HEADER IMMUNE SYSTEM 24-AUG-15 5DD5 TITLE CRYSTAL STRUCTURES IN AN ANTI-HIV ANTIBODY LINEAGE FROM IMMUNIZATION TITLE 2 OF RHESUS MACAQUES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-HIV ANTIBODY DH570.9 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTI-HIV ANTIBODY DH570.9 FAB HEAVY CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_TAXID: 9544; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293, EXPI293; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 9 ORGANISM_TAXID: 9544; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK293, EXPI293 KEYWDS HIV HIV-1 GP41 MPER ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR N.I.NICELY,C.W.PEMBLE IV,B.F.HAYNES REVDAT 5 27-SEP-23 5DD5 1 REMARK REVDAT 4 11-DEC-19 5DD5 1 REMARK REVDAT 3 20-SEP-17 5DD5 1 REMARK REVDAT 2 18-MAY-16 5DD5 1 COMPND REVDAT 1 11-MAY-16 5DD5 0 JRNL AUTH R.ZHANG,L.VERKOCZY,K.WIEHE,S.MUNIR ALAM,N.I.NICELY,S.SANTRA, JRNL AUTH 2 T.BRADLEY,C.W.PEMBLE,J.ZHANG,F.GAO,D.C.MONTEFIORI, JRNL AUTH 3 H.BOUTON-VERVILLE,G.KELSOE,K.LARIMORE,P.D.GREENBERG,R.PARKS, JRNL AUTH 4 A.FOULGER,J.N.PEEL,K.LUO,X.LU,A.M.TRAMA,N.VANDERGRIFT, JRNL AUTH 5 G.D.TOMARAS,T.B.KEPLER,M.A.MOODY,H.X.LIAO,B.F.HAYNES JRNL TITL INITIATION OF IMMUNE TOLERANCE-CONTROLLED HIV GP41 JRNL TITL 2 NEUTRALIZING B CELL LINEAGES. JRNL REF SCI TRANSL MED V. 8 6RA62 2016 JRNL REFN ESSN 1946-6242 JRNL PMID 27122615 JRNL DOI 10.1126/SCITRANSLMED.AAF0618 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 33163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.7075 - 4.5551 1.00 2413 155 0.1473 0.1768 REMARK 3 2 4.5551 - 3.6257 1.00 2289 147 0.1520 0.1969 REMARK 3 3 3.6257 - 3.1703 1.00 2268 145 0.1664 0.2373 REMARK 3 4 3.1703 - 2.8818 1.00 2238 144 0.1942 0.2495 REMARK 3 5 2.8818 - 2.6760 1.00 2246 144 0.1913 0.2798 REMARK 3 6 2.6760 - 2.5187 1.00 2220 143 0.2071 0.2645 REMARK 3 7 2.5187 - 2.3929 1.00 2213 141 0.2174 0.3068 REMARK 3 8 2.3929 - 2.2890 1.00 2232 144 0.2158 0.2970 REMARK 3 9 2.2890 - 2.2010 0.98 2151 138 0.3241 0.4857 REMARK 3 10 2.2010 - 2.1252 0.99 2199 141 0.2094 0.2893 REMARK 3 11 2.1252 - 2.0588 0.99 2199 141 0.2265 0.2814 REMARK 3 12 2.0588 - 2.0001 0.99 2179 139 0.2184 0.2742 REMARK 3 13 2.0001 - 1.9475 0.99 2164 140 0.2648 0.3095 REMARK 3 14 1.9475 - 1.9000 0.98 2152 138 0.3880 0.4301 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3425 REMARK 3 ANGLE : 1.110 4671 REMARK 3 CHIRALITY : 0.041 539 REMARK 3 PLANARITY : 0.006 590 REMARK 3 DIHEDRAL : 13.318 1200 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN H AND RESID 1:42) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8924 7.1135 -1.9539 REMARK 3 T TENSOR REMARK 3 T11: 0.1170 T22: 0.1280 REMARK 3 T33: 0.2097 T12: -0.0160 REMARK 3 T13: -0.0421 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.4418 L22: 1.8651 REMARK 3 L33: 3.9822 L12: -0.4954 REMARK 3 L13: 1.0532 L23: -0.8889 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: -0.0899 S13: -0.0372 REMARK 3 S21: -0.0722 S22: 0.0773 S23: 0.2591 REMARK 3 S31: 0.0054 S32: -0.1821 S33: -0.1237 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN H AND RESID 43:58) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8338 8.9158 0.2178 REMARK 3 T TENSOR REMARK 3 T11: 0.1343 T22: 0.1138 REMARK 3 T33: 0.1940 T12: -0.0045 REMARK 3 T13: -0.0521 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 3.1176 L22: 3.3386 REMARK 3 L33: 8.4602 L12: -0.4893 REMARK 3 L13: -1.4453 L23: 2.3565 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: -0.1068 S13: 0.1454 REMARK 3 S21: 0.0840 S22: 0.0454 S23: -0.2694 REMARK 3 S31: -0.3690 S32: 0.3169 S33: -0.1980 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN H AND RESID 59:125) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1022 8.1501 -5.9702 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.1370 REMARK 3 T33: 0.1955 T12: -0.0121 REMARK 3 T13: -0.0391 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.6852 L22: 0.1080 REMARK 3 L33: 0.7609 L12: -0.2337 REMARK 3 L13: -0.0595 L23: 0.1120 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: -0.1036 S13: -0.0073 REMARK 3 S21: 0.0438 S22: 0.0640 S23: -0.0092 REMARK 3 S31: -0.1294 S32: 0.0064 S33: 0.0418 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN H AND RESID 126:214) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6983 -2.4713 -32.3131 REMARK 3 T TENSOR REMARK 3 T11: 0.2040 T22: 0.3377 REMARK 3 T33: 0.1988 T12: -0.1193 REMARK 3 T13: 0.0446 T23: -0.0874 REMARK 3 L TENSOR REMARK 3 L11: 1.2649 L22: 3.7730 REMARK 3 L33: 2.0705 L12: -0.4972 REMARK 3 L13: -0.1304 L23: 1.5800 REMARK 3 S TENSOR REMARK 3 S11: 0.1402 S12: 0.1491 S13: -0.1148 REMARK 3 S21: 0.4152 S22: -0.5459 S23: 0.4515 REMARK 3 S31: 0.3794 S32: -0.6573 S33: 0.2909 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN L AND RESID 1:26) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5411 -10.2529 -15.7326 REMARK 3 T TENSOR REMARK 3 T11: 0.3195 T22: 0.1875 REMARK 3 T33: 0.1585 T12: -0.0342 REMARK 3 T13: -0.0508 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 2.2148 L22: 2.8320 REMARK 3 L33: 0.9027 L12: 1.9600 REMARK 3 L13: 1.5411 L23: 1.7429 REMARK 3 S TENSOR REMARK 3 S11: -0.2221 S12: 0.1875 S13: 0.1540 REMARK 3 S21: -0.8457 S22: 0.2175 S23: 0.0699 REMARK 3 S31: -0.2659 S32: 0.1465 S33: 0.0076 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN L AND RESID 27:106) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8118 -9.7824 -7.5795 REMARK 3 T TENSOR REMARK 3 T11: 0.1616 T22: 0.1629 REMARK 3 T33: 0.1534 T12: 0.0205 REMARK 3 T13: -0.0518 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.2091 L22: 2.6788 REMARK 3 L33: 1.8656 L12: 1.2304 REMARK 3 L13: 0.6811 L23: 0.7335 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: -0.1522 S13: 0.0395 REMARK 3 S21: -0.0816 S22: -0.0213 S23: 0.1543 REMARK 3 S31: 0.1886 S32: 0.0281 S33: 0.0473 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN L AND RESID 107:154) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9512 -4.1486 -40.3602 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.1353 REMARK 3 T33: 0.1092 T12: -0.0214 REMARK 3 T13: -0.0210 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.4089 L22: 2.1143 REMARK 3 L33: 1.6532 L12: -0.2886 REMARK 3 L13: 0.8204 L23: -0.6312 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.0221 S13: -0.1076 REMARK 3 S21: 0.1395 S22: 0.0192 S23: -0.0095 REMARK 3 S31: 0.0568 S32: -0.0522 S33: -0.0083 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN L AND RESID 155:213) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2103 -2.9474 -41.4682 REMARK 3 T TENSOR REMARK 3 T11: 0.1036 T22: 0.1412 REMARK 3 T33: 0.1630 T12: -0.0141 REMARK 3 T13: -0.0008 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.6153 L22: 2.7656 REMARK 3 L33: 2.4089 L12: -0.5283 REMARK 3 L13: 0.9879 L23: -1.2794 REMARK 3 S TENSOR REMARK 3 S11: 0.0316 S12: 0.0707 S13: -0.0725 REMARK 3 S21: 0.0992 S22: -0.0270 S23: -0.2049 REMARK 3 S31: -0.0130 S32: 0.0790 S33: 0.0064 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33258 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 17.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.21900 REMARK 200 FOR THE DATA SET : 5.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5DD0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 20% PEG 1500, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.17500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.21000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.21000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.17500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 ARG H 129 REMARK 465 SER H 130 REMARK 465 THR H 215 REMARK 465 CYS H 216 REMARK 465 GLY H 217 REMARK 465 GLY H 218 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO H 41 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS H 117 O HOH H 301 2.10 REMARK 500 O GLY H 157 O HOH H 302 2.15 REMARK 500 O GLY H 190 O HOH H 303 2.15 REMARK 500 O HOH H 423 O HOH H 482 2.16 REMARK 500 O HOH L 467 O HOH L 499 2.16 REMARK 500 O HOH L 332 O HOH L 370 2.18 REMARK 500 OG SER H 173 O HOH H 304 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -9.31 72.31 REMARK 500 SER H 100H -159.84 -84.59 REMARK 500 SER L 30 -120.16 58.17 REMARK 500 ALA L 51 -33.63 71.68 REMARK 500 SER L 52 -1.71 -141.58 REMARK 500 THR L 77 72.41 58.70 REMARK 500 ALA L 84 -177.96 -173.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 508 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH L 505 DISTANCE = 6.20 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DD0 RELATED DB: PDB REMARK 900 STRUCTURES OF RELATED ANTIBODIES FROM THE SAME LINEAGE REMARK 900 RELATED ID: 5DD1 RELATED DB: PDB REMARK 900 RELATED ID: 5DD3 RELATED DB: PDB REMARK 900 RELATED ID: 5DD6 RELATED DB: PDB REMARK 900 RELATED ID: 5DQD RELATED DB: PDB REMARK 900 RELATED ID: 5DQJ RELATED DB: PDB DBREF 5DD5 H 1 218 PDB 5DD5 5DD5 1 218 DBREF 5DD5 L 1 214 PDB 5DD5 5DD5 1 214 SEQRES 1 H 233 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 233 PRO SER GLU THR LEU SER VAL THR CYS ALA VAL SER GLY SEQRES 3 H 233 VAL SER PHE SER SER PHE TRP TRP GLY TRP ILE ARG GLN SEQRES 4 H 233 PRO PRO GLY LYS GLY LEU GLU TRP VAL GLY THR ILE TYR SEQRES 5 H 233 GLY SER SER GLY ARG ALA GLU TYR ASN PRO SER LEU LYS SEQRES 6 H 233 SER ARG THR THR VAL SER ARG ASP THR SER LYS SER GLN SEQRES 7 H 233 PHE SER LEU GLU LEU THR SER VAL THR ALA ALA ASP THR SEQRES 8 H 233 ALA ILE TYR TYR CYS SER ARG GLY LEU PHE GLN PRO ASN SEQRES 9 H 233 GLY PHE SER PHE THR LEU THR SER TYR TRP PHE ASP VAL SEQRES 10 H 233 TRP GLY PRO GLY VAL LEU VAL THR VAL SER SER ALA SER SEQRES 11 H 233 THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER SEQRES 12 H 233 ARG SER THR SER GLU SER THR ALA ALA LEU GLY CYS LEU SEQRES 13 H 233 VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP SEQRES 14 H 233 ASN SER GLY SER LEU THR SER GLY VAL HIS THR PHE PRO SEQRES 15 H 233 ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER SEQRES 16 H 233 VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR SEQRES 17 H 233 TYR VAL CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS SEQRES 18 H 233 VAL ASP LYS ARG VAL GLU ILE LYS THR CYS GLY GLY SEQRES 1 L 214 ASP ILE GLN VAL THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP THR VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN SER ILE SER THR TRP LEU ALA TRP TYR GLN LEU LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS VAL LEU ILE TYR LYS ALA SER SEQRES 5 L 214 SER LEU GLU SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE THR THR LEU SEQRES 7 L 214 GLN SER GLU ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 214 SER SER LYS PRO PRO THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 214 GLU PHE LYS ARG ALA VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER GLU ASP GLN VAL LYS SER GLY THR VAL SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA SER VAL LYS TRP LYS VAL ASP GLY VAL LEU LYS THR SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP ASN THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 ASN THR ASP TYR GLN SER HIS ASN VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS FORMUL 3 HOH *413(H2 O) HELIX 1 AA1 SER H 28 SER H 31 5 4 HELIX 2 AA2 LEU H 63 SER H 65 5 3 HELIX 3 AA3 THR H 83 THR H 87 5 5 HELIX 4 AA4 SER H 187 LEU H 189 5 3 HELIX 5 AA5 LYS H 201 ASN H 204 5 4 HELIX 6 AA6 GLN L 79 PHE L 83 5 5 HELIX 7 AA7 SER L 121 GLY L 128 1 8 HELIX 8 AA8 ASN L 183 SER L 188 1 6 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ALA H 23 N GLN H 5 SHEET 3 AA1 4 GLN H 77 LEU H 82 -1 O PHE H 78 N CYS H 22 SHEET 4 AA1 4 THR H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 VAL H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 LEU H 96 -1 N TYR H 90 O VAL H 107 SHEET 4 AA2 6 TRP H 33 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 AA2 6 GLU H 46 TYR H 52 -1 O VAL H 48 N TRP H 36 SHEET 6 AA2 6 ALA H 57 TYR H 59 -1 O GLU H 58 N THR H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 VAL H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 LEU H 96 -1 N TYR H 90 O VAL H 107 SHEET 4 AA3 4 TRP H 100J TRP H 103 -1 O TRP H 100J N LEU H 96 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 VAL H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 VAL L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 102 PHE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA8 6 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 LEU L 33 LEU L 38 -1 N LEU L 38 O THR L 85 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 ALA L 13 0 SHEET 2 AA9 4 THR L 102 PHE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA9 4 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB2 4 VAL L 153 LYS L 155 0 SHEET 2 AB2 4 ALA L 144 VAL L 150 -1 N VAL L 150 O VAL L 153 SHEET 3 AB2 4 VAL L 191 HIS L 198 -1 O GLU L 195 N LYS L 147 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.07 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.02 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 CISPEP 1 PHE H 146 PRO H 147 0 -5.16 CISPEP 2 GLU H 148 PRO H 149 0 -2.21 CISPEP 3 SER L 7 PRO L 8 0 -6.23 CISPEP 4 LYS L 94 PRO L 95 0 -8.76 CISPEP 5 TYR L 140 PRO L 141 0 0.72 CRYST1 38.350 77.430 138.420 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026076 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007224 0.00000