HEADER RNA BINDING PROTEIN/RNA 25-AUG-15 5DDQ TITLE L-GLUTAMINE RIBOSWITCH BOUND WITH L-GLUTAMINE SOAKED WITH MN2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-GLUTAMINE RIBOSWITCH RNA (61-MER); COMPND 3 CHAIN: A, B; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A; COMPND 6 CHAIN: C, D; COMPND 7 SYNONYM: U1A; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 32046; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 6 ORGANISM_COMMON: HUMAN; SOURCE 7 ORGANISM_TAXID: 9606; SOURCE 8 GENE: SNRPA; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RIBOSWITCH, L-GLUTAMINE, BOUND-FORM, RNA, RNA BINDING PROTEIN-RNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.REN,D.J.PATEL REVDAT 3 06-MAR-24 5DDQ 1 LINK REVDAT 2 05-APR-17 5DDQ 1 REMARK REVDAT 1 23-DEC-15 5DDQ 0 JRNL AUTH A.REN,Y.XUE,A.PESELIS,A.SERGANOV,H.M.AL-HASHIMI,D.J.PATEL JRNL TITL STRUCTURAL AND DYNAMIC BASIS FOR LOW-AFFINITY, JRNL TITL 2 HIGH-SELECTIVITY BINDING OF L-GLUTAMINE BY THE GLUTAMINE JRNL TITL 3 RIBOSWITCH. JRNL REF CELL REP V. 13 1800 2015 JRNL REFN ESSN 2211-1247 JRNL PMID 26655897 JRNL DOI 10.1016/J.CELREP.2015.10.062 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.1 REMARK 3 NUMBER OF REFLECTIONS : 37211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.330 REMARK 3 FREE R VALUE TEST SET COUNT : 3470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.7730 - 6.9514 0.79 1346 145 0.1834 0.2447 REMARK 3 2 6.9514 - 5.5355 0.81 1407 143 0.1644 0.1978 REMARK 3 3 5.5355 - 4.8410 0.79 1388 137 0.1291 0.1495 REMARK 3 4 4.8410 - 4.4008 0.80 1384 128 0.1263 0.2048 REMARK 3 5 4.4008 - 4.0867 0.80 1369 154 0.1289 0.1775 REMARK 3 6 4.0867 - 3.8466 0.79 1361 153 0.1417 0.1819 REMARK 3 7 3.8466 - 3.6545 0.78 1367 133 0.1664 0.2186 REMARK 3 8 3.6545 - 3.4958 0.80 1379 144 0.1677 0.2779 REMARK 3 9 3.4958 - 3.3615 0.79 1358 135 0.1957 0.2302 REMARK 3 10 3.3615 - 3.2458 0.79 1370 128 0.1838 0.2604 REMARK 3 11 3.2458 - 3.1445 0.78 1351 148 0.1955 0.2705 REMARK 3 12 3.1445 - 3.0547 0.78 1344 128 0.1903 0.2563 REMARK 3 13 3.0547 - 2.9744 0.79 1395 138 0.2177 0.3091 REMARK 3 14 2.9744 - 2.9020 0.79 1313 140 0.2400 0.3611 REMARK 3 15 2.9020 - 2.8361 0.77 1333 157 0.2727 0.3231 REMARK 3 16 2.8361 - 2.7758 0.79 1372 138 0.2913 0.3914 REMARK 3 17 2.7758 - 2.7203 0.77 1343 148 0.2841 0.3857 REMARK 3 18 2.7203 - 2.6690 0.78 1349 138 0.3183 0.3915 REMARK 3 19 2.6690 - 2.6214 0.76 1294 137 0.3210 0.3576 REMARK 3 20 2.6214 - 2.5770 0.76 1317 136 0.3260 0.4173 REMARK 3 21 2.5770 - 2.5355 0.79 1351 134 0.3373 0.3961 REMARK 3 22 2.5355 - 2.4965 0.78 1368 136 0.3222 0.3875 REMARK 3 23 2.4965 - 2.4598 0.76 1319 133 0.3224 0.3579 REMARK 3 24 2.4598 - 2.4252 0.77 1292 127 0.3234 0.3721 REMARK 3 25 2.4252 - 2.3925 0.72 1271 132 0.3749 0.4209 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 29.56 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.25690 REMARK 3 B22 (A**2) : 5.64380 REMARK 3 B33 (A**2) : 1.61300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.41360 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 4560 REMARK 3 ANGLE : 0.966 6791 REMARK 3 CHIRALITY : 0.068 839 REMARK 3 PLANARITY : 0.006 388 REMARK 3 DIHEDRAL : 15.395 2062 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5DDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-15. REMARK 100 THE DEPOSITION ID IS D_1000213067. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : FILM REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES-SODIUM, PH 7.0, 40% (V/V) REMARK 280 2-METHYL-2,4-PENTANEDIOL, 2 MM MNCL2, EVAPORATION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.85050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA C 1 REMARK 465 VAL C 2 REMARK 465 LYS C 97 REMARK 465 ALA D 1 REMARK 465 LYS D 95 REMARK 465 MET D 96 REMARK 465 LYS D 97 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 95 CG CD CE NZ REMARK 470 VAL D 2 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP D 91 O HOH D 201 1.86 REMARK 500 O4 U A 32 O HOH A 201 2.06 REMARK 500 N4 C B 48 O HOH B 201 2.07 REMARK 500 O HOH B 224 O HOH B 251 2.09 REMARK 500 O3' G A 61 O HOH A 202 2.10 REMARK 500 N3 A A 29 O HOH A 203 2.14 REMARK 500 O6 G A 47 O HOH A 204 2.15 REMARK 500 O HOH C 218 O HOH C 227 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 7 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR C 88 -137.61 -109.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 289 DISTANCE = 7.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 103 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 12 N7 REMARK 620 2 HOH A 240 O 73.0 REMARK 620 3 HOH A 250 O 112.7 78.0 REMARK 620 4 HOH A 258 O 78.3 93.5 162.8 REMARK 620 5 HOH A 280 O 111.3 157.0 118.0 66.3 REMARK 620 6 HOH A 286 O 161.0 91.4 73.3 92.2 78.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 109 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 46 O6 REMARK 620 2 HOH A 204 O 93.6 REMARK 620 3 HOH A 235 O 93.1 74.3 REMARK 620 4 HOH A 257 O 69.9 128.0 151.3 REMARK 620 5 HOH A 284 O 175.2 89.8 91.1 105.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 102 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 101 O REMARK 620 2 GLN A 101 OXT 54.3 REMARK 620 3 HOH A 215 O 122.8 88.5 REMARK 620 4 HOH A 222 O 84.2 117.5 76.9 REMARK 620 5 HOH A 227 O 149.1 156.6 75.2 75.5 REMARK 620 6 HOH A 239 O 72.9 106.5 163.5 101.4 88.4 REMARK 620 7 HOH A 247 O 115.1 79.8 94.9 160.1 84.9 81.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 106 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 225 O REMARK 620 2 HOH A 231 O 141.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 107 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 208 O REMARK 620 2 HOH A 280 O 129.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 108 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 241 O REMARK 620 2 HOH A 259 O 85.5 REMARK 620 3 HOH A 275 O 153.4 72.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 110 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 201 O REMARK 620 2 HOH D 228 O 66.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 111 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 274 O REMARK 620 2 HOH A 282 O 77.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 110 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 246 O REMARK 620 2 U B 42 OP1 96.9 REMARK 620 3 ASP C 91 OD2 124.2 109.0 REMARK 620 4 HOH C 216 O 91.8 136.7 100.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 265 O REMARK 620 2 HOH A 283 O 65.9 REMARK 620 3 HOH B 203 O 84.4 139.1 REMARK 620 4 HOH B 225 O 115.8 141.2 76.3 REMARK 620 5 ASP D 91 OD2 161.8 124.0 79.0 67.5 REMARK 620 6 HOH D 201 O 120.8 106.2 64.7 104.7 44.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 107 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 32 O4 REMARK 620 2 G B 46 O6 109.7 REMARK 620 3 G B 47 O6 79.4 82.8 REMARK 620 4 HOH B 201 O 107.6 134.0 78.4 REMARK 620 5 HOH B 248 O 72.5 152.4 123.7 65.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 103 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 101 O REMARK 620 2 HOH B 227 O 107.1 REMARK 620 3 HOH B 228 O 168.2 82.8 REMARK 620 4 HOH B 230 O 90.8 89.8 95.6 REMARK 620 5 HOH B 238 O 95.5 85.3 78.7 172.9 REMARK 620 6 HOH B 255 O 95.7 154.2 73.3 102.0 80.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 224 O REMARK 620 2 HOH B 251 O 59.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 105 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 221 O REMARK 620 2 HOH B 234 O 72.6 REMARK 620 3 HOH B 249 O 141.7 132.2 REMARK 620 4 HOH B 257 O 76.2 124.4 65.6 REMARK 620 5 HOH B 263 O 93.6 65.0 78.2 72.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 106 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 216 O REMARK 620 2 HOH B 245 O 124.8 REMARK 620 3 HOH B 249 O 144.8 81.9 REMARK 620 4 HOH B 257 O 100.5 89.0 53.1 REMARK 620 5 HOH B 261 O 59.4 79.8 111.8 61.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 108 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 241 O REMARK 620 2 HOH B 243 O 96.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 109 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 205 O REMARK 620 2 HOH B 259 O 58.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA D 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DDO RELATED DB: PDB REMARK 900 RELATED ID: 5DDP RELATED DB: PDB REMARK 900 RELATED ID: 5DDR RELATED DB: PDB DBREF 5DDQ A 1 61 PDB 5DDQ 5DDQ 1 61 DBREF 5DDQ B 1 61 PDB 5DDQ 5DDQ 1 61 DBREF 5DDQ C 1 97 UNP P09012 SNRPA_HUMAN 2 98 DBREF 5DDQ D 1 97 UNP P09012 SNRPA_HUMAN 2 98 SEQADV 5DDQ HIS C 30 UNP P09012 TYR 31 ENGINEERED MUTATION SEQADV 5DDQ ARG C 35 UNP P09012 GLN 36 ENGINEERED MUTATION SEQADV 5DDQ HIS D 30 UNP P09012 TYR 31 ENGINEERED MUTATION SEQADV 5DDQ ARG D 35 UNP P09012 GLN 36 ENGINEERED MUTATION SEQRES 1 A 61 C G U U G A C C C A G G A SEQRES 2 A 61 A A C U G G G C G G A A G SEQRES 3 A 61 U A A G G U C C A U U G C SEQRES 4 A 61 A C U C C G G G C C U G A SEQRES 5 A 61 A G C A A C G C G SEQRES 1 B 61 C G U U G A C C C A G G A SEQRES 2 B 61 A A C U G G G C G G A A G SEQRES 3 B 61 U A A G G U C C A U U G C SEQRES 4 B 61 A C U C C G G G C C U G A SEQRES 5 B 61 A G C A A C G C G SEQRES 1 C 97 ALA VAL PRO GLU THR ARG PRO ASN HIS THR ILE TYR ILE SEQRES 2 C 97 ASN ASN LEU ASN GLU LYS ILE LYS LYS ASP GLU LEU LYS SEQRES 3 C 97 LYS SER LEU HIS ALA ILE PHE SER ARG PHE GLY GLN ILE SEQRES 4 C 97 LEU ASP ILE LEU VAL SER ARG SER LEU LYS MET ARG GLY SEQRES 5 C 97 GLN ALA PHE VAL ILE PHE LYS GLU VAL SER SER ALA THR SEQRES 6 C 97 ASN ALA LEU ARG SER MET GLN GLY PHE PRO PHE TYR ASP SEQRES 7 C 97 LYS PRO MET ARG ILE GLN TYR ALA LYS THR ASP SER ASP SEQRES 8 C 97 ILE ILE ALA LYS MET LYS SEQRES 1 D 97 ALA VAL PRO GLU THR ARG PRO ASN HIS THR ILE TYR ILE SEQRES 2 D 97 ASN ASN LEU ASN GLU LYS ILE LYS LYS ASP GLU LEU LYS SEQRES 3 D 97 LYS SER LEU HIS ALA ILE PHE SER ARG PHE GLY GLN ILE SEQRES 4 D 97 LEU ASP ILE LEU VAL SER ARG SER LEU LYS MET ARG GLY SEQRES 5 D 97 GLN ALA PHE VAL ILE PHE LYS GLU VAL SER SER ALA THR SEQRES 6 D 97 ASN ALA LEU ARG SER MET GLN GLY PHE PRO PHE TYR ASP SEQRES 7 D 97 LYS PRO MET ARG ILE GLN TYR ALA LYS THR ASP SER ASP SEQRES 8 D 97 ILE ILE ALA LYS MET LYS HET GLN A 101 10 HET MN A 102 1 HET MN A 103 1 HET MN A 104 1 HET MG A 105 1 HET NA A 106 1 HET NA A 107 1 HET NA A 108 1 HET NA A 109 1 HET NA A 110 1 HET NA A 111 1 HET GLN B 101 10 HET MN B 102 1 HET MN B 103 1 HET MG B 104 1 HET MG B 105 1 HET NA B 106 1 HET NA B 107 1 HET NA B 108 1 HET NA B 109 1 HET NA B 110 1 HET NA D 101 1 HETNAM GLN GLUTAMINE HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 5 GLN 2(C5 H10 N2 O3) FORMUL 6 MN 5(MN 2+) FORMUL 9 MG 3(MG 2+) FORMUL 10 NA 12(NA 1+) FORMUL 27 HOH *216(H2 O) HELIX 1 AA1 LYS C 21 SER C 34 1 14 HELIX 2 AA2 ARG C 35 GLY C 37 5 3 HELIX 3 AA3 GLU C 60 GLN C 72 1 13 HELIX 4 AA4 SER C 90 MET C 96 1 7 HELIX 5 AA5 LYS D 21 SER D 34 1 14 HELIX 6 AA6 ARG D 35 GLY D 37 5 3 HELIX 7 AA7 GLU D 60 GLN D 72 1 13 SHEET 1 AA1 4 ILE C 39 VAL C 44 0 SHEET 2 AA1 4 ALA C 54 PHE C 58 -1 O ILE C 57 N ASP C 41 SHEET 3 AA1 4 THR C 10 ASN C 14 -1 N ILE C 13 O ALA C 54 SHEET 4 AA1 4 ARG C 82 TYR C 85 -1 O GLN C 84 N TYR C 12 SHEET 1 AA2 2 PRO C 75 PHE C 76 0 SHEET 2 AA2 2 LYS C 79 PRO C 80 -1 O LYS C 79 N PHE C 76 SHEET 1 AA3 4 ILE D 39 VAL D 44 0 SHEET 2 AA3 4 ALA D 54 PHE D 58 -1 O ILE D 57 N LEU D 40 SHEET 3 AA3 4 THR D 10 ASN D 14 -1 N ILE D 13 O ALA D 54 SHEET 4 AA3 4 ARG D 82 TYR D 85 -1 O GLN D 84 N TYR D 12 SHEET 1 AA4 2 PRO D 75 PHE D 76 0 SHEET 2 AA4 2 LYS D 79 PRO D 80 -1 O LYS D 79 N PHE D 76 LINK N7 G A 12 MN MN A 103 1555 1555 2.35 LINK OP1 C A 34 MG MG A 105 1555 1555 2.32 LINK O6 G A 46 NA NA A 109 1555 1555 2.53 LINK O GLN A 101 MN MN A 102 1555 1555 2.36 LINK OXT GLN A 101 MN MN A 102 1555 1555 2.18 LINK MN MN A 102 O HOH A 215 1555 1555 2.24 LINK MN MN A 102 O HOH A 222 1555 1555 2.20 LINK MN MN A 102 O HOH A 227 1555 1555 2.23 LINK MN MN A 102 O HOH A 239 1555 1555 2.25 LINK MN MN A 102 O HOH A 247 1555 1555 2.25 LINK MN MN A 103 O HOH A 240 1555 1555 2.26 LINK MN MN A 103 O HOH A 250 1555 1555 2.26 LINK MN MN A 103 O HOH A 258 1555 1555 2.27 LINK MN MN A 103 O HOH A 280 1555 1555 2.27 LINK MN MN A 103 O HOH A 286 1555 1555 2.23 LINK MN MN A 104 NE2 HIS D 9 2546 1555 2.49 LINK NA NA A 106 O HOH A 225 1555 1555 2.40 LINK NA NA A 106 O HOH A 231 1555 1555 2.56 LINK NA NA A 107 O HOH A 208 1555 1555 2.69 LINK NA NA A 107 O HOH A 280 1555 1555 2.28 LINK NA NA A 108 O HOH A 241 1555 1555 2.52 LINK NA NA A 108 O HOH A 259 1555 1555 2.49 LINK NA NA A 108 O HOH A 275 1555 1555 2.56 LINK NA NA A 109 O HOH A 204 1555 1555 2.02 LINK NA NA A 109 O HOH A 235 1555 1555 2.54 LINK NA NA A 109 O HOH A 257 1555 1555 2.59 LINK NA NA A 109 O HOH A 284 1555 1555 2.56 LINK NA NA A 110 O HOH A 201 1555 1555 2.41 LINK NA NA A 110 O HOH D 228 1555 1555 2.44 LINK NA NA A 111 O HOH A 274 1555 1555 2.37 LINK NA NA A 111 O HOH A 282 1555 1555 2.46 LINK O HOH A 246 NA NA B 110 1556 1555 2.35 LINK O HOH A 265 NA NA D 101 1555 1555 2.45 LINK O HOH A 283 NA NA D 101 1555 1555 2.36 LINK OP2 G B 26 MN MN B 102 1555 1555 2.75 LINK O4 U B 32 NA NA B 107 1555 1555 2.80 LINK OP1 U B 42 NA NA B 110 1555 1555 2.55 LINK O6 G B 46 NA NA B 107 1555 1555 2.67 LINK O6 G B 47 NA NA B 107 1555 1555 2.55 LINK O GLN B 101 MN MN B 103 1555 1555 2.19 LINK MN MN B 103 O HOH B 227 1555 1555 2.20 LINK MN MN B 103 O HOH B 228 1555 1555 2.24 LINK MN MN B 103 O HOH B 230 1555 1555 2.23 LINK MN MN B 103 O HOH B 238 1555 1555 2.22 LINK MN MN B 103 O HOH B 255 1555 1555 2.24 LINK MG MG B 104 O HOH B 224 1555 1555 2.09 LINK MG MG B 104 O HOH B 251 1555 1555 2.11 LINK MG MG B 105 O HOH B 221 1555 1555 2.13 LINK MG MG B 105 O HOH B 234 1555 1555 2.12 LINK MG MG B 105 O HOH B 249 1555 1555 2.05 LINK MG MG B 105 O HOH B 257 1555 1555 2.07 LINK MG MG B 105 O HOH B 263 1555 1555 2.11 LINK NA NA B 106 O HOH B 216 1555 1555 2.40 LINK NA NA B 106 O HOH B 245 1555 1555 2.63 LINK NA NA B 106 O HOH B 249 1555 1555 2.53 LINK NA NA B 106 O HOH B 257 1555 1555 2.47 LINK NA NA B 106 O HOH B 261 1555 1555 2.38 LINK NA NA B 107 O HOH B 201 1555 1555 2.30 LINK NA NA B 107 O HOH B 248 1555 1555 2.45 LINK NA NA B 108 O HOH B 241 1555 1555 2.49 LINK NA NA B 108 O HOH B 243 1555 1555 2.50 LINK NA NA B 109 O HOH B 205 1555 1555 2.62 LINK NA NA B 109 O HOH B 259 1555 1555 2.48 LINK NA NA B 110 OD2 ASP C 91 1555 1555 2.59 LINK NA NA B 110 O HOH C 216 1555 1555 2.38 LINK O HOH B 203 NA NA D 101 1555 1555 2.23 LINK O HOH B 225 NA NA D 101 1555 1555 2.46 LINK OD2 ASP D 91 NA NA D 101 1555 1555 2.63 LINK NA NA D 101 O HOH D 201 1555 1555 2.17 SITE 1 AC1 13 C A 1 G A 22 G A 23 A A 24 SITE 2 AC1 13 G A 54 C A 58 G A 59 MN A 102 SITE 3 AC1 13 HOH A 215 HOH A 222 HOH A 223 HOH A 239 SITE 4 AC1 13 HOH A 247 SITE 1 AC2 7 G A 54 GLN A 101 HOH A 215 HOH A 222 SITE 2 AC2 7 HOH A 227 HOH A 239 HOH A 247 SITE 1 AC3 7 G A 12 NA A 107 HOH A 240 HOH A 250 SITE 2 AC3 7 HOH A 258 HOH A 280 HOH A 286 SITE 1 AC4 1 C A 34 SITE 1 AC5 5 G A 12 A A 13 HOH A 225 HOH A 231 SITE 2 AC5 5 C B 33 SITE 1 AC6 5 G A 11 G A 12 MN A 103 HOH A 208 SITE 2 AC6 5 HOH A 280 SITE 1 AC7 5 G A 20 C A 21 HOH A 241 HOH A 259 SITE 2 AC7 5 HOH A 275 SITE 1 AC8 5 G A 46 HOH A 204 HOH A 235 HOH A 257 SITE 2 AC8 5 HOH A 284 SITE 1 AC9 4 G A 31 U A 32 HOH A 201 HOH D 228 SITE 1 AD1 4 A A 29 G A 30 HOH A 274 HOH A 282 SITE 1 AD2 9 C B 1 G B 22 G B 23 A B 24 SITE 2 AD2 9 G B 54 C B 58 G B 59 C B 60 SITE 3 AD2 9 MN B 103 SITE 1 AD3 1 G B 26 SITE 1 AD4 6 GLN B 101 HOH B 227 HOH B 228 HOH B 230 SITE 2 AD4 6 HOH B 238 HOH B 255 SITE 1 AD5 2 HOH B 224 HOH B 251 SITE 1 AD6 7 G B 12 NA B 106 HOH B 221 HOH B 234 SITE 2 AD6 7 HOH B 249 HOH B 257 HOH B 263 SITE 1 AD7 8 G B 11 G B 12 MG B 105 HOH B 216 SITE 2 AD7 8 HOH B 245 HOH B 249 HOH B 257 HOH B 261 SITE 1 AD8 7 G B 31 U B 32 C B 33 G B 46 SITE 2 AD8 7 G B 47 HOH B 201 HOH B 248 SITE 1 AD9 5 G B 30 G B 31 U B 32 HOH B 241 SITE 2 AD9 5 HOH B 243 SITE 1 AE1 4 A B 29 G B 30 HOH B 205 HOH B 259 SITE 1 AE2 4 HOH A 246 U B 42 ASP C 91 HOH C 216 SITE 1 AE3 8 U A 42 HOH A 265 HOH A 283 A B 52 SITE 2 AE3 8 HOH B 203 HOH B 225 ASP D 91 HOH D 201 CRYST1 60.605 85.701 60.889 90.00 99.72 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016500 0.000000 0.002828 0.00000 SCALE2 0.000000 0.011668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016663 0.00000