINEAGES. JRNL REF SCI TRANSL MED V. 8 6RA62 2016 JRNL REFN ESSN 1946-6242 JRNL PMID 27122615 JRNL DOI 10.1126/SCITRANSLMED.AAF0618 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.8 REMARK 3 NUMBER OF REFLECTIONS : 42808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.8338 - 3.7488 0.82 3270 147 0.1346 0.1605 REMARK 3 2 3.7488 - 2.9780 0.69 2792 127 0.1839 0.2320 REMARK 3 3 2.9780 - 2.6022 0.95 3982 181 0.1911 0.2360 REMARK 3 4 2.6022 - 2.3646 0.93 3922 178 0.1920 0.2316 REMARK 3 5 2.3646 - 2.1953 0.49 2051 91 0.2118 0.2733 REMARK 3 6 2.1953 - 2.0660 0.87 3656 166 0.2211 0.2964 REMARK 3 7 2.0660 - 1.9626 0.81 3385 153 0.2325 0.2892 REMARK 3 8 1.9626 - 1.8772 0.41 1724 76 0.2550 0.3060 REMARK 3 9 1.8772 - 1.8050 0.79 3352 150 0.2251 0.2834 REMARK 3 10 1.8050 - 1.7427 0.82 3466 158 0.2046 0.2503 REMARK 3 11 1.7427 - 1.6882 0.78 3265 153 0.2316 0.2718 REMARK 3 12 1.6882 - 1.6400 0.77 3236 142 0.2421 0.2951 REMARK 3 13 1.6400 - 1.5968 0.68 2865 120 0.2630 0.3195 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3462 REMARK 3 ANGLE : 1.139 4745 REMARK 3 CHIRALITY : 0.041 554 REMARK 3 PLANARITY : 0.005 603 REMARK 3 DIHEDRAL : 13.574 1219 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN H AND RESID 1:32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4061 12.8557 49.9098 REMARK 3 T TENSOR REMARK 3 T11: 0.9770 T22: 0.4920 REMARK 3 T33: 0.7314 T12: 0.0862 REMARK 3 T13: -0.2195 T23: 0.2514 REMARK 3 L TENSOR REMARK 3 L11: 3.2779 L22: 1.4413 REMARK 3 L33: 2.4727 L12: 0.9567 REMARK 3 L13: -1.0406 L23: 0.8829 REMARK 3 S TENSOR REMARK 3 S11: -0.4198 S12: 0.6783 S13: 0.8698 REMARK 3 S21: 0.0916 S22: 0.3179 S23: 0.3240 REMARK 3 S31: -1.1607 S32: -0.5815 S33: 0.0229 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN H AND RESID 33:52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6227 4.9631 53.4580 REMARK 3 T TENSOR REMARK 3 T11: 0.4358 T22: 0.3648 REMARK 3 T33: 0.3711 T12: -0.0806 REMARK 3 T13: -0.0552 T23: 0.1139 REMARK 3 L TENSOR REMARK 3 L11: 5.5477 L22: 3.7727 REMARK 3 L33: 5.7656 L12: 0.9049 REMARK 3 L13: 0.7927 L23: 0.3666 REMARK 3 S TENSOR REMARK 3 S11: -0.3343 S12: 0.3756 S13: 0.3067 REMARK 3 S21: -0.1919 S22: 0.0724 S23: 0.1427 REMARK 3 S31: -0.6667 S32: 0.0597 S33: 0.1921 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN H AND RESID 53:77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.1403 12.0507 51.9318 REMARK 3 T TENSOR REMARK 3 T11: 0.7805 T22: 0.6256 REMARK 3 T33: 0.7044 T12: -0.3663 REMARK 3 T13: -0.0423 T23: 0.2646 REMARK 3 L TENSOR REMARK 3 L11: 1.6730 L22: 7.9551 REMARK 3 L33: 3.7157 L12: -3.3788 REMARK 3 L13: -1.3791 L23: 1.7181 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: 0.3174 S13: 0.8710 REMARK 3 S21: -0.0159 S22: 0.6241 S23: -0.2413 REMARK 3 S31: -1.1155 S32: 0.4774 S33: -0.3902 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN H AND RESID 78:119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5702 5.4655 52.2121 REMARK 3 T TENSOR REMARK 3 T11: 0.4774 T22: 0.3878 REMARK 3 T33: 0.3859 T12: -0.1206 REMARK 3 T13: -0.0624 T23: 0.1010 REMARK 3 L TENSOR REMARK 3 L11: 1.2530 L22: 0.6264 REMARK 3 L33: 2.8189 L12: 0.3305 REMARK 3 L13: 1.7176 L23: 0.8069 REMARK 3 S TENSOR REMARK 3 S11: -0.4414 S12: 0.4374 S13: 0.2789 REMARK 3 S21: -0.2025 S22: 0.0956 S23: 0.0173 REMARK 3 S31: -1.2046 S32: 0.6343 S33: 0.2658 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN H AND RESID 120:134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5545 -22.5664 29.4777 REMARK 3 T TENSOR REMARK 3 T11: 0.4013 T22: 0.3932 REMARK 3 T33: 0.3626 T12: -0.1503 REMARK 3 T13: -0.0553 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 4.8895 L22: 0.2389 REMARK 3 L33: 4.3307 L12: -0.5259 REMARK 3 L13: -1.3367 L23: 0.6042 REMARK 3 S TENSOR REMARK 3 S11: -0.1066 S12: 0.1645 S13: -0.9148 REMARK 3 S21: -0.1157 S22: 0.1047 S23: -0.1498 REMARK 3 S31: 0.9418 S32: -0.7900 S33: 0.0376 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN H AND RESID 135:203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3718 -11.3532 33.5737 REMARK 3 T TENSOR REMARK 3 T11: 0.2456 T22: 0.2998 REMARK 3 T33: 0.2040 T12: 0.0216 REMARK 3 T13: 0.0151 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 2.8355 L22: 3.5072 REMARK 3 L33: 2.5870 L12: 1.3188 REMARK 3 L13: -0.4578 L23: -0.9787 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: -0.1860 S13: 0.0137 REMARK 3 S21: 0.1523 S22: 0.0022 S23: 0.1620 REMARK 3 S31: -0.1845 S32: -0.1027 S33: -0.0026 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN H AND RESID 204:214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8577 -10.8376 24.8938 REMARK 3 T TENSOR REMARK 3 T11: 0.3225 T22: 0.2260 REMARK 3 T33: 0.3576 T12: 0.0619 REMARK 3 T13: -0.0041 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 2.6584 L22: 2.7327 REMARK 3 L33: 6.7182 L12: 2.3938 REMARK 3 L13: -0.2071 L23: -0.4519 REMARK 3 S TENSOR REMARK 3 S11: -0.3508 S12: 0.4584 S13: 0.0216 REMARK 3 S21: -0.6854 S22: 0.3553 S23: 0.7333 REMARK 3 S31: 0.2644 S32: -0.1075 S33: 0.0745 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN L AND RESID 1:101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3258 -7.9734 65.3000 REMARK 3 T TENSOR REMARK 3 T11: 0.2232 T22: 0.1996 REMARK 3 T33: 0.2403 T12: 0.0386 REMARK 3 T13: 0.0089 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 3.5053 L22: 2.4530 REMARK 3 L33: 2.3378 L12: 2.3934 REMARK 3 L13: 0.2380 L23: -0.5003 REMARK 3 S TENSOR REMARK 3 S11: -0.0638 S12: -0.0131 S13: 0.1268 REMARK 3 S21: -0.0412 S22: 0.0123 S23: 0.0267 REMARK 3 S31: -0.1609 S32: 0.0249 S33: 0.0523 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN L AND RESID 102:113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3322 -21.5415 55.4192 REMARK 3 T TENSOR REMARK 3 T11: 0.2666 T22: 0.3711 REMARK 3 T33: 0.2622 T12: -0.0589 REMARK 3 T13: 0.0219 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.6843 L22: 4.3340 REMARK 3 L33: 3.2927 L12: 3.9782 REMARK 3 L13: 3.4821 L23: 3.7334 REMARK 3 S TENSOR REMARK 3 S11: 0.1473 S12: -0.1838 S13: 0.2713 REMARK 3 S21: 0.1534 S22: -0.3250 S23: 0.1192 REMARK 3 S31: 0.2012 S32: -0.1733 S33: 0.1532 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN L AND RESID 114:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0554 -24.7335 34.4461 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.1980 REMARK 3 T33: 0.2177 T12: -0.0267 REMARK 3 T13: -0.0030 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.7411 L22: 0.8493 REMARK 3 L33: 5.9127 L12: -0.1787 REMARK 3 L13: -1.2430 L23: 0.3816 REMARK 3 S TENSOR REMARK 3 S11: -0.0105 S12: -0.1307 S13: -0.0403 REMARK 3 S21: 0.1550 S22: -0.0109 S23: -0.0208 REMARK 3 S31: 0.2377 S32: 0.0672 S33: 0.0132 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DD1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213040. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46323 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.62200 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5DD0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 MES, 14% PEG 4000, PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP H 72 REMARK 465 THR H 73 REMARK 465 SER H 74 REMARK 465 LYS H 75 REMARK 465 SER H 76 REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 ARG H 129 REMARK 465 THR H 215 REMARK 465 CYS H 216 REMARK 465 GLY H 217 REMARK 465 GLY H 218 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER L 145 OG1 THR L 197 2.07 REMARK 500 O HOH L 301 O HOH L 414 2.14 REMARK 500 O HOH L 364 O HOH L 488 2.16 REMARK 500 O HOH L 435 O HOH L 462 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -8.84 85.15 REMARK 500 ASN H 100 49.94 -102.25 REMARK 500 SER H 100C 170.71 178.58 REMARK 500 SER H 100H -159.94 -89.82 REMARK 500 SER L 30 -124.63 55.99 REMARK 500 ALA L 51 -30.92 68.40 REMARK 500 ALA L 51 -30.92 68.02 REMARK 500 SER L 52 -2.04 -142.96 REMARK 500 SER L 52 -2.29 -142.96 REMARK 500 SER L 77 73.98 61.49 REMARK 500 SER L 77 72.64 64.53 REMARK 500 ALA L 84 177.15 179.18 REMARK 500 TYR L 91 33.58 -144.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY H 100A PHE H 100B -31.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DD0 RELATED DB: PDB REMARK 900 5DD0 CONTAINS THE SAME ANTIBODY FAB FRAGMENT IN COMPLEX WITH GP41 REMARK 900 MPER PEPTIDE REMARK 900 RELATED ID: 5DD3 RELATED DB: PDB REMARK 900 RELATED ID: 5DD5 RELATED DB: PDB REMARK 900 RELATED ID: 5DD6 RELATED DB: PDB DBREF 5DD1 H 1 218 PDB 5DD1 5DD1 1 218 DBREF 5DD1 L 1 214 PDB 5DD1 5DD1 1 214 SEQRES 1 H 233 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 233 PRO SER GLU THR LEU SER VAL THR CYS ALA VAL SER GLY SEQRES 3 H 233 VAL SER PHE SER SER PHE TRP TRP GLY TRP ILE ARG GLN SEQRES 4 H 233 SER PRO GLY LYS GLY LEU GLU TRP ILE GLY THR ILE TYR SEQRES 5 H 233 GLY SER SER GLY ARG GLY GLU TYR ASN PRO SER LEU LYS SEQRES 6 H 233 SER ARG THR THR ILE SER ARG ASP THR SER LYS SER GLN SEQRES 7 H 233 ILE SER LEU GLU LEU THR SER VAL THR ALA ALA ASP THR SEQRES 8 H 233 ALA ILE TYR TYR CYS SER ARG GLY LEU PHE GLN PRO ASN SEQRES 9 H 233 GLY PHE SER PHE THR LEU THR SER TYR TRP PHE ASP VAL SEQRES 10 H 233 TRP GLY PRO GLY VAL PRO VAL THR VAL SER SER ALA SER SEQRES 11 H 233 THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER SEQRES 12 H 233 ARG SER THR SER GLU SER THR ALA ALA LEU GLY CYS LEU SEQRES 13 H 233 VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP SEQRES 14 H 233 ASN SER GLY SER LEU THR SER GLY VAL HIS THR PHE PRO SEQRES 15 H 233 ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER SEQRES 16 H 233 VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR SEQRES 17 H 233 TYR VAL CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS SEQRES 18 H 233 VAL ASP LYS ARG VAL GLU ILE LYS THR CYS GLY GLY SEQRES 1 L 214 ASP ILE GLN VAL THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP THR VAL THR ILE SER CYS ARG THR SER SEQRES 3 L 214 GLN SER ILE SER THR TRP LEU ALA TRP TYR GLN VAL LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR THR ALA SER SEQRES 5 L 214 SER LEU ALA SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN SER GLU ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 214 ILE SER LEU PRO PRO THR PHE GLY LEU GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG ALA VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER GLU ASP GLN VAL LYS SER GLY THR VAL SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA SER VAL LYS TRP LYS VAL ASP GLY VAL LEU LYS THR SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP ASN THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 ASN THR ASP TYR GLN SER HIS ASN VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS FORMUL 3 HOH *309(H2 O) HELIX 1 AA1 SER H 28 SER H 31 5 4 HELIX 2 AA2 LEU H 63 SER H 65 5 3 HELIX 3 AA3 THR H 83 THR H 87 5 5 HELIX 4 AA4 SER H 156 SER H 158 5 3 HELIX 5 AA5 SER H 187 LEU H 189 5 3 HELIX 6 AA6 LYS H 201 ASN H 204 5 4 HELIX 7 AA7 GLN L 79 PHE L 83 5 5 HELIX 8 AA8 SER L 121 GLY L 128 1 8 HELIX 9 AA9 ASN L 183 SER L 188 1 6 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 AA1 4 ILE H 78 LEU H 82 -1 O LEU H 80 N VAL H 20 SHEET 4 AA1 4 THR H 67 SER H 70 -1 N SER H 70 O SER H 79 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 VAL H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 LEU H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 TRP H 33 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 TYR H 52 -1 O ILE H 51 N TRP H 34 SHEET 6 AA2 6 GLY H 57 TYR H 59 -1 O GLU H 58 N THR H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 VAL H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 LEU H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 4 TRP H 100J TRP H 103 -1 O TRP H 100J N LEU H 96 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 VAL H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 VAL L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 THR L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA8 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA8 6 LEU L 33 VAL L 38 -1 N VAL L 38 O THR L 85 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 ALA L 13 0 SHEET 2 AA9 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA9 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB2 4 VAL L 153 LYS L 155 0 SHEET 2 AB2 4 SER L 145 VAL L 150 -1 N TRP L 148 O LYS L 155 SHEET 3 AB2 4 VAL L 191 THR L 197 -1 O GLU L 195 N LYS L 147 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.04 CISPEP 1 PHE H 146 PRO H 147 0 -6.60 CISPEP 2 GLU H 148 PRO H 149 0 0.35 CISPEP 3 SER L 7 PRO L 8 0 -5.43 CISPEP 4 SER L 7 PRO L 8 0 -2.31 CISPEP 5 LEU L 94 PRO L 95 0 -4.94 CISPEP 6 TYR L 140 PRO L 141 0 3.86 CRYST1 43.115 49.168 54.653 90.52 104.58 96.57 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023194 0.002671 0.006140 0.00000 SCALE2 0.000000 0.020473 0.000805 0.00000 SCALE3 0.000000 0.000000 0.018920 0.00000